Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0245200 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 3.1e-104 382.1 238 100.0
Zm00001eb010490 Zea mays HOM05D003311 ORTHO05D003707 2.5e-53 213.0 194 62.4
Os10g0148100 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 1.7e-49 200.3 166 66.3
Zm00001eb026460 Zea mays HOM05D003311 ORTHO05D003707 2.3e-46 189.9 184 60.3
Zm00001eb398790 Zea mays HOM05D003311 ORTHO05D003707 6.6e-46 188.3 160 68.8
Zm00001eb026500 Zea mays HOM05D003311 ORTHO05D003707 1.3e-41 174.1 230 60.9
Os10g0150700 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 4.0e-35 152.5 175 54.9
Zm00001eb026530 Zea mays HOM05D003311 ORTHO05D003707 5.2e-35 152.1 173 52.6
Os10g0150600 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 2.9e-33 146.4 175 52.6
Os10g0150800 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 2.9e-33 146.4 175 52.0
Os10g0149200 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 4.9e-33 145.6 170 54.7
Os10g0149400 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 4.9e-33 145.6 149 60.4
Os10g0150400 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 4.9e-33 145.6 175 53.1
Os10g0149800 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 8.4e-33 144.8 170 57.1
Os10g0149000 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 2.4e-32 143.3 153 58.2
Os10g0150300 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 2.7e-31 139.8 150 54.0
Os10g0148700 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 4.6e-31 139.0 156 53.8
Os03g0245300 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 3.6e-20 102.8 131 43.5
VMungo1309G0179 Vigna mungo HOM05D003311 ORTHO05D003707 3.6e-20 102.8 148 42.6
Glyma.04G005400 Glycine max HOM05D003311 ORTHO05D003707 1.8e-19 100.5 148 41.9
GSVIVG01024081001 Vitis vinifera HOM05D003311 ORTHO05D003707 2.4e-19 100.1 186 37.1
TAR628G0207 Trochodendron aralioides HOM05D003311 ORTHO05D003707 5.3e-19 99.0 165 40.6
Actinidia20487 Actinidia chinensis HOM05D000144 ORTHO05D003707 9.0e-19 98.2 171 38.6
Dinv04967 Davidia involucrata HOM05D003311 ORTHO05D003707 9.0e-19 98.2 125 44.8
Lalb_Chr03g0024711 Lupinus albus HOM05D003311 ORTHO05D003707 9.0e-19 98.2 201 35.8
MBI09_g00986_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 1.5e-18 97.4 127 44.1
Phvul.009G024900 Phaseolus vulgaris HOM05D003311 ORTHO05D003707 1.5e-18 97.4 148 40.5
Cfa005186 Carpinus fangiana HOM05D003311 ORTHO05D003707 2.6e-18 96.7 162 36.4
Phvul.011G026700 Phaseolus vulgaris HOM05D003311 ORTHO05D003707 3.4e-18 96.3 171 37.4
Potri.009G129900 Populus trichocarpa HOM05D003311 ORTHO05D003707 3.4e-18 96.3 191 37.7
Eucgr.L01869 Eucalyptus grandis HOM05D003311 ORTHO05D003707 4.5e-18 95.9 179 37.4
ATR0810G037 Amborella trichopoda HOM05D003311 ORTHO05D003707 5.8e-18 95.5 147 38.8
DCAR_022953 Daucus carota HOM05D003311 ORTHO05D003707 7.6e-18 95.1 149 41.6
TAR376G0773 Trochodendron aralioides HOM05D003311 ORTHO05D003707 7.6e-18 95.1 154 39.6
TPR.G17164 Trifolium pratense HOM05D003311 ORTHO05D003707 9.9e-18 94.7 173 37.0
