Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 5.4e-184 647.5 325 100.0
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 2.5e-120 436.0 303 68.3
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 7.5e-117 424.5 292 68.8
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 9.8e-117 424.1 310 67.4
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.3e-116 423.7 316 65.5
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.8e-115 419.9 283 69.6
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 5.4e-115 418.3 285 69.5
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 1.2e-114 417.2 277 71.5
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 1.2e-114 417.2 311 65.0
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 5.9e-114 414.8 299 65.9
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 7.7e-114 414.5 299 66.2
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 1.0e-113 414.1 276 70.7
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.3e-113 413.7 275 72.0
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 1.7e-113 413.3 300 66.0
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 2.9e-113 412.5 299 65.6
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 2.9e-113 412.5 275 69.5
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 3.8e-113 412.1 275 72.4
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 3.8e-113 412.1 272 71.7
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 5.0e-113 411.8 288 67.4
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 5.0e-113 411.8 279 69.2
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 6.5e-113 411.4 307 64.8
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 1.9e-112 409.8 325 61.5
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 3.2e-112 409.1 277 69.7
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 3.2e-112 409.1 277 69.3
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 4.2e-112 408.7 290 65.9
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 5.5e-112 408.3 275 70.5
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 5.5e-112 408.3 277 67.9
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 5.5e-112 408.3 279 69.9
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 5.5e-112 408.3 325 61.5
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 7.2e-112 407.9 277 69.0
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 7.2e-112 407.9 275 69.1
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 7.2e-112 407.9 275 69.8
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 7.2e-112 407.9 300 64.3
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.2e-111 407.1 313 62.9
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.2e-111 407.1 296 68.2
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 1.6e-111 406.8 297 65.3
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 2.7e-111 406.0 318 61.6
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 3.6e-111 405.6 275 68.7
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 3.6e-111 405.6 285 66.7
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 3.6e-111 405.6 297 64.3
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 3.6e-111 405.6 297 66.0
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 3.6e-111 405.6 272 70.6
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 4.7e-111 405.2 288 66.7
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 6.1e-111 404.8 277 69.0
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 1.0e-110 404.1 285 66.7
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 1.0e-110 404.1 285 67.0
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.0e-110 404.1 301 65.4
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 1.4e-110 403.7 279 68.1
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 1.8e-110 403.3 300 65.3
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.8e-110 403.3 297 65.0
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 2.3e-110 402.9 277 69.0
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 3.0e-110 402.5 276 67.8
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 3.0e-110 402.5 288 66.7
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 3.0e-110 402.5 296 65.2
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 4.0e-110 402.1 274 70.4
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 4.0e-110 402.1 297 64.0
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 4.0e-110 402.1 274 67.5
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 4.0e-110 402.1 295 64.1
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.2e-110 401.7 301 64.8
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 5.2e-110 401.7 285 67.7
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 5.2e-110 401.7 290 65.5
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 5.2e-110 401.7 315 60.6
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 6.8e-110 401.4 301 65.1
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 8.8e-110 401.0 296 66.6
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 8.8e-110 401.0 300 65.0
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.2e-109 400.6 277 67.9
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 1.5e-109 400.2 312 63.5
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.5e-109 400.2 277 68.6
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.5e-109 400.2 300 64.7
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 2.6e-109 399.4 295 63.4
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 4.4e-109 398.7 277 66.4
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 4.4e-109 398.7 281 68.3
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 5.7e-109 398.3 285 66.0
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 5.7e-109 398.3 285 66.0
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 5.7e-109 398.3 293 66.9
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 7.5e-109 397.9 274 69.7
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 7.5e-109 397.9 275 69.8
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 1.7e-108 396.7 274 69.3
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 1.7e-108 396.7 309 62.1
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.2e-108 396.4 274 69.0
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 2.2e-108 396.4 279 66.3
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 2.8e-108 396.0 275 69.8
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 2.8e-108 396.0 275 68.7
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.8e-108 396.0 297 64.0
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 6.3e-108 394.8 274 68.6
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 8.3e-108 394.4 299 64.9
