Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0210900 Oryza sativa ssp. japonica HOM05D007659 ORTHO05D009227 8.8e-41 169.9 86 100.0
Zm00001eb400430 Zea mays HOM05D007659 ORTHO05D009227 2.1e-18 95.5 59 79.7
ATR0111G019 Amborella trichopoda HOM05D007659 ORTHO05D009227 8.3e-15 83.6 56 66.1
MD12G1196500 Malus domestica HOM05D007659 ORTHO05D009227 1.8e-14 82.4 62 61.3
Peaxi162Scf00038g00725 Petunia axillaris HOM05D007659 ORTHO05D009227 1.8e-14 82.4 62 61.3
Haze_19124 Corylus avellana HOM05D007659 ORTHO05D009227 2.4e-14 82.0 62 62.9
PGSC0003DMG400011214 Solanum tuberosum HOM05D007659 ORTHO05D009227 4.1e-14 81.3 62 59.7
Haze_19129 Corylus avellana HOM05D007659 ORTHO05D009227 5.4e-14 80.9 57 66.7
PGR102G1560 Punica granatum HOM05D007659 ORTHO05D009227 5.4e-14 80.9 62 59.7
Sabra06G0137200 Salix brachista HOM05D007659 ORTHO05D009227 5.4e-14 80.9 61 57.4
Actinidia28561 Actinidia chinensis HOM05D007659 ORTHO05D009227 7.0e-14 80.5 60 65.0
Haze_19128 Corylus avellana HOM05D007659 ORTHO05D009227 7.0e-14 80.5 57 66.7
Haze_19136 Corylus avellana HOM05D007659 ORTHO05D009227 7.0e-14 80.5 57 66.7
Eucgr.C02516 Eucalyptus grandis HOM05D007659 ORTHO05D009227 7.0e-14 80.5 65 56.9
SalBow6G0978 Salvia bowleyana HOM05D007659 ORTHO05D009227 9.1e-14 80.1 63 55.6
GSVIVG01023691001 Vitis vinifera HOM05D007659 ORTHO05D009227 9.1e-14 80.1 62 62.9
CDE04G0159 Ceratophyllum demersum HOM05D007659 ORTHO05D009227 1.2e-13 79.7 64 57.8
Duzib187G1272 Durio zibethinus HOM05D007659 ORTHO05D009227 1.2e-13 79.7 62 61.3
Solyc07g006040.3 Solanum lycopersicum HOM05D007659 ORTHO05D009227 1.2e-13 79.7 62 58.1
Aqoxy7G03300 Aquilegia oxysepala HOM05D007659 ORTHO05D009227 1.6e-13 79.3 57 66.7
Eucgr.L01549 Eucalyptus grandis HOM05D007659 ORTHO05D009227 1.6e-13 79.3 65 56.9
MD04G1182900 Malus domestica HOM05D007659 ORTHO05D009227 1.6e-13 79.3 51 70.6
MSTRG.6163 Avicennia marina HOM05D007659 ORTHO05D009227 2.0e-13 79.0 58 60.3
A03p60380 Brassica napus HOM05D007659 ORTHO05D009227 2.0e-13 79.0 57 66.7
BraA03t15078Z Brassica rapa HOM05D007659 ORTHO05D009227 2.0e-13 79.0 57 66.7
Glyma.17G071000 Glycine max HOM05D007659 ORTHO05D009227 2.0e-13 79.0 65 56.9
HPP92_006698 Vanilla planifolia HOM05D007659 ORTHO05D009227 2.0e-13 79.0 65 56.9
Cc00_g30920 Coffea canephora HOM05D007659 ORTHO05D009227 2.7e-13 78.6 60 63.3
Cc02_g28880 Coffea canephora HOM05D007659 ORTHO05D009227 2.7e-13 78.6 57 63.2
MELO3C010198.2 Cucumis melo HOM05D007659 ORTHO05D009227 2.7e-13 78.6 67 56.7
Aa31LG2G19540 Aethionema arabicum HOM05D007659 ORTHO05D009227 3.5e-13 78.2 66 56.1
AT4G30845 Arabidopsis thaliana HOM05D007659 ORTHO05D009227 3.5e-13 78.2 58 67.2