Actinidia00597 Actinidia chinensis HOM05D003311 ORTHO05D003707 1.3e-17 94.4 153 38.6
CiPaw.06G125100 Carya illinoinensis HOM05D003311 ORTHO05D003707 2.9e-17 93.2 191 33.5
Lalb_Chr01g0001331 Lupinus albus HOM05D003311 ORTHO05D003707 4.9e-17 92.4 137 38.7
Nn5g29097 Nelumbo nucifera HOM05D003311 ORTHO05D003707 4.9e-17 92.4 151 35.8
Peaxi162Scf00538g00520 Petunia axillaris HOM05D003311 ORTHO05D003707 6.4e-17 92.0 151 39.1
Rhsim11G0187900 Rhododendron simsii HOM05D003311 ORTHO05D003707 6.4e-17 92.0 187 37.4
Sed0022693 Sechium edule HOM05D003311 ORTHO05D003707 6.4e-17 92.0 151 39.1
DCAR_003701 Daucus carota HOM05D003311 ORTHO05D003707 8.4e-17 91.7 125 42.4
Lj9A389T67 Lonicera japonica HOM05D003311 ORTHO05D003707 8.4e-17 91.7 152 40.8
Thecc.02G066700 Theobroma cacao HOM05D003311 ORTHO05D003707 8.4e-17 91.7 189 38.1
TWI79G0740 Tripterygium wilfordii HOM05D003311 ORTHO05D003707 8.4e-17 91.7 157 36.9
CsaV3_7G000820 Cucumis sativus L. HOM05D000144 ORTHO05D003707 1.1e-16 91.3 159 34.6
Oeu010053.1 Olea europaea HOM05D003311 ORTHO05D003707 1.1e-16 91.3 171 38.0
Potri.004G168600 Populus trichocarpa HOM05D003311 ORTHO05D003707 1.1e-16 91.3 190 39.5
MBI05_g46239_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 1.4e-16 90.9 141 39.7
MD05G1116400 Malus domestica HOM05D003311 ORTHO05D003707 1.4e-16 90.9 140 35.0
Medtr4g075333 Medicago truncatula HOM05D003311 ORTHO05D003707 1.4e-16 90.9 160 36.2
Sabra04G0113000 Salix brachista HOM05D003311 ORTHO05D003707 1.4e-16 90.9 161 37.9
Ca_19004_v3 Cicer arietinum L. HOM05D003311 ORTHO05D003707 1.9e-16 90.5 162 38.9
Duzib132G0547 Durio zibethinus HOM05D003311 ORTHO05D003707 2.4e-16 90.1 152 39.5
Eucgr.I01377 Eucalyptus grandis HOM05D003311 ORTHO05D003707 2.4e-16 90.1 148 37.2
Sabra09G0099300 Salix brachista HOM05D003311 ORTHO05D003707 2.4e-16 90.1 175 37.7
Atru.chr5.3229 Acer truncatum HOM05D003311 ORTHO05D003707 3.2e-16 89.7 185 35.1
QL11p047628 Quercus lobata HOM05D003311 ORTHO05D003707 4.2e-16 89.4 133 41.4
COL.COLO4_17258 Corchorus olitorius HOM05D003311 ORTHO05D003707 5.4e-16 89.0 182 37.4
MD10G1118600 Malus domestica HOM05D003311 ORTHO05D003707 5.4e-16 89.0 139 33.8
Hund00043 Selenicereus undatus HOM05D003311 ORTHO05D003707 5.4e-16 89.0 133 42.9
arahy.Tifrunner.gnm1.ann1.M74JA5 Arachis hypogaea HOM05D003311 ORTHO05D003707 9.3e-16 88.2 152 36.8
CAN.G588.28 Capsicum annuum HOM05D003311 ORTHO05D003707 9.3e-16 88.2 151 39.7
Duzib099G0001 Durio zibethinus HOM05D003311 ORTHO05D003707 9.3e-16 88.2 158 39.2
Oeu008607.1 Olea europaea HOM05D003311 ORTHO05D003707 9.3e-16 88.2 159 37.1
PGR042G2254 Punica granatum HOM05D003311 ORTHO05D003707 9.3e-16 88.2 162 38.3
CiPaw.05G077500 Carya illinoinensis HOM05D003311 ORTHO05D003707 1.2e-15 87.8 153 35.9
Os10g0149100 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 1.2e-15 87.8 97 59.8
PGSC0003DMG400001243 Solanum tuberosum HOM05D003311 ORTHO05D003707 1.2e-15 87.8 132 40.9
Cpa.g.sc37.189 Carica papaya HOM05D003311 ORTHO05D003707 1.6e-15 87.4 169 34.9
