Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 4.3e-179 631.3 344 100.0
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 6.1e-109 398.3 261 76.6
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 1.9e-102 376.7 289 62.3
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 1.4e-100 370.5 291 61.9
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 2.3e-100 369.8 293 61.8
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 3.9e-100 369.0 296 60.5
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.0e-99 366.7 292 61.0
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 2.6e-99 366.3 296 60.8
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 7.4e-99 364.8 291 61.9
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 1.7e-98 363.6 293 60.1
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 2.2e-98 363.2 293 60.4
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 2.8e-98 362.8 293 61.1
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 2.8e-98 362.8 287 61.7
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 3.7e-98 362.5 291 60.1
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 3.7e-98 362.5 291 58.8
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 4.8e-98 362.1 291 62.5
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 4.1e-97 359.0 291 59.5
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 1.2e-96 357.5 292 59.9
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 1.2e-96 357.5 288 59.0
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 2.0e-96 356.7 285 60.4
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 2.0e-96 356.7 291 60.8
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 3.5e-96 355.9 294 59.2
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 3.5e-96 355.9 290 58.6
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 5.9e-96 355.1 285 61.1
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 1.0e-95 354.4 290 59.3
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 1.3e-95 354.0 295 59.3
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 1.7e-95 353.6 290 58.6
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 3.8e-95 352.4 289 59.9
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 6.5e-95 351.7 291 57.7
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 6.5e-95 351.7 288 59.4
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 8.5e-95 351.3 291 58.8
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 1.9e-94 350.1 288 59.7
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 1.9e-94 350.1 294 59.5
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 3.2e-94 349.4 272 60.3
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 4.2e-94 349.0 294 58.5
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 5.5e-94 348.6 286 59.1
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 1.2e-93 347.4 291 59.5
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 1.6e-93 347.1 294 59.2
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 2.1e-93 346.7 298 58.4
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 2.1e-93 346.7 288 58.0
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 2.7e-93 346.3 274 61.7
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 3.6e-93 345.9 290 60.7
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 4.7e-93 345.5 289 59.9
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 6.1e-93 345.1 294 58.5
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 6.1e-93 345.1 284 59.5
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 6.1e-93 345.1 290 59.3
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 8.0e-93 344.7 292 58.6
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 1.8e-92 343.6 293 57.7
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 1.8e-92 343.6 293 57.7
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 1.8e-92 343.6 292 58.6
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 1.8e-92 343.6 285 59.3
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 2.3e-92 343.2 287 59.2
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 3.0e-92 342.8 293 57.7
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 4.0e-92 342.4 293 57.3
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 5.2e-92 342.0 293 57.3
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 5.2e-92 342.0 288 58.7
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 6.7e-92 341.7 293 57.7
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 6.7e-92 341.7 293 57.7
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 8.8e-92 341.3 285 59.3
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 1.1e-91 340.9 271 62.0
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 1.1e-91 340.9 293 55.6
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 1.5e-91 340.5 284 58.8
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 1.5e-91 340.5 293 58.7
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 2.6e-91 339.7 299 57.9
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 2.6e-91 339.7 288 58.7
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 4.4e-91 339.0 285 59.3
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 5.7e-91 338.6 293 56.3
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 5.7e-91 338.6 293 56.3
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 5.7e-91 338.6 290 59.3
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 9.7e-91 337.8 292 57.5
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.3e-90 337.4 285 59.6
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 3.7e-90 335.9 277 59.2
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 4.8e-90 335.5 287 55.7
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 8.2e-90 334.7 293 54.9
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 1.1e-89 334.3 290 56.2
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 1.1e-89 334.3 290 56.2
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 1.1e-89 334.3 290 56.2
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.4e-89 334.0 279 58.4
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 1.8e-89 333.6 288 58.7
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 3.1e-89 332.8 271 59.4
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 5.3e-89 332.0 293 57.0
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 5.3e-89 332.0 293 57.7
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 1.2e-88 330.9 290 56.2
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 2.0e-88 330.1 285 57.2
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 2.7e-88 329.7 290 56.6
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 4.5e-88 328.9 273 58.6
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 1.0e-87 327.8 288 56.9
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 5.0e-87 325.5 290 55.9
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 6.5e-87 325.1 314 54.1
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 1.5e-86 323.9 288 56.9
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 4.2e-86 322.4 301 54.5
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 6.1e-85 318.5 269 58.7
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 4.0e-84 315.8 262 59.9
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 3.7e-82 309.3 269 57.2
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 2.7e-80 303.1 259 60.2
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 7.7e-80 301.6 286 53.1
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 2.9e-79 299.7 256 57.0
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 1.5e-78 297.4 260 56.5
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 1.9e-78 297.0 246 58.5
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 9.4e-78 294.7 300 51.7
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.8e-76 290.4 233 60.9
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 3.0e-76 289.7 247 59.1
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 2.2e-74 283.5 232 61.6
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 2.9e-71 273.1 229 58.1
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 3.8e-71 272.7 286 51.7
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 1.4e-68 264.2 294 45.9
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 9.8e-67 258.1 227 59.0
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 2.9e-66 256.5 404 39.1
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 1.0e-63 248.1 300 44.0
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 1.3e-63 247.7 299 44.8
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 3.5e-56 223.0 197 56.9
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 1.8e-52 210.7 307 43.3
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 6.8e-52 208.8 281 41.6
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.3e-50 204.5 177 57.1
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 5.4e-49 199.1 289 40.1
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 6.2e-45 185.7 167 56.3
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 1.1e-44 184.9 156 56.4
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.8e-44 184.1 291 38.5
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 3.1e-44 183.3 265 39.6
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 4.0e-44 183.0 93 89.2
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 5.2e-44 182.6 248 40.7
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 7.6e-43 178.7 123 71.5
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 1.3e-39 167.9 181 47.5
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 6.6e-39 165.6 368 32.1
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 4.3e-38 162.9 287 35.2
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 9.6e-38 161.8 137 56.9
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 2.8e-37 160.2 256 37.9
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 6.2e-37 159.1 309 32.4
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 6.6e-31 139.0 280 32.9
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.9e-30 137.5 106 59.4
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 7.3e-30 135.6 102 66.7
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 6.9e-28 129.0 113 54.0
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 1.0e-23 115.2 313 28.1
MCO16G342 Micromonas commoda HOM05D005585 ORTHO05D006905 9.3e-17 92.0 244 28.3
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 7.9e-16 89.0 190 33.2
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 6.0e-08 62.8 99 40.4


User provided reference genes

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