Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 5.2e-104 381.3 232 100.0
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 8.4e-62 241.1 202 67.3
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 1.2e-44 184.1 160 60.6
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 4.6e-44 182.2 153 62.1
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 4.6e-44 182.2 180 57.8
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 6.0e-44 181.8 177 58.8
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.3e-43 180.6 174 60.3
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 5.1e-43 178.7 176 56.2
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 5.1e-43 178.7 176 56.2
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 5.1e-43 178.7 158 62.0
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 1.1e-42 177.6 159 62.3
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 1.6e-41 173.7 163 60.1
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 2.1e-41 173.3 153 58.8
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.8e-41 172.9 154 59.1
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 2.8e-41 172.9 165 60.0
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 2.8e-41 172.9 159 61.6
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 3.7e-41 172.6 163 58.9
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 1.1e-40 171.0 167 56.3
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 1.4e-40 170.6 153 60.8
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.8e-40 170.2 176 56.2
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 4.0e-40 169.1 177 54.8
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 4.0e-40 169.1 155 60.0
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 4.0e-40 169.1 145 63.4
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 6.9e-40 168.3 172 55.8
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 9.0e-40 167.9 171 54.4
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.0e-39 166.8 164 56.1
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 2.6e-39 166.4 153 60.1
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 2.6e-39 166.4 125 68.0
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 3.4e-39 166.0 176 54.0
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 3.4e-39 166.0 176 54.0
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 4.5e-39 165.6 162 58.6
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 4.5e-39 165.6 171 55.0
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 5.8e-39 165.2 176 54.0
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 7.6e-39 164.9 154 59.1
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 7.6e-39 164.9 154 59.1
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 1.3e-38 164.1 149 60.4
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 1.7e-38 163.7 159 58.5
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.7e-38 163.7 224 46.0
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 3.8e-38 162.5 150 59.3
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 3.8e-38 162.5 157 58.6
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 4.9e-38 162.2 177 53.7
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 4.9e-38 162.2 177 54.2
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 4.9e-38 162.2 227 45.8
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 6.4e-38 161.8 155 58.1
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 8.4e-38 161.4 168 55.4
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 8.4e-38 161.4 153 56.9
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 8.4e-38 161.4 149 61.1
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 1.1e-37 161.0 153 60.8
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 1.1e-37 161.0 152 57.9
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 1.4e-37 160.6 172 54.7
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 1.9e-37 160.2 143 61.5
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 2.4e-37 159.8 161 55.9
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 2.4e-37 159.8 152 59.2
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 2.4e-37 159.8 188 53.2
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 3.2e-37 159.5 141 60.3
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 3.2e-37 159.5 141 60.3
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 3.2e-37 159.5 156 57.7
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 3.2e-37 159.5 159 54.7
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 4.2e-37 159.1 145 64.1
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 5.5e-37 158.7 119 68.9
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 7.1e-37 158.3 156 59.0
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 1.2e-36 157.5 153 57.5
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 1.2e-36 157.5 153 56.2
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 1.6e-36 157.1 157 59.2
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 1.6e-36 157.1 123 65.9
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 1.6e-36 157.1 158 57.0
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 2.1e-36 156.8 168 56.5
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.1e-36 156.8 139 61.2
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.1e-36 156.8 139 61.2
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 3.5e-36 156.0 153 55.6
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 4.6e-36 155.6 102 76.5
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 4.6e-36 155.6 153 58.8
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 6.0e-36 155.2 173 54.3
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 6.0e-36 155.2 140 62.1
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 6.0e-36 155.2 167 56.9
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 6.0e-36 155.2 174 55.2
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 7.9e-36 154.8 179 51.4
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 7.9e-36 154.8 173 53.2
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 1.0e-35 154.5 164 54.9
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 1.8e-35 153.7 149 56.4
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 1.8e-35 153.7 128 64.1
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 6.7e-35 151.8 110 68.2
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 1.1e-34 151.0 114 67.5
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 1.1e-34 151.0 183 46.4
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 1.9e-34 150.2 172 53.5
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 4.3e-34 149.1 135 61.5
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 5.6e-34 148.7 99 74.7
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 4.8e-33 145.6 145 60.0
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 2.4e-32 143.3 153 54.2
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 2.0e-31 140.2 176 48.3
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 4.5e-31 139.0 146 55.5
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 5.8e-31 138.7 142 58.5
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 7.6e-31 138.3 130 58.5
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 2.2e-30 136.7 151 54.3
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 2.9e-30 136.3 164 51.8
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 2.9e-30 136.3 138 55.8
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 2.9e-30 136.3 138 55.8
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 2.9e-30 136.3 128 56.2
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 4.9e-30 135.6 138 58.0
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 4.9e-30 135.6 134 58.2
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 1.9e-29 133.7 96 70.8
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 1.9e-29 133.7 96 70.8
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 4.2e-29 132.5 104 65.4
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 5.5e-29 132.1 96 69.8
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 5.5e-29 132.1 154 51.9
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 6.0e-28 128.6 104 64.4
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 6.0e-28 128.6 85 71.8
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.8e-24 117.1 81 66.7
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 9.4e-21 104.8 108 50.0
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 8.8e-19 98.2 176 39.2
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 1.3e-14 84.3 91 52.7
FAN08G0700 Fragaria x ananassa HOM05D000032 ORTHO05D020587 2.2e-06 57.0 109 34.9
Ciclev10004206m.g Citrus clementina HOM05D000032 ORTHO05D005217 8.5e-06 55.1 166 31.3


User provided reference genes

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