BcaNung02735 Brassica carinata HOM05D007659 ORTHO05D009227 3.5e-13 78.2 60 65.0
C07p58250 Brassica napus HOM05D007659 ORTHO05D009227 3.5e-13 78.2 57 64.9
BolC7t46283H Brassica oleracea HOM05D007659 ORTHO05D009227 3.5e-13 78.2 57 64.9
Manes.06G031900 Manihot esculenta HOM05D007659 ORTHO05D009227 3.5e-13 78.2 58 58.6
QL02p094226 Quercus lobata HOM05D007659 ORTHO05D009227 3.5e-13 78.2 62 59.7
BcaNung01556 Brassica carinata HOM05D007659 ORTHO05D009227 4.5e-13 77.8 57 64.9
Cfa019408 Carpinus fangiana HOM05D007659 ORTHO05D009227 4.5e-13 77.8 62 58.1
RcHm_v2.0_Chr4g0405451 Rosa chinensis HOM05D007659 ORTHO05D009227 5.9e-13 77.4 62 59.7
AL7G21270 Arabidopsis lyrata HOM05D007659 ORTHO05D009227 7.7e-13 77.0 60 65.0
Carub.0007s0971 Capsella rubella HOM05D007659 ORTHO05D009227 7.7e-13 77.0 57 61.4
Migut.J01394 Erythranthe guttata HOM05D007659 ORTHO05D009227 7.7e-13 77.0 58 58.6
Rhsim01G0023600 Rhododendron simsii HOM05D007659 ORTHO05D009227 7.7e-13 77.0 57 61.4
TWI63G1302 Tripterygium wilfordii HOM05D007659 ORTHO05D009227 7.7e-13 77.0 65 53.8
EL10Ac4g09658 Beta vulgaris HOM05D007659 ORTHO05D009227 1.0e-12 76.6 58 58.6
Dinv41341 Davidia involucrata HOM05D007659 ORTHO05D009227 1.0e-12 76.6 62 56.5
unitig_736.g22510 Utricularia gibba HOM05D007659 ORTHO05D009227 1.0e-12 76.6 60 56.7
ClCG06G012660 Citrullus lanatus HOM05D007659 ORTHO05D009227 1.3e-12 76.3 67 53.7
CsaV3_1G029210 Cucumis sativus L. HOM05D007659 ORTHO05D009227 1.3e-12 76.3 67 55.2
Thhalv10026581m.g Eutrema salsugineum HOM05D007659 ORTHO05D009227 1.3e-12 76.3 60 65.0
Gohir.A04G040700 Gossypium hirsutum HOM05D007659 ORTHO05D009227 1.3e-12 76.3 62 58.1
Gohir.D05G342500 Gossypium hirsutum HOM05D007659 ORTHO05D009227 1.3e-12 76.3 62 58.1
Gorai.009G368800 Gossypium raimondii HOM05D007659 ORTHO05D009227 1.3e-12 76.3 62 58.1
Lj4g0008058 Lotus japonicus HOM05D007659 ORTHO05D009227 1.3e-12 76.3 60 60.0
Nitab4.5_0016001g0010 Nicotiana tabacum HOM05D007659 ORTHO05D009227 1.3e-12 76.3 57 59.6
Haze_27708 Corylus avellana HOM05D007659 ORTHO05D009227 1.7e-12 75.9 62 56.5
FvH4_4g09760 Fragaria vesca HOM05D007659 ORTHO05D009227 1.7e-12 75.9 62 56.5
Sed0026034 Sechium edule HOM05D007659 ORTHO05D009227 1.7e-12 75.9 67 53.7
CARHR238720 Cardamine hirsuta HOM05D007659 ORTHO05D009227 2.3e-12 75.5 65 60.0
Hund07205 Selenicereus undatus HOM05D007659 ORTHO05D009227 2.3e-12 75.5 52 63.5
Thecc.09G154300 Theobroma cacao HOM05D007659 ORTHO05D009227 2.3e-12 75.5 62 56.5
FAN07G1615 Fragaria x ananassa HOM05D007659 ORTHO05D009227 2.9e-12 75.1 62 56.5
FAN22G0789 Fragaria x ananassa HOM05D007659 ORTHO05D009227 2.9e-12 75.1 62 56.5
PSO782G2453 Papaver somniferum HOM05D007659 ORTHO05D009227 2.9e-12 75.1 54 63.0