Hma1.2p1_4000F.1_g338120 Hydrangea macrophylla HOM05D003311 ORTHO05D003707 1.6e-15 87.4 143 36.4
Nitab4.5_0000956g0190 Nicotiana tabacum HOM05D003311 ORTHO05D003707 2.7e-15 86.7 165 37.0
CANSAT25G1598 Cannabis sativa HOM05D003311 ORTHO05D003707 3.5e-15 86.3 155 33.5
ClCG02G011360 Citrullus lanatus HOM05D003311 ORTHO05D003707 3.5e-15 86.3 180 34.4
ClCG02G011540 Citrullus lanatus HOM05D003311 ORTHO05D003707 3.5e-15 86.3 180 34.4
TWI75G0647 Tripterygium wilfordii HOM05D003311 ORTHO05D003707 3.5e-15 86.3 163 36.2
arahy.Tifrunner.gnm1.ann1.6SU9IG Arachis hypogaea HOM05D003311 ORTHO05D003707 4.6e-15 85.9 152 36.2
MSTRG.16857 Avicennia marina HOM05D003311 ORTHO05D003707 4.6e-15 85.9 162 35.2
CSS0033713 Camellia sinensis var. sinensis HOM05D003311 ORTHO05D003707 6.0e-15 85.5 139 39.6
Nn1g05901 Nelumbo nucifera HOM05D003311 ORTHO05D003707 7.9e-15 85.1 155 34.8
Sc08g0003160 Simmondsia chinensis HOM05D003311 ORTHO05D003707 7.9e-15 85.1 159 37.1
Sopen01g053220 Solanum pennellii HOM05D003311 ORTHO05D003707 7.9e-15 85.1 151 37.7
AUR62010091 Chenopodium quinoa HOM05D003311 ORTHO05D003707 1.0e-14 84.7 130 38.5
Duzib052G0176 Durio zibethinus HOM05D003311 ORTHO05D003707 1.0e-14 84.7 169 37.3
Lj3g0005308 Lotus japonicus HOM05D003311 ORTHO05D003707 1.0e-14 84.7 158 36.7
Oeu008608.1 Olea europaea HOM05D003311 ORTHO05D003707 1.0e-14 84.7 151 36.4
Sopen10g024840 Solanum pennellii HOM05D003311 ORTHO05D003707 1.0e-14 84.7 161 37.9
Peaxi162Scf00362g00962 Petunia axillaris HOM05D003311 ORTHO05D003707 1.8e-14 84.0 130 38.5
PGSC0003DMG400001631 Solanum tuberosum HOM05D003311 ORTHO05D003707 1.8e-14 84.0 133 39.1
Aqoxy5G01799 Aquilegia oxysepala HOM05D003311 ORTHO05D003707 2.3e-14 83.6 157 31.8
Prupe.8G160900 Prunus persica HOM05D003311 ORTHO05D003707 2.3e-14 83.6 149 36.2
MSTRG.5426 Avicennia marina HOM05D003311 ORTHO05D003707 3.0e-14 83.2 100 43.0
AUR62013087 Chenopodium quinoa HOM05D003311 ORTHO05D003707 3.0e-14 83.2 130 37.7
Nitab4.5_0013889g0010 Nicotiana tabacum HOM05D003311 ORTHO05D003707 5.1e-14 82.4 165 36.4
GSVIVG01024076001 Vitis vinifera HOM05D003311 ORTHO05D003707 5.1e-14 82.4 157 36.9
Hund06406 Selenicereus undatus HOM05D003396 ORTHO05D003646 6.7e-14 82.0 153 38.6
Sopen10g024820 Solanum pennellii HOM05D003311 ORTHO05D003707 6.7e-14 82.0 167 35.9
Sopen10g024830 Solanum pennellii HOM05D003311 ORTHO05D003707 6.7e-14 82.0 167 36.5
CsaV3_2G015730 Cucumis sativus L. HOM05D003311 ORTHO05D003707 8.7e-14 81.6 133 37.6
FAN20G1603 Fragaria x ananassa HOM05D003311 ORTHO05D003707 8.7e-14 81.6 132 35.6
FAN27G1129 Fragaria x ananassa HOM05D003311 ORTHO05D003707 8.7e-14 81.6 132 35.6
Solyc10g054900.2 Solanum lycopersicum HOM05D003311 ORTHO05D003707 8.7e-14 81.6 167 35.9
vmacro02251 Vaccinium macrocarpon HOM05D003311 ORTHO05D003707 8.7e-14 81.6 154 34.4
MELO3C013376.2 Cucumis melo HOM05D003311 ORTHO05D003707 1.1e-13 81.3 160 33.8
Aqoxy5G01798 Aquilegia oxysepala HOM05D003311 ORTHO05D003707 1.9e-13 80.5 186 31.2
CSS0038966 Camellia sinensis var. sinensis HOM05D003311 ORTHO05D003707 1.9e-13 80.5 133 39.1