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 8.3e-108 394.4 272 69.1
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 1.4e-107 393.7 274 67.9
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 1.4e-107 393.7 277 66.8
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.8e-107 393.3 272 68.4
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 2.4e-107 392.9 295 64.7
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 2.4e-107 392.9 294 65.3
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 3.1e-107 392.5 274 68.6
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 3.1e-107 392.5 297 63.6
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 4.1e-107 392.1 274 67.9
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 7.0e-107 391.3 274 68.2
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 7.0e-107 391.3 274 68.2
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 7.0e-107 391.3 293 65.2
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 7.0e-107 391.3 274 68.2
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 7.0e-107 391.3 274 68.2
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.6e-106 390.2 274 68.2
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 1.6e-106 390.2 274 68.2
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 1.6e-106 390.2 274 68.2
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 1.6e-106 390.2 297 64.6
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 1.6e-106 390.2 279 65.2
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 2.0e-106 389.8 293 65.2
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 2.0e-106 389.8 296 64.2
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 2.7e-106 389.4 274 67.9
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 2.7e-106 389.4 277 66.1
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 3.5e-106 389.0 293 64.8
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 3.5e-106 389.0 274 67.5
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 3.5e-106 389.0 265 70.2
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 4.5e-106 388.7 274 67.9
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 5.9e-106 388.3 306 62.1
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 1.0e-105 387.5 274 67.2
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.3e-105 386.3 270 67.8
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.9e-105 386.0 275 68.0
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 8.6e-105 384.4 288 64.9
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 9.5e-104 380.9 269 67.3
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 2.1e-103 379.8 346 56.9
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.1e-103 379.8 308 60.4
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 6.1e-103 378.3 272 65.8
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 3.0e-102 375.9 271 64.6
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.2e-101 374.0 285 61.8
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 7.5e-101 371.3 264 67.0
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 1.1e-99 367.5 274 66.4
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 1.0e-97 360.9 281 61.9
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 3.0e-97 359.4 320 56.9
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 3.9e-97 359.0 293 61.8
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 1.5e-96 357.1 282 61.3
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 7.3e-96 354.8 306 59.2
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 2.1e-95 353.2 311 57.9
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 3.7e-92 342.4 305 57.0
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 1.1e-91 340.9 287 60.3
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.0e-90 336.7 271 60.9
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 2.7e-90 336.3 272 59.2
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 1.7e-89 333.6 281 56.6
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 7.3e-88 328.2 274 58.0
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 1.7e-84 317.0 239 65.3
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 1.1e-83 314.3 277 53.4
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 7.3e-80 301.6 186 78.0
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 7.3e-80 301.6 208 72.6
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 1.3e-76 290.8 282 52.8
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 3.9e-73 279.3 286 48.6
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 6.6e-73 278.5 291 54.0
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 3.4e-69 266.2 274 46.0
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 9.9e-69 264.6 237 57.4
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.9e-67 260.4 183 66.1
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 4.6e-66 255.8 191 64.9
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 7.6e-61 238.4 239 55.2
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 9.3e-59 231.5 218 58.3
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 2.7e-58 229.9 174 69.0
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 6.9e-54 215.3 220 53.6
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 9.9e-53 211.5 159 66.0
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.1e-48 198.0 123 74.0
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.8e-46 190.7 186 54.3
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 3.8e-44 183.0 175 54.9
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 3.2e-43 179.9 254 44.1
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.0e-33 146.7 138 56.5
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 1.6e-31 141.0 86 76.7
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 4.5e-29 132.9 280 30.4
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 4.5e-29 132.9 77 79.2
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.0e-25 121.7 75 77.3
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 9.7e-24 115.2 158 44.3
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 4.1e-22 109.8 66 80.3
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.4e-17 94.7 68 70.6
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.8e-17 94.4 108 46.3
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 8.8e-17 92.0 89 46.1
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 8.2e-15 85.5 83 53.0
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 6.1e-10 69.3 181 28.7
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 7.5e-08 62.4 84 38.1


User provided reference genes

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