Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 0.0e+00 1145.6 572 100.0
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 5.3e-251 870.9 571 75.3
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.2e-247 859.8 572 79.0
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 2.0e-189 666.4 578 57.4
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 4.6e-186 655.2 572 58.6
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.9e-185 652.1 578 58.3
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 3.9e-185 652.1 580 57.8
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 5.1e-185 651.7 580 57.8
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 1.5e-184 650.2 577 56.8
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 9.5e-184 647.5 573 56.9
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 1.2e-183 647.1 574 57.5
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 1.6e-183 646.7 577 56.5
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.7e-183 645.2 578 57.6
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 6.2e-183 644.8 578 57.8
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 8.1e-183 644.4 578 57.6
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.4e-182 643.7 575 56.9
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 1.8e-182 643.3 575 55.5
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 2.4e-182 642.9 576 54.0
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 2.4e-182 642.9 578 56.9
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 6.8e-182 641.3 576 55.4
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 1.2e-181 640.6 573 56.4
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 4.4e-181 638.6 576 54.2
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 4.4e-181 638.6 576 53.6
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 7.6e-181 637.9 576 55.4
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 9.9e-181 637.5 574 55.6
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 2.4e-179 632.9 576 56.2
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 2.4e-179 632.9 576 56.1
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 4.2e-179 632.1 572 54.9
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 5.4e-179 631.7 576 53.6
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 9.2e-179 630.9 573 54.6
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.6e-178 630.2 575 56.3
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 2.7e-178 629.4 577 56.0
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 2.7e-178 629.4 578 55.4
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 6.0e-178 628.2 577 54.6
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 2.3e-177 626.3 577 54.4
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 5.1e-177 625.2 577 54.6
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 1.9e-176 623.2 577 54.1
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 2.5e-176 622.9 578 55.9
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 4.3e-176 622.1 575 55.0
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 9.6e-176 620.9 576 53.6
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 9.6e-176 620.9 572 55.1
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 1.6e-175 620.2 579 54.6
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 3.6e-175 619.0 599 54.1
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 3.6e-175 619.0 575 53.4
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 6.2e-175 618.2 588 54.8
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 1.4e-174 617.1 576 53.5
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 1.8e-174 616.7 578 54.2
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 1.8e-174 616.7 574 55.1
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 3.1e-174 615.9 576 55.9
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 4.0e-174 615.5 578 53.6
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 6.9e-174 614.8 572 54.4
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 6.9e-174 614.8 576 55.4
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 9.0e-174 614.4 574 54.4
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 9.0e-174 614.4 576 54.9
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 1.5e-173 613.6 577 53.7
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 2.0e-173 613.2 572 54.0
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 7.6e-173 611.3 578 55.5
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 7.6e-173 611.3 575 53.4
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 9.9e-173 610.9 572 54.4
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 1.3e-172 610.5 575 55.3
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 3.8e-172 609.0 578 53.6
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 4.9e-172 608.6 574 54.5
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 1.4e-171 607.1 605 52.2
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 1.4e-171 607.1 577 52.9
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 1.9e-171 606.7 573 54.3
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 2.4e-171 606.3 574 54.5
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 3.5e-170 602.4 574 54.7
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 7.8e-170 601.3 579 53.7
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.7e-169 600.1 577 53.0
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 8.7e-169 597.8 574 53.5
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 8.7e-169 597.8 573 52.5
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 1.9e-168 596.7 576 53.8
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.8e-166 590.1 606 50.8
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 2.6e-165 586.3 573 52.0
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 9.9e-165 584.3 553 54.6
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 3.8e-164 582.4 552 54.0
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 3.2e-163 579.3 574 53.0
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 3.5e-162 575.9 576 52.3
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 1.3e-159 567.4 573 51.5
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 1.3e-159 567.4 573 51.5
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 6.4e-156 555.1 573 51.0
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 6.4e-156 555.1 646 46.7
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 8.4e-156 554.7 573 51.0
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 8.4e-156 554.7 573 51.0
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.1e-155 554.3 605 47.8
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 1.8e-150 537.0 528 51.5
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 5.5e-147 525.4 521 52.6
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 2.1e-146 523.5 547 51.4
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 1.8e-145 520.4 499 53.1
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 3.0e-145 519.6 514 52.1
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 3.0e-145 519.6 553 48.8
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 1.0e-140 504.6 682 41.3
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 7.9e-138 495.0 476 52.7
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.4e-137 494.2 430 59.8
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 3.0e-137 493.0 504 50.4
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 1.4e-134 484.2 425 57.6
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 1.5e-128 464.2 441 52.2
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 2.7e-122 443.4 386 56.2
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 1.1e-118 431.4 500 49.6
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 2.4e-118 430.3 606 41.4
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 5.3e-118 429.1 394 53.3
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 1.6e-117 427.6 457 48.8
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.2e-108 397.1 474 47.7
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 3.8e-108 396.4 600 39.7
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 8.5e-108 395.2 577 40.6
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 6.8e-105 385.6 368 55.4
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 1.3e-100 371.3 358 52.8
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 2.3e-89 334.0 294 57.8
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.3e-87 328.2 476 44.3
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 4.8e-58 229.9 245 48.2
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 1.1e-54 218.8 382 36.4
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 1.1e-54 218.8 487 30.8
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 1.3e-50 205.3 286 43.0
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 9.0e-49 199.1 208 48.1
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 2.1e-37 161.4 159 50.3
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 2.0e-32 144.8 746 22.4
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 2.1e-29 134.8 737 22.7
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 5.1e-28 130.2 136 51.5
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 2.5e-27 127.9 100 65.0
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 7.4e-27 126.3 152 42.1
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 5.3e-25 120.2 74 68.9
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 6.9e-25 119.8 122 50.8
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 4.5e-24 117.1 220 38.2
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 5.5e-22 110.2 115 47.0
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 5.5e-22 110.2 115 47.0
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 2.5e-19 101.3 340 25.0
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 4.5e-16 90.5 117 41.0
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.2e-15 88.2 73 58.9
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-13 82.0 56 66.1
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 1.0e-12 79.3 52 69.2
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 5.7e-11 73.6 89 42.7
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 7.4e-11 73.2 129 38.0
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 1.3e-10 72.4 45 71.1
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 6.3e-10 70.1 51 60.8
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 8.2e-10 69.7 80 45.0
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 1.0e-07 62.8 195 27.2
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 3.2e-06 57.8 93 35.5


User provided reference genes

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