Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0198900 Oryza sativa ssp. japonica HOM05D007089 ORTHO05D008959 1.7e-246 855.5 428 100.0
Zm00001eb007930 Zea mays HOM05D007089 ORTHO05D008959 3.6e-151 538.9 420 66.2
HPP92_020401 Vanilla planifolia HOM05D007089 ORTHO05D008959 5.2e-118 428.7 422 50.5
Nn1g05102 Nelumbo nucifera HOM05D007089 ORTHO05D008959 1.7e-113 413.7 421 52.7
COL.COLO4_26368 Corchorus olitorius HOM05D007089 ORTHO05D008959 3.9e-113 412.5 420 48.1
Gorai.010G011900 Gossypium raimondii HOM05D007089 ORTHO05D008959 1.5e-112 410.6 418 48.3
Hma1.2p1_0203F.1_g086680 Hydrangea macrophylla HOM05D007089 ORTHO05D008959 1.9e-112 410.2 427 49.4
Gohir.D06G009100 Gossypium hirsutum HOM05D007089 ORTHO05D008959 2.1e-111 406.8 418 48.1
Atru.chr13.537 Acer truncatum HOM05D007089 ORTHO05D008959 6.2e-111 405.2 413 50.8
Gohir.A06G011700 Gossypium hirsutum HOM05D007089 ORTHO05D008959 1.1e-110 404.4 418 48.3
Cfa018438 Carpinus fangiana HOM05D007089 ORTHO05D008959 1.8e-110 403.7 432 48.1
Aqoxy5G01701 Aquilegia oxysepala HOM05D007089 ORTHO05D008959 5.2e-110 402.1 426 49.1
Ciclev10001360m.g Citrus clementina HOM05D007089 ORTHO05D008959 2.0e-109 400.2 411 49.9
CAN.G1126.18 Capsicum annuum HOM05D007089 ORTHO05D008959 3.4e-109 399.4 428 50.5
ATR0733G253 Amborella trichopoda HOM05D007089 ORTHO05D008959 4.4e-109 399.1 430 47.9
PSO700G0257 Papaver somniferum HOM05D007089 ORTHO05D008959 4.4e-109 399.1 437 48.7
Nitab4.5_0005314g0050 Nicotiana tabacum HOM05D007089 ORTHO05D008959 7.5e-109 398.3 428 48.8
Lj4A43T59 Lonicera japonica HOM05D007089 ORTHO05D008959 1.3e-108 397.5 435 48.7
A06p15500 Brassica napus HOM05D007089 ORTHO05D008959 1.7e-108 397.1 416 46.9
BraA06t24662Z Brassica rapa HOM05D007089 ORTHO05D008959 4.9e-108 395.6 416 46.9
Sc02g0006440 Simmondsia chinensis HOM05D007089 ORTHO05D008959 8.3e-108 394.8 429 51.0
PGSC0003DMG400027847 Solanum tuberosum HOM05D007089 ORTHO05D008959 1.4e-107 394.0 414 49.5
CiPaw.09G208600 Carya illinoinensis HOM05D007089 ORTHO05D008959 2.4e-107 393.3 425 49.9
Eucgr.F01540 Eucalyptus grandis HOM05D007089 ORTHO05D008959 2.4e-107 393.3 426 48.1
GSVIVG01009652001 Vitis vinifera HOM05D007089 ORTHO05D008959 2.4e-107 393.3 432 47.9
ClCG08G015310 Citrullus lanatus HOM05D007089 ORTHO05D008959 3.2e-107 392.9 419 48.9
Manes.05G163100 Manihot esculenta HOM05D007089 ORTHO05D008959 3.2e-107 392.9 423 48.5
C05p17740 Brassica napus HOM05D007089 ORTHO05D008959 5.4e-107 392.1 418 45.9
CANSAT25G1057 Cannabis sativa HOM05D007089 ORTHO05D008959 5.4e-107 392.1 424 47.6
HanXRQChr14g0437051 Helianthus annuus HOM05D007089 ORTHO05D008959 5.4e-107 392.1 423 49.2
AL1G31930 Arabidopsis lyrata HOM05D007089 ORTHO05D008959 7.1e-107 391.7 417 46.8
PSO832G2704 Papaver somniferum HOM05D007089 ORTHO05D008959 9.2e-107 391.3 440 48.0
PSO170G0803 Papaver somniferum HOM05D007089 ORTHO05D008959 1.6e-106 390.6 426 48.8
Potri.014G041400 Populus trichocarpa HOM05D007089 ORTHO05D008959 1.6e-106 390.6 420 47.9
Prupe.1G383100 Prunus persica HOM05D007089 ORTHO05D008959 1.6e-106 390.6 419 47.7
BolC5t30479H Brassica oleracea HOM05D007089 ORTHO05D008959 2.7e-106 389.8 420 46.0
MSTRG.22295 Avicennia marina HOM05D007089 ORTHO05D008959 7.8e-106 388.3 429 47.8
