Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0221100 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D293029 9.7e-186 653.3 318 100.0
Os05g0146100 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D298887 3.2e-72 276.2 296 48.6
Os05g0145700 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D301298 4.8e-52 209.1 248 42.7
Os05g0146900 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D297647 4.2e-48 196.1 293 40.6
Os03g0663100 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D296914 1.2e-42 177.9 264 36.0
Os03g0661800 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D299399 4.5e-42 176.0 298 36.6
Os08g0144400 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D293916 3.5e-34 149.8 262 32.8
Os05g0157600 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D295619 5.4e-27 125.9 266 27.4
Os05g0161400 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D299027 3.5e-26 123.2 269 30.5
Os05g0158200 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D298992 7.8e-26 122.1 266 27.1
Os05g0158400 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D301236 7.8e-26 122.1 266 28.9
Os08g0145600 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D293310 1.9e-24 117.5 170 35.3
Os05g0160600 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D294322 1.6e-23 114.4 262 29.0
Os07g0231900 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D298415 1.2e-18 98.2 269 26.8
Os01g0278600 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 1.7e-17 94.4 264 27.3
DCAR_015677 Daucus carota HOM05D012205 ORTHO05D014781 2.9e-12 77.0 269 26.0
Manes.S095408 Manihot esculenta HOM05D006716 ORTHO05D008396 3.7e-12 76.6 307 25.7
TWI31G0239 Tripterygium wilfordii HOM05D006716 ORTHO05D008396 3.7e-12 76.6 300 28.7
DCAR_004702 Daucus carota HOM05D012205 ORTHO05D014781 6.4e-12 75.9 218 30.3
Os09g0436700 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 1.1e-11 75.1 274 24.5
TPR.G36640 Trifolium pratense HOM05D006716 ORTHO05D008396 1.9e-11 74.3 291 25.4
DCAR_016238 Daucus carota HOM05D012205 ORTHO05D014781 2.4e-11 73.9 266 26.7
PSO478G1238 Papaver somniferum HOM05D006716 ORTHO05D008396 2.4e-11 73.9 257 27.6
Rhsim02G0098700 Rhododendron simsii HOM05D006716 ORTHO05D008396 4.1e-11 73.2 299 26.1
PSO478G4756 Papaver somniferum HOM05D006716 ORTHO05D008396 5.4e-11 72.8 305 26.9
vmacro12393 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 5.4e-11 72.8 280 26.4
Rhsim09G0048400 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.6e-10 71.2 204 28.9
TPR.G40231 Trifolium pratense HOM05D006716 ORTHO05D008396 2.7e-10 70.5 292 25.7
Mapoly0047s0084 Marchantia polymorpha HOM05D005214 ORTHO05D005861 3.5e-10 70.1 297 25.9
Nitab4.5_0001339g0090 Nicotiana tabacum HOM05D006716 ORTHO05D008396 3.5e-10 70.1 295 25.8
Os04g0307800 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D294181 3.5e-10 70.1 64 57.8
AUR62000783 Chenopodium quinoa HOM05D005214 ORTHO05D005861 4.6e-10 69.7 277 25.3
CSS0050127 Camellia sinensis var. sinensis HOM05D006716 ORTHO05D008396 7.8e-10 68.9 299 25.4
Potri.018G001550 Populus trichocarpa HOM05D006716 ORTHO05D008396 1.0e-09 68.6 296 24.7
CDE09G0722 Ceratophyllum demersum HOM05D005214 ORTHO05D005861 1.7e-09 67.8 271 25.1
Prupe.6G322200 Prunus persica HOM05D005214 ORTHO05D005861 1.7e-09 67.8 300 24.0
DCAR_016243 Daucus carota HOM05D012205 ORTHO05D014781 2.3e-09 67.4 271 24.7