ECA246G0279 Erigeron canadensis HOM05D003311 ORTHO05D003707 1.9e-13 80.5 156 32.7
Gorai.002G193500 Gossypium raimondii HOM05D003311 ORTHO05D003707 1.9e-13 80.5 166 36.7
unitig_37.g12824 Utricularia gibba HOM05D003311 ORTHO05D003707 1.9e-13 80.5 152 36.8
unitig_744.g24265 Utricularia gibba HOM05D003311 ORTHO05D003707 1.9e-13 80.5 156 35.9
FAN24G0785 Fragaria x ananassa HOM05D003311 ORTHO05D003707 2.5e-13 80.1 151 33.8
Gohir.D01G156000 Gossypium hirsutum HOM05D003311 ORTHO05D003707 2.5e-13 80.1 166 36.7
FvH4_2g01970 Fragaria vesca HOM05D003311 ORTHO05D003707 3.3e-13 79.7 151 33.8
MELO3C020785.2 Cucumis melo HOM05D003311 ORTHO05D003707 4.3e-13 79.3 179 33.5
FAN15G0502 Fragaria x ananassa HOM05D003311 ORTHO05D003707 4.3e-13 79.3 151 33.8
MBI05_g26897_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 4.3e-13 79.3 123 37.4
HanXRQChr10g0294871 Helianthus annuus HOM05D003311 ORTHO05D003707 7.4e-13 78.6 157 33.1
Os07g0484900 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 7.4e-13 78.6 88 53.4
PGSC0003DMG400004441 Solanum tuberosum HOM05D003311 ORTHO05D003707 9.6e-13 78.2 156 37.8
unitig_0.g832 Utricularia gibba HOM05D003311 ORTHO05D003707 9.6e-13 78.2 93 41.9
Gohir.A01G164100 Gossypium hirsutum HOM05D003311 ORTHO05D003707 1.3e-12 77.8 166 36.1
ClCG00G004470 Citrullus lanatus HOM05D003311 ORTHO05D003707 1.6e-12 77.4 137 37.2
Ciclev10029326m.g Citrus clementina HOM05D003311 ORTHO05D003707 1.6e-12 77.4 131 38.9
HanXRQChr10g0289061 Helianthus annuus HOM05D003311 ORTHO05D003707 1.6e-12 77.4 174 32.8
Sed0012527 Sechium edule HOM05D003311 ORTHO05D003707 1.6e-12 77.4 175 31.4
Aa31LG6G16430 Aethionema arabicum HOM05D003311 ORTHO05D003707 2.8e-12 76.6 147 32.0
Atru.chr5.3230 Acer truncatum HOM05D003311 ORTHO05D003707 4.8e-12 75.9 179 33.5
PSO170G2430 Papaver somniferum HOM05D003311 ORTHO05D003707 6.2e-12 75.5 188 31.9
Psat7g138320 Pisum sativum HOM05D003311 ORTHO05D003707 6.2e-12 75.5 122 35.2
unitig_21.g20802 Utricularia gibba HOM05D003311 ORTHO05D003707 8.1e-12 75.1 144 32.6
QL09p030113 Quercus lobata HOM05D003311 ORTHO05D003707 1.8e-11 73.9 91 41.8
Carub.0007s0062 Capsella rubella HOM05D003311 ORTHO05D003707 2.4e-11 73.6 139 30.9
A08p24020 Brassica napus HOM05D003311 ORTHO05D003707 3.1e-11 73.2 145 33.1
AL4G10230 Arabidopsis lyrata HOM05D003311 ORTHO05D003707 9.0e-11 71.6 133 36.1
A04p15910 Brassica napus HOM05D003311 ORTHO05D003707 9.0e-11 71.6 140 34.3
PSO700G0002 Papaver somniferum HOM05D003311 ORTHO05D003707 9.0e-11 71.6 186 30.6
CARHR294460 Cardamine hirsuta HOM05D003311 ORTHO05D003707 1.5e-10 70.9 185 30.3
Rhsim05G0063000 Rhododendron simsii HOM05D003311 ORTHO05D003707 1.5e-10 70.9 133 35.3
SalBow3G2231 Salvia bowleyana HOM05D003311 ORTHO05D003707 1.5e-10 70.9 160 31.2
BcaB03g12224 Brassica carinata HOM05D003311 ORTHO05D003707 2.0e-10 70.5 187 31.0
CDE08G0629 Ceratophyllum demersum HOM05D003311 ORTHO05D003707 2.0e-10 70.5 126 33.3
Manes.11G090200 Manihot esculenta HOM05D003311 ORTHO05D003707 2.6e-10 70.1 145 33.1