Sp1g17250 Schrenkiella parvula HOM05D007089 ORTHO05D008959 1.0e-105 387.9 419 45.8
CSS0000683 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 1.3e-105 387.5 430 48.1
Migut.N00515 Erythranthe guttata HOM05D007089 ORTHO05D008959 1.7e-105 387.1 430 46.7
Sopen04g033530 Solanum pennellii HOM05D007089 ORTHO05D008959 2.3e-105 386.7 422 48.3
Aa31LG7G4040 Aethionema arabicum HOM05D007089 ORTHO05D008959 3.3e-104 382.9 414 49.5
AT1G19340 Arabidopsis thaliana HOM05D007089 ORTHO05D008959 5.6e-104 382.1 422 46.4
PGR083G0581 Punica granatum HOM05D007089 ORTHO05D008959 5.6e-104 382.1 419 49.2
TAR381G0661 Trochodendron aralioides HOM05D007089 ORTHO05D008959 7.3e-104 381.7 440 47.5
SGA_v2.0_scaffold33G13513 Striga asiatica HOM05D007089 ORTHO05D008959 3.6e-103 379.4 442 47.7
TPR.G15730 Trifolium pratense HOM05D007089 ORTHO05D008959 6.2e-103 378.6 426 47.4
Glyma.14G077000 Glycine max HOM05D007089 ORTHO05D008959 8.1e-103 378.3 430 46.3
THA.LOC104809053 Tarenaya hassleriana HOM05D007089 ORTHO05D008959 8.1e-103 378.3 418 49.3
Oeu015592.2 Olea europaea HOM05D007089 ORTHO05D008959 1.1e-102 377.9 443 47.0
Ah.08g217460 Amaranthus hybridus HOM05D007089 ORTHO05D008959 2.4e-102 376.7 442 44.1
Thhalv10007768m.g Eutrema salsugineum HOM05D007089 ORTHO05D008959 2.6e-101 373.2 417 47.2
MD04G1062700 Malus domestica HOM05D007089 ORTHO05D008959 9.9e-101 371.3 420 47.9
FAN15G3100 Fragaria x ananassa HOM05D007089 ORTHO05D008959 1.7e-100 370.5 426 48.1
arahy.Tifrunner.gnm1.ann1.4B2PQ4 Arachis hypogaea HOM05D007089 ORTHO05D008959 2.9e-100 369.8 430 47.9
FvH4_2g40230 Fragaria vesca HOM05D007089 ORTHO05D008959 3.8e-100 369.4 418 47.8
Cc10_g03320 Coffea canephora HOM05D007089 ORTHO05D008959 1.1e-99 367.9 424 47.4
Lalb_Chr14g0369091 Lupinus albus HOM05D007089 ORTHO05D008959 1.1e-99 367.9 428 47.2
Medtr1g021985 Medicago truncatula HOM05D007089 ORTHO05D008959 1.1e-99 367.9 425 46.1
Carub.0001s1893 Capsella rubella HOM05D007089 ORTHO05D008959 1.4e-99 367.5 424 44.1
BcaB07g31960 Brassica carinata HOM05D007089 ORTHO05D008959 3.2e-99 366.3 420 45.5
AUR62025603 Chenopodium quinoa HOM05D007089 ORTHO05D008959 4.2e-99 365.9 462 43.5
Psat6g006920 Pisum sativum HOM05D007089 ORTHO05D008959 5.4e-99 365.5 429 47.6
SalBow8G1187 Salvia bowleyana HOM05D007089 ORTHO05D008959 7.1e-99 365.2 449 45.2
SalBow8G1554 Salvia bowleyana HOM05D007089 ORTHO05D008959 7.1e-99 365.2 449 45.2
Peaxi162Scf00057g00723 Petunia axillaris HOM05D007089 ORTHO05D008959 1.2e-98 364.4 425 47.8
Cpa.g.sc64.54 Carica papaya HOM05D007089 ORTHO05D008959 2.1e-98 363.6 327 54.4
Ca_13340_v3 Cicer arietinum L. HOM05D007089 ORTHO05D008959 3.5e-98 362.8 439 45.3
Solyc04g079950.4 Solanum lycopersicum HOM05D007089 ORTHO05D008959 1.3e-97 360.9 404 48.3
Duzib041G0709 Durio zibethinus HOM05D007089 ORTHO05D008959 3.9e-97 359.4 418 44.7
VMungo0647G2017 Vigna mungo HOM05D007089 ORTHO05D008959 3.9e-97 359.4 435 46.9
RcHm_v2.0_Chr6g0300531 Rosa chinensis HOM05D007089 ORTHO05D008959 2.5e-96 356.7 418 46.4
Haze_17627 Corylus avellana HOM05D007089 ORTHO05D008959 5.6e-96 355.5 428 44.6
Rhsim07G0236000 Rhododendron simsii HOM05D007089 ORTHO05D008959 1.6e-95 354.0 471 44.2
unitig_8.g3115 Utricularia gibba HOM05D007089 ORTHO05D008959 1.5e-93 347.4 402 46.5