Hund07090 Selenicereus undatus HOM05D005214 ORTHO05D005861 3.0e-09 67.0 279 26.9
Aqoxy4G01949 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 3.9e-09 66.6 307 26.1
EL10Ac4g09934 Beta vulgaris HOM05D005214 ORTHO05D005861 3.9e-09 66.6 290 24.8
Os03g0846400 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 3.9e-09 66.6 194 28.4
Aqoxy2G03015 Aquilegia oxysepala HOM05D005214 ORTHO05D005861 6.6e-09 65.9 294 25.5
AUR62029714 Chenopodium quinoa HOM05D012205 ORTHO05D014781 6.6e-09 65.9 249 26.5
Zm00001eb168260 Zea mays HOM05D005214 ORTHO05D005861 8.6e-09 65.5 306 24.8
Aqoxy4G01948 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 3.3e-08 63.5 293 22.9
PSO017G6103 Papaver somniferum HOM05D006716 ORTHO05D008396 3.3e-08 63.5 198 26.8
PSO541G2582 Papaver somniferum HOM05D005214 ORTHO05D005861 3.3e-08 63.5 295 24.7
Rhsim02G0098800 Rhododendron simsii HOM05D006716 ORTHO05D008396 3.3e-08 63.5 284 25.4
Lj9A35T20 Lonicera japonica HOM05D006716 ORTHO05D008396 4.3e-08 63.2 292 24.3
Peaxi162Scf00663g00027 Petunia axillaris HOM05D006716 ORTHO05D008396 4.3e-08 63.2 321 21.8
FAN02G3954 Fragaria x ananassa HOM05D005214 ORTHO05D005861 5.6e-08 62.8 202 26.2
Os01g0776500 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 5.6e-08 62.8 196 28.1
DCAR_019182 Daucus carota HOM05D012205 ORTHO05D014781 7.3e-08 62.4 271 25.1
vmacro15746 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 7.3e-08 62.4 238 27.7
Ca_29015_v3 Cicer arietinum L. HOM05D001104 ORTHO05D005861 9.5e-08 62.0 203 25.6
Hma1.2p1_0154F.1_g068000 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 9.5e-08 62.0 302 21.9
PSO675G4608 Papaver somniferum HOM05D005214 ORTHO05D005861 9.5e-08 62.0 291 25.1
SMO364G0425 Selaginella moellendorffii HOM05D005214 ORTHO05D005861 1.2e-07 61.6 274 24.8
Os12g0141600 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 1.6e-07 61.2 201 26.9
vmacro12389 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 1.6e-07 61.2 278 24.8
CBR_g39175 Chara braunii HOM05D005214 ORTHO05D005861 2.1e-07 60.8 240 26.2
ATR0743G060 Amborella trichopoda HOM05D005214 ORTHO05D005861 2.8e-07 60.5 296 22.0
CAN.G497.65 Capsicum annuum HOM05D006716 ORTHO05D008396 6.2e-07 59.3 318 24.8
Medtr5g464730 Medicago truncatula HOM05D006716 ORTHO05D008396 6.2e-07 59.3 291 24.1
RcHm_v2.0_Chr3g0455481 Rosa chinensis HOM05D005214 ORTHO05D005861 8.1e-07 58.9 301 23.6
Lsat_1_v5_gn_9_87421 Lactuca sativa HOM05D005214 ORTHO05D005861 1.1e-06 58.5 295 25.1
Rhsim07G0026700 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.4e-06 58.2 326 24.2
Cc00_g10460 Coffea canephora HOM05D005214 ORTHO05D005861 1.8e-06 57.8 200 25.0
Ah.10g035290 Amaranthus hybridus HOM05D006716 ORTHO05D008396 2.3e-06 57.4 101 33.7
Hma1.2p1_0310F.1_g120920 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 3.1e-06 57.0 310 23.9
Os03g0608800 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 5.2e-06 56.2 334 23.7
vmacro15749 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 5.2e-06 56.2 253 25.3
Ah.04g150360 Amaranthus hybridus HOM05D012205 ORTHO05D014781 6.8e-06 55.8 103 35.9
Sopen02g027470 Solanum pennellii HOM05D006716 ORTHO05D008396 6.8e-06 55.8 300 24.7
SMO145G0086 Selaginella moellendorffii HOM05D001104 ORTHO05D006285 8.9e-06 55.5 217 23.5


User provided reference genes

Program Settings