BraA08t34359Z Brassica rapa HOM05D003311 ORTHO05D003707 3.4e-10 69.7 186 31.2
Os10g0150000 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 4.5e-10 69.3 70 62.9
QL05p072824 Quercus lobata HOM05D003311 ORTHO05D008853 4.5e-10 69.3 147 34.0
Sp4g00290 Schrenkiella parvula HOM05D003311 ORTHO05D003707 4.5e-10 69.3 183 33.3
ClCG02G004300 Citrullus lanatus HOM05D003311 ORTHO05D003707 5.8e-10 68.9 128 40.6
Thhalv10025123m.g Eutrema salsugineum HOM05D003311 ORTHO05D003707 7.6e-10 68.6 183 30.1
BcaC01g00253 Brassica carinata HOM05D003311 ORTHO05D003707 1.0e-09 68.2 186 30.6
BcaNung01299 Brassica carinata HOM05D003311 ORTHO05D003707 1.0e-09 68.2 68 41.2
C03p77310 Brassica napus HOM05D003311 ORTHO05D003707 1.0e-09 68.2 186 30.6
BolC1t00017H Brassica oleracea HOM05D003311 ORTHO05D003707 1.0e-09 68.2 68 41.2
BolC3t19984H Brassica oleracea HOM05D003311 ORTHO05D003707 1.0e-09 68.2 186 30.6
SalBow6G3538 Salvia bowleyana HOM05D003311 ORTHO05D003707 1.0e-09 68.2 133 34.6
EL10Ac9g21436 Beta vulgaris HOM05D003311 ORTHO05D003707 1.3e-09 67.8 142 33.8
C01p00120 Brassica napus HOM05D003311 ORTHO05D003707 1.3e-09 67.8 120 34.2
CARHR111970 Cardamine hirsuta HOM05D003311 ORTHO05D003707 1.3e-09 67.8 183 33.9
THA.LOC104807787 Tarenaya hassleriana HOM05D003311 ORTHO05D003707 2.2e-09 67.0 72 41.7
Aa31LG7G15540 Aethionema arabicum HOM05D003311 ORTHO05D003707 2.9e-09 66.6 167 31.1
AL7G10640 Arabidopsis lyrata HOM05D003311 ORTHO05D003707 2.9e-09 66.6 181 29.3
CAN.G104.8 Capsicum annuum HOM05D003311 ORTHO05D003707 2.9e-09 66.6 130 33.1
Sp7g37040 Schrenkiella parvula HOM05D003311 ORTHO05D003707 2.9e-09 66.6 171 28.1
Duzib248G1175 Durio zibethinus HOM05D003311 ORTHO05D003707 3.8e-09 66.2 72 48.6
Nitab4.5_0000283g0120 Nicotiana tabacum HOM05D003311 ORTHO05D003707 3.8e-09 66.2 163 34.4
THA.LOC104824774 Tarenaya hassleriana HOM05D003311 ORTHO05D003707 3.8e-09 66.2 89 38.2
BraA01t00013Z Brassica rapa HOM05D003311 ORTHO05D003707 4.9e-09 65.9 120 33.3
Nitab4.5_0000980g0220 Nicotiana tabacum HOM05D003311 ORTHO05D003707 4.9e-09 65.9 96 42.7
Oeu010052.1 Olea europaea HOM05D003311 ORTHO05D003707 4.9e-09 65.9 122 31.1
AT2G21140 Arabidopsis thaliana HOM05D003311 ORTHO05D003707 8.4e-09 65.1 187 32.1
C04p50360 Brassica napus HOM05D003311 ORTHO05D003707 8.4e-09 65.1 150 32.7
BolC4t26634H Brassica oleracea HOM05D003311 ORTHO05D003707 8.4e-09 65.1 150 32.7
Oeu046127.1 Olea europaea HOM05D003311 ORTHO05D003707 1.4e-08 64.3 94 38.3
QL04p095545 Quercus lobata HOM05D003311 ORTHO05D003707 1.4e-08 64.3 78 42.3
AT4G38770 Arabidopsis thaliana HOM05D003311 ORTHO05D003707 2.5e-08 63.5 180 28.9
Thhalv10000244m.g Eutrema salsugineum HOM05D003311 ORTHO05D003707 7.1e-08 62.0 184 32.6
MBI05_g25817_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 2.7e-07 60.1 108 40.7
Carub.0004s0016 Capsella rubella HOM05D003311 ORTHO05D003707 4.6e-07 59.3 197 28.9
HPP92_022646 Vanilla planifolia HOM05D003311 ORTHO05D003707 4.6e-07 59.3 104 33.7


User provided reference genes

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