TPR.G24875 Trifolium pratense HOM05D007659 ORTHO05D009227 2.9e-12 75.1 58 58.6
Hma1.2p1_1084F.1_g255330 Hydrangea macrophylla HOM05D007659 ORTHO05D009227 3.8e-12 74.7 62 58.1
CANSAT11G2634 Cannabis sativa HOM05D007659 ORTHO05D009227 5.0e-12 74.3 57 59.6
Potri.006G180200 Populus trichocarpa HOM05D007659 ORTHO05D009227 5.0e-12 74.3 48 64.6
Ah.06g188510 Amaranthus hybridus HOM05D000987 ORTHO05D000831 6.6e-12 73.9 60 56.7
Sc06g0005340 Simmondsia chinensis HOM05D007659 ORTHO05D009227 6.6e-12 73.9 57 59.6
VMungo1215G2964 Vigna mungo HOM05D007659 ORTHO05D009227 8.6e-12 73.6 57 54.4
Lsat_1_v5_gn_7_50920 Lactuca sativa HOM05D007659 ORTHO05D009227 1.1e-11 73.2 53 58.5
Phvul.003G153300 Phaseolus vulgaris HOM05D007659 ORTHO05D009227 1.1e-11 73.2 65 49.2
Ca_21156_v3 Cicer arietinum L. HOM05D007659 ORTHO05D009227 1.5e-11 72.8 57 56.1
Medtr4g130250 Medicago truncatula HOM05D007659 ORTHO05D009227 1.5e-11 72.8 57 56.1
Prupe.1G101900 Prunus persica HOM05D007659 ORTHO05D009227 1.5e-11 72.8 58 55.2
Ciclev10009916m.g Citrus clementina HOM05D007659 ORTHO05D009227 1.9e-11 72.4 53 62.3
Haze_19137 Corylus avellana HOM05D007659 ORTHO05D009227 1.9e-11 72.4 57 56.1
HanXRQChr03g0066011 Helianthus annuus HOM05D007659 ORTHO05D009227 1.9e-11 72.4 49 67.3
Nn8g40114 Nelumbo nucifera HOM05D007659 ORTHO05D009227 1.9e-11 72.4 62 59.7
THA.LOC104803555 Tarenaya hassleriana HOM05D007659 ORTHO05D009227 1.9e-11 72.4 58 60.3
Psat4g010200 Pisum sativum HOM05D007659 ORTHO05D009227 3.3e-11 71.6 62 51.6
Haze_19130 Corylus avellana HOM05D007659 ORTHO05D009227 4.2e-11 71.2 53 62.3
PSO063G0802 Papaver somniferum HOM05D007659 ORTHO05D009227 4.2e-11 71.2 55 58.2
Lalb_Chr12g0198851 Lupinus albus HOM05D007659 ORTHO05D009227 5.5e-11 70.9 64 48.4
Cfa020779 Carpinus fangiana HOM05D001390 ORTHO05D001522 9.5e-11 70.1 62 56.5
arahy.Tifrunner.gnm1.ann1.FWLQ6H Arachis hypogaea HOM05D007659 ORTHO05D009227 1.6e-10 69.3 58 51.7
arahy.Tifrunner.gnm1.ann1.KUG4GU Arachis hypogaea HOM05D007659 ORTHO05D009227 1.6e-10 69.3 58 51.7
CiPaw.15G164100 Carya illinoinensis HOM05D007659 ORTHO05D009227 1.6e-10 69.3 66 54.5
vmacro13049 Vaccinium macrocarpon HOM05D007659 ORTHO05D009227 2.8e-10 68.6 77 48.1
Haze_19127 Corylus avellana HOM05D007659 ORTHO05D009227 8.0e-10 67.0 58 53.4
Pp3c17_8590 Physcomitrium patens HOM05D007659 ORTHO05D009227 1.2e-08 63.2 52 55.8
Mapoly0004s0134 Marchantia polymorpha HOM05D007659 ORTHO05D009227 2.0e-08 62.4 48 60.4
CBR_g10976 Chara braunii HOM05D007659 ORTHO05D009227 2.6e-08 62.0 76 46.1
AagrBONN_evm.TU.Sc2ySwM_228.2308 Anthoceros agrestis HOM05D007659 ORTHO05D009227 9.8e-08 60.1 59 54.2


User provided reference genes

Program Settings