CARHR019930 Cardamine hirsuta HOM05D007089 ORTHO05D008959 4.9e-92 342.4 330 50.6
arahy.Tifrunner.gnm1.ann1.K9WZZ6 Arachis hypogaea HOM05D007089 ORTHO05D008959 5.4e-91 339.0 430 45.8
vmacro04507 Vaccinium macrocarpon HOM05D007089 ORTHO05D008959 1.2e-90 337.8 437 44.9
MBI16_g26378_MAGBIO Magnolia biondii HOM05D007089 ORTHO05D008959 2.1e-90 337.0 445 44.0
QL02p007525 Quercus lobata HOM05D007089 ORTHO05D008959 2.1e-90 337.0 544 38.2
Mapoly0005s0290 Marchantia polymorpha HOM05D007089 ORTHO05D008959 2.3e-89 333.6 437 42.8
Sabra14G0030300 Salix brachista HOM05D007089 ORTHO05D008959 6.6e-89 332.0 369 46.3
EL10Ac7g18245 Beta vulgaris HOM05D007089 ORTHO05D008959 1.5e-85 320.9 444 40.8
DCAR_008774 Daucus carota HOM05D007089 ORTHO05D008959 2.6e-85 320.1 380 45.3
Nitab4.5_0000110g0230 Nicotiana tabacum HOM05D007089 ORTHO05D008959 4.9e-84 315.8 380 45.8
AUR62001387 Chenopodium quinoa HOM05D007089 ORTHO05D008959 2.4e-83 313.5 450 41.8
CsaV3_2G028500 Cucumis sativus L. HOM05D007089 ORTHO05D008959 1.3e-79 301.2 337 47.8
SEGI_17198 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 1.3e-79 301.2 425 42.4
Phvul.001G016200 Phaseolus vulgaris HOM05D007089 ORTHO05D008959 6.2e-79 298.9 393 43.5
Pp3c10_21330 Physcomitrium patens HOM05D007089 ORTHO05D008959 1.7e-76 290.8 284 51.1
CDE02G1565 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 1.9e-75 287.3 397 42.3
ECA246G5250 Erigeron canadensis HOM05D007089 ORTHO05D008959 5.5e-75 285.8 354 44.6
Lsat_1_v5_gn_5_30021 Lactuca sativa HOM05D007089 ORTHO05D008959 1.6e-74 284.3 371 43.7
SEGI_08195 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 1.1e-70 271.6 350 44.6
Lj5g0009638 Lotus japonicus HOM05D007089 ORTHO05D008959 7.6e-69 265.4 351 45.3
SMO358G0064 Selaginella moellendorffii HOM05D007089 ORTHO05D008959 2.0e-56 224.2 193 54.9
FAN20G0063 Fragaria x ananassa HOM05D007089 ORTHO05D008959 4.8e-55 219.5 339 40.1
Actinidia29839 Actinidia chinensis HOM05D007089 ORTHO05D008959 2.2e-52 210.7 356 38.5
BcaNung07258 Brassica carinata HOM05D000817 ORTHO05D008959 1.4e-49 201.4 155 54.2
Actinidia38023 Actinidia chinensis HOM05D007089 ORTHO05D008959 6.7e-49 199.1 289 39.8
CBR_g34449 Chara braunii HOM05D007089 ORTHO05D008959 2.2e-47 194.1 393 30.8
AagrBONN_evm.TU.Sc2ySwM_228.1009 Anthoceros agrestis HOM05D007089 ORTHO05D008959 2.2e-39 167.5 221 42.1
Thecc.01G286100 Theobroma cacao HOM05D007089 ORTHO05D008959 4.7e-34 149.8 228 42.1
MELO3C010924.2 Cucumis melo HOM05D007089 ORTHO05D008959 2.8e-31 140.6 227 40.1
FAN27G0845 Fragaria x ananassa HOM05D007089 ORTHO05D008959 2.3e-17 94.4 166 39.8
Glyma.17G248801 Glycine max HOM05D007089 ORTHO05D008959 7.5e-16 89.4 87 44.8
Sed0025576 Sechium edule HOM05D007089 ORTHO05D008959 9.2e-14 82.4 83 48.2
CSS0043770 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 2.3e-12 77.8 166 32.5
Cfa025491 Carpinus fangiana HOM05D007089 ORTHO05D008959 3.9e-12 77.0 202 27.7
Thecc.08G022600 Theobroma cacao HOM05D007089 ORTHO05D008959 1.8e-09 68.2 173 32.9
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 1.9e-06 58.2 100 47.0
CDE01G0194 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 9.2e-06 55.8 44 59.1


User provided reference genes

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