Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 1.3e-103 379.8 193 100.0
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 5.5e-35 151.8 208 43.8
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 8.0e-34 147.9 212 41.0
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 5.2e-33 145.2 211 40.3
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.2e-32 144.1 199 44.2
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 1.2e-32 144.1 174 44.8
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 2.0e-32 143.3 211 40.3
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 2.6e-32 142.9 197 42.6
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 2.6e-32 142.9 211 39.8
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 2.6e-32 142.9 180 43.9
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 5.7e-32 141.7 211 40.3
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 5.7e-32 141.7 201 40.8
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 7.5e-32 141.4 211 40.3
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 9.8e-32 141.0 197 41.1
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.3e-31 140.6 211 40.3
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 1.7e-31 140.2 208 39.9
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 2.8e-31 139.4 207 40.6
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 2.8e-31 139.4 196 42.3
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 4.9e-31 138.7 188 42.0
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 4.9e-31 138.7 198 40.9
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 6.3e-31 138.3 197 41.6
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 1.4e-30 137.1 219 39.3
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.4e-30 137.1 205 39.5
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 1.8e-30 136.7 205 39.5
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 2.4e-30 136.3 207 38.6
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 3.2e-30 136.0 188 43.1
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 3.2e-30 136.0 207 39.1
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.2e-30 136.0 179 42.5
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 4.1e-30 135.6 192 41.7
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 5.4e-30 135.2 188 41.5
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 2.0e-29 133.3 191 40.3
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 2.0e-29 133.3 179 43.0
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 2.0e-29 133.3 211 39.3
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 2.7e-29 132.9 204 37.3
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 2.7e-29 132.9 196 40.8
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 5.9e-29 131.7 190 40.0
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 5.9e-29 131.7 190 40.5
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 1.0e-28 131.0 210 38.1
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 1.3e-28 130.6 191 38.2
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 3.9e-28 129.0 201 38.8
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 3.9e-28 129.0 208 38.0
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 5.0e-28 128.6 189 41.3
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 5.0e-28 128.6 202 37.6
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 5.0e-28 128.6 186 39.8
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 6.6e-28 128.3 191 38.2
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 8.6e-28 127.9 191 40.3
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 8.6e-28 127.9 191 40.8
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 1.5e-27 127.1 204 37.3
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 1.5e-27 127.1 208 37.5
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 1.9e-27 126.7 203 37.9
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 1.9e-27 126.7 201 38.8
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 1.9e-27 126.7 204 38.2
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 3.3e-27 125.9 167 42.5
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 4.3e-27 125.6 205 39.0
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 4.3e-27 125.6 200 39.5
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 7.3e-27 124.8 199 37.7
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 7.3e-27 124.8 205 39.0
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 7.3e-27 124.8 181 42.0
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.2e-26 124.0 204 37.3
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 1.2e-26 124.0 202 38.6
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 1.6e-26 123.6 198 36.4
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 2.1e-26 123.2 199 39.2
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 3.6e-26 122.5 200 37.0
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 3.6e-26 122.5 199 37.2
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 3.6e-26 122.5 207 36.7
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 6.1e-26 121.7 187 39.6
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 1.0e-25 120.9 195 36.4
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.3e-25 119.8 179 42.5
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 2.3e-25 119.8 194 37.6
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 5.2e-25 118.6 209 36.4
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 6.8e-25 118.2 209 36.8
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 8.9e-25 117.9 195 36.4
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 8.9e-25 117.9 175 38.9
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 7.5e-24 114.8 202 37.1
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 1.7e-23 113.6 196 36.7
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 2.2e-23 113.2 186 38.2
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 2.9e-23 112.8 188 37.8
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 2.4e-22 109.8 176 38.6
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.6e-21 107.1 178 36.0
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 1.6e-21 107.1 178 36.5
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 1.6e-21 107.1 189 38.6
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 2.8e-18 96.3 148 41.2
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 6.2e-18 95.1 141 42.6
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.1e-17 94.4 108 43.5
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 1.4e-17 94.0 174 35.6
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 1.5e-16 90.5 100 46.0
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 7.1e-14 81.6 90 47.8
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 7.1e-14 81.6 90 50.0
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 1.6e-13 80.5 155 34.2
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 1.6e-13 80.5 235 30.2
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 1.6e-13 80.5 91 46.2
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 6.0e-13 78.6 90 48.9
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 7.8e-13 78.2 140 34.3
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 7.8e-13 78.2 140 34.3
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 6.6e-12 75.1 182 31.3
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 1.2e-10 70.9 98 37.8
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.1e-10 70.1 70 45.7
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 8.9e-09 64.7 58 53.4
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.3e-07 60.8 130 36.2
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 1.7e-07 60.5 75 40.0


User provided reference genes

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