Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 0.0e+00 1776.5 877 100.0
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 4.9e-296 1021.1 884 60.3
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 6.8e-282 974.2 917 60.3
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 1.1e-143 515.0 912 36.5
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 4.2e-114 416.8 979 33.0
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 1.5e-98 365.2 947 31.2
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.6e-97 361.7 837 34.2
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 6.7e-96 356.3 945 31.9
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 5.7e-95 353.2 955 30.7
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 3.1e-93 347.4 950 30.8
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 3.1e-93 347.4 947 31.3
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 2.7e-92 344.4 952 31.2
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 1.0e-91 342.4 931 30.8
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 2.2e-91 341.3 964 30.7
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.8e-91 340.5 960 30.8
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 5.0e-91 340.1 966 30.8
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 8.5e-91 339.3 964 31.0
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 7.2e-90 336.3 949 29.2
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.2e-89 335.5 940 30.1
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 3.6e-89 334.0 933 30.9
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 4.7e-89 333.6 923 31.0
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 9.8e-87 325.9 952 30.8
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.8e-86 324.3 954 30.7
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 4.8e-86 323.6 956 29.4
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 6.3e-86 323.2 963 30.4
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 8.3e-86 322.8 954 30.7
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.1e-85 322.4 952 30.3
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 9.1e-85 319.3 931 29.3
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.6e-84 318.5 944 30.0
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 3.5e-84 317.4 939 30.0
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 4.5e-84 317.0 927 29.9
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.0e-83 315.8 945 30.6
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 1.3e-83 315.5 925 30.3
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 6.5e-83 313.2 960 29.4
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 2.5e-82 311.2 977 30.1
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 2.5e-82 311.2 948 30.1
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 5.5e-82 310.1 937 29.7
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 5.5e-82 310.1 929 28.6
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 1.2e-81 308.9 930 29.8
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 1.6e-81 308.5 936 28.7
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 6.1e-81 306.6 901 29.2
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 2.3e-80 304.7 934 29.2
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 4.0e-80 303.9 779 32.2
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.2e-80 303.5 957 29.9
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 1.5e-79 302.0 950 28.6
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 2.0e-79 301.6 945 29.4
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 3.4e-79 300.8 925 30.2
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 2.2e-78 298.1 945 28.7
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 2.4e-77 294.7 937 28.1
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 4.1e-77 293.9 946 28.1
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 7.0e-77 293.1 735 32.2
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 1.7e-75 288.5 954 27.7
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.9e-75 287.7 941 29.9
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.8e-75 287.3 946 29.1
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 5.0e-75 287.0 966 28.3
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 5.0e-75 287.0 904 28.9
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 6.6e-75 286.6 751 31.3
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 8.6e-75 286.2 934 28.6
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 8.6e-75 286.2 932 28.0
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 7.3e-74 283.1 920 29.9
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.2e-73 282.3 933 28.2
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 6.1e-73 280.0 955 27.5
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 8.0e-73 279.6 934 28.3
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 1.0e-72 279.3 943 27.5
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 4.0e-72 277.3 919 28.7
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 8.9e-72 276.2 924 29.2
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 2.0e-71 275.0 930 27.4
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 5.7e-71 273.5 840 30.4
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 9.8e-71 272.7 947 27.9
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 1.3e-70 272.3 911 26.8
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.9e-70 271.2 646 32.7
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 9.2e-69 266.2 861 30.1
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 2.7e-68 264.6 950 27.8
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 4.6e-68 263.8 901 27.6
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 1.3e-67 262.3 971 27.8
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 1.7e-67 261.9 796 31.2
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 3.9e-67 260.8 728 27.2
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.1e-66 259.2 909 28.9
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 2.5e-66 258.1 924 28.0
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 9.5e-66 256.1 838 28.0
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 3.6e-65 254.2 920 28.4
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 6.2e-65 253.4 898 28.5
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 6.2e-65 253.4 919 28.8
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 1.8e-64 251.9 819 28.0
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 3.1e-64 251.1 937 28.2
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 5.2e-64 250.4 432 38.4
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 1.5e-63 248.8 919 27.1
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 3.7e-62 244.2 904 28.3
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 2.4e-61 241.5 941 27.4
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 3.2e-61 241.1 896 27.2
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 5.4e-61 240.4 919 26.6
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 9.2e-61 239.6 896 27.0
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 1.6e-60 238.8 933 26.5
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 4.6e-60 237.3 925 27.9
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 3.0e-59 234.6 891 26.7
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 3.0e-59 234.6 729 28.5
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 5.0e-59 233.8 938 27.5
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 9.5e-58 229.6 477 34.2
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.4e-53 214.9 746 28.7
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.4e-53 214.9 529 30.1
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 4.6e-52 210.7 577 29.6
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 1.3e-51 209.1 516 32.2
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 1.6e-44 185.7 593 30.2
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 4.6e-44 184.1 530 30.0
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.5e-42 178.3 428 33.2
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 2.5e-42 178.3 482 28.2
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 9.6e-42 176.4 772 27.6
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 5.8e-39 167.2 580 26.4
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 8.4e-38 163.3 296 37.2
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 5.4e-37 160.6 355 31.5
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 5.1e-35 154.1 327 33.9
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.1e-32 146.4 476 26.5
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 2.4e-29 135.2 516 24.8
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 9.3e-29 133.3 188 39.4
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 7.9e-28 130.2 494 28.1
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.3e-27 129.4 474 28.3
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 3.9e-27 127.9 418 28.2
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 3.9e-27 127.9 431 27.8
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 3.1e-24 118.2 206 37.4
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 2.0e-23 115.5 801 23.3
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 3.8e-22 111.3 330 31.8
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.5e-18 99.4 546 22.2
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.5e-18 99.4 395 23.8
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 5.8e-15 87.4 601 22.0
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 2.9e-14 85.1 724 21.5
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.8e-14 84.7 185 35.1
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 4.9e-14 84.3 271 24.0
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 4.9e-14 84.3 271 24.0
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 6.5e-14 84.0 289 30.4
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 1.4e-13 82.8 585 21.9
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 7.1e-13 80.5 195 28.2
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 9.6e-10 70.1 332 22.6
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 1.3e-09 69.7 91 35.2
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 6.3e-09 67.4 173 27.2
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 8.2e-09 67.0 242 28.9
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.8e-08 65.9 173 26.6
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 1.8e-08 65.9 280 27.1


User provided reference genes

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