Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 2.5e-184 648.7 337 100.0
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 4.1e-102 375.6 339 67.8
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 4.1e-94 349.0 338 63.3
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 1.1e-54 218.0 189 64.6
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 3.5e-24 116.7 349 34.1
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 2.5e-22 110.5 310 33.2
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 3.2e-22 110.2 291 34.4
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 5.5e-22 109.4 338 31.4
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 6.1e-21 105.9 307 31.9
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 2.6e-19 100.5 206 35.0
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 5.7e-19 99.4 306 32.4
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 7.5e-19 99.0 351 29.6
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 7.5e-19 99.0 336 32.1
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 9.7e-19 98.6 193 35.8
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.3e-18 98.2 306 31.4
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 1.7e-18 97.8 363 29.2
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 1.7e-18 97.8 363 29.2
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.2e-18 97.4 213 32.4
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.8e-18 97.1 248 35.1
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 2.8e-18 97.1 302 32.1
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.7e-18 96.7 306 31.4
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 6.3e-18 95.9 193 34.2
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 1.1e-17 95.1 176 35.2
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 5.3e-17 92.8 349 28.9
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 9.1e-17 92.0 305 29.2
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 1.6e-16 91.3 348 29.6
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 2.0e-16 90.9 308 33.1
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 2.0e-16 90.9 311 31.5
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 2.0e-16 90.9 350 30.0
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 2.7e-16 90.5 284 30.6
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 2.7e-16 90.5 327 29.7
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 2.7e-16 90.5 220 31.4
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.7e-16 90.5 175 34.3
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 2.7e-16 90.5 353 29.2
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 3.5e-16 90.1 338 30.8
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 3.5e-16 90.1 309 29.4
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 3.5e-16 90.1 309 29.4
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 4.5e-16 89.7 338 29.0
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 5.9e-16 89.4 328 31.1
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 5.9e-16 89.4 311 28.0
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 7.7e-16 89.0 93 47.3
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 7.7e-16 89.0 191 34.6
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.0e-15 88.6 178 33.7
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 1.7e-15 87.8 313 28.4
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.7e-15 87.8 339 27.4
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 2.2e-15 87.4 223 31.8
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 2.2e-15 87.4 182 36.8
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 2.9e-15 87.0 305 28.9
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 3.8e-15 86.7 308 28.9
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 3.8e-15 86.7 192 32.3
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 1.5e-14 84.7 101 45.5
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.9e-14 84.3 328 27.7
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 2.5e-14 84.0 183 33.3
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 2.5e-14 84.0 320 26.2
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 2.5e-14 84.0 315 29.2
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 2.5e-14 84.0 310 29.4
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 2.5e-14 84.0 173 35.8
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 3.2e-14 83.6 192 36.5
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 3.2e-14 83.6 318 29.9
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 4.2e-14 83.2 224 31.7
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 4.2e-14 83.2 349 28.7
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 7.2e-14 82.4 167 32.3
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 9.4e-14 82.0 157 35.7
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 3.6e-13 80.1 320 28.1
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.6e-13 80.1 307 30.0
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 3.6e-13 80.1 356 29.2
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 3.6e-13 80.1 349 30.1
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 4.7e-13 79.7 175 33.1
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 4.7e-13 79.7 329 28.6
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 8.0e-13 79.0 193 31.6
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 8.0e-13 79.0 193 31.6
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 8.0e-13 79.0 168 30.4
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 1.0e-12 78.6 211 33.2
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 4.0e-12 76.6 302 28.5
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 5.2e-12 76.3 221 30.8
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 6.8e-12 75.9 149 34.9
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 8.8e-12 75.5 191 31.9
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 8.8e-12 75.5 149 33.6
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 1.5e-11 74.7 115 40.0
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 3.4e-11 73.6 354 26.0
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.4e-11 73.2 130 36.2
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 4.4e-11 73.2 177 33.3
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 5.7e-11 72.8 175 31.4
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 7.5e-11 72.4 357 26.6
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 7.5e-11 72.4 350 28.3
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 7.5e-11 72.4 350 28.3
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 9.8e-11 72.0 287 28.2
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 9.8e-11 72.0 305 28.2
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 9.8e-11 72.0 329 26.7
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 2.2e-10 70.9 289 27.3
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.2e-10 70.9 180 34.4
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 3.7e-10 70.1 149 32.9
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 6.3e-10 69.3 180 34.4
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 1.8e-09 67.8 329 28.0
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 2.4e-09 67.4 354 25.7
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 2.4e-09 67.4 178 34.8
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 3.1e-09 67.0 59 52.5
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 3.1e-09 67.0 344 28.8
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 4.1e-09 66.6 187 29.9
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 5.4e-09 66.2 334 26.6
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 7.0e-09 65.9 54 55.6
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 7.0e-09 65.9 183 28.4
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 7.0e-09 65.9 183 28.4
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 7.0e-09 65.9 183 28.4
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 7.0e-09 65.9 56 53.6
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 7.0e-09 65.9 166 34.3
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 9.1e-09 65.5 125 36.0
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 1.2e-08 65.1 183 29.5
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 1.2e-08 65.1 287 27.5
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 1.2e-08 65.1 216 33.8
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 1.2e-08 65.1 214 28.0
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.6e-08 64.7 57 52.6
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 1.6e-08 64.7 349 27.5
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 1.6e-08 64.7 147 30.6
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 1.6e-08 64.7 179 34.6
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 2.0e-08 64.3 48 62.5
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 2.7e-08 63.9 51 56.9
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 2.7e-08 63.9 184 28.8
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 5.9e-08 62.8 149 30.9
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 7.7e-08 62.4 183 29.0
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 7.7e-08 62.4 96 40.6
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.0e-07 62.0 166 34.9
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 1.0e-07 62.0 72 44.4
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 1.3e-07 61.6 218 28.4
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 2.9e-07 60.5 290 26.2
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 2.9e-07 60.5 174 32.2
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 3.8e-07 60.1 51 52.9
Mapoly0001s0089 Marchantia polymorpha HOM05D001846 ORTHO05D005785 1.9e-06 57.8 106 30.2
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 2.5e-06 57.4 51 51.0
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 2.5e-06 57.4 51 51.0
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 2.5e-06 57.4 51 51.0
AagrBONN_evm.TU.Sc2ySwM_228.2778 Anthoceros agrestis HOM05D019331 ORTHO05D005785 9.5e-06 55.5 90 36.7


User provided reference genes

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