Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0189300 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 2.8e-237 825.1 478 100.0
Zm00001eb006740 Zea mays HOM05D004950 ORTHO05D004838 1.9e-153 546.6 443 70.2
Zm00001eb401420 Zea mays HOM05D004950 ORTHO05D004838 6.2e-152 541.6 445 69.4
Zm00001eb423860 Zea mays HOM05D020839 ORTHO05D004838 4.0e-42 176.8 460 36.5
Os04g0450900 Oryza sativa ssp. japonica HOM05D020839 ORTHO05D004838 1.9e-39 167.9 336 41.1
Zm00001eb081260 Zea mays HOM05D020839 ORTHO05D004838 1.2e-38 165.2 328 36.9
Zm00001eb199080 Zea mays HOM05D004950 ORTHO05D004838 6.2e-35 152.9 299 40.1
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 3.5e-30 137.1 330 33.3
Os08g0481100 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 1.9e-28 131.3 369 33.1
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 5.6e-28 129.8 317 33.1
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 8.9e-26 122.5 395 31.4
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 3.4e-25 120.6 344 31.7
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 3.8e-24 117.1 374 29.1
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 1.2e-22 112.1 430 27.9
HPP92_002322 Vanilla planifolia HOM05D004950 ORTHO05D004838 1.2e-22 112.1 330 33.6
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 1.6e-22 111.7 343 30.3
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 4.6e-22 110.2 330 30.6
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 8.6e-21 105.9 299 29.4
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 8.6e-21 105.9 299 29.4
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 8.6e-21 105.9 299 29.4
Sabra07G0079900 Salix brachista HOM05D004950 ORTHO05D004838 1.5e-20 105.1 371 29.4
Lj2C540T9 Lonicera japonica HOM05D004950 ORTHO05D004838 2.5e-20 104.4 260 32.3
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 5.6e-20 103.2 313 30.0
Actinidia28833 Actinidia chinensis HOM05D000288 ORTHO05D004838 9.6e-20 102.4 392 27.3
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 9.6e-20 102.4 404 28.0
TAR376G0363 Trochodendron aralioides HOM05D004950 ORTHO05D004838 9.6e-20 102.4 262 31.7
HanXRQChr14g0445061 Helianthus annuus HOM05D004950 ORTHO05D004838 2.8e-19 100.9 267 30.0
MD11G1200900 Malus domestica HOM05D004950 ORTHO05D004838 2.8e-19 100.9 353 28.3
Oeu033042.1 Olea europaea HOM05D004950 ORTHO05D004838 3.6e-19 100.5 381 30.2
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 4.7e-19 100.1 362 27.3
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 1.8e-18 98.2 281 29.5
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 1.8e-18 98.2 260 33.1
Sp7g35850 Schrenkiella parvula HOM05D004950 ORTHO05D004838 1.8e-18 98.2 363 29.2
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 5.2e-18 96.7 510 25.1
unitig_32.g10703 Utricularia gibba HOM05D004950 ORTHO05D004838 5.2e-18 96.7 290 30.0
CiPaw.04G103200 Carya illinoinensis HOM05D004950 ORTHO05D004838 8.9e-18 95.9 494 26.1
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 2.6e-17 94.4 339 28.3
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 9.9e-17 92.4 362 27.3
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 9.9e-17 92.4 295 28.8
Sed0023595 Sechium edule HOM05D004950 ORTHO05D004838 2.2e-16 91.3 350 27.4
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 3.8e-16 90.5 332 28.6
EL10As13g24047 Beta vulgaris HOM05D004950 ORTHO05D004838 8.4e-16 89.4 239 31.0
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 8.4e-16 89.4 348 26.7
Ca_16511_v3 Cicer arietinum L. HOM05D004950 ORTHO05D004838 1.9e-15 88.2 285 30.5
Glyma.18G015400 Glycine max HOM05D004950 ORTHO05D004838 1.9e-15 88.2 274 31.4
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 5.4e-15 86.7 348 26.7
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 5.4e-15 86.7 267 31.8
Lsat_1_v5_gn_2_66121 Lactuca sativa HOM05D004950 ORTHO05D004838 7.1e-15 86.3 284 28.5
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 7.1e-15 86.3 327 27.2
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 7.1e-15 86.3 340 27.4
Zm00001eb182800 Zea mays HOM05D020839 ORTHO05D004838 7.1e-15 86.3 285 32.3
Eucgr.H04743 Eucalyptus grandis HOM05D004950 ORTHO05D004838 1.6e-14 85.1 417 26.9
ECA238G0370 Erigeron canadensis HOM05D004950 ORTHO05D004838 2.1e-14 84.7 328 27.4
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 2.1e-14 84.7 406 25.6
DCAR_016618 Daucus carota HOM05D004950 ORTHO05D004838 3.5e-14 84.0 394 26.4
AL7G12330 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 7.8e-14 82.8 170 34.7
MBI02_g33232_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004838 7.8e-14 82.8 154 43.5
Os02g0572600 Oryza sativa ssp. japonica HOM05D020839 ORTHO05D004838 7.8e-14 82.8 289 29.1
PGSC0003DMG400016153 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.3e-13 82.0 462 24.9
FvH4_1g20290 Fragaria vesca HOM05D004950 ORTHO05D004838 2.3e-13 81.3 348 26.1
Gohir.D11G054550 Gossypium hirsutum HOM05D004950 ORTHO05D004838 3.9e-13 80.5 380 27.9
HPP92_016777 Vanilla planifolia HOM05D004950 ORTHO05D004838 3.9e-13 80.5 147 40.1
AT4G40020 Arabidopsis thaliana HOM05D004950 ORTHO05D004838 1.5e-12 78.6 172 34.9
PSO302G0004 Papaver somniferum HOM05D004950 ORTHO05D004838 1.5e-12 78.6 222 29.3
THA.LOC104807862 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 1.5e-12 78.6 329 28.9
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 1.9e-12 78.2 365 27.7
Peaxi162Scf00383g01014 Petunia axillaris HOM05D004950 ORTHO05D004838 1.9e-12 78.2 248 29.0
HPP92_027242 Vanilla planifolia HOM05D004950 ORTHO05D004838 3.3e-12 77.4 86 50.0
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 7.3e-12 76.3 260 26.9
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 9.6e-12 75.9 376 25.5
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 1.3e-11 75.5 309 30.4
Prupe.6G192500 Prunus persica HOM05D004950 ORTHO05D004838 1.6e-11 75.1 326 25.8
TWI53G1075 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 1.6e-11 75.1 138 42.8
Sopen11g004990 Solanum pennellii HOM05D004950 ORTHO05D004838 4.8e-11 73.6 262 26.7
MSTRG.3758 Avicennia marina HOM05D004950 ORTHO05D004838 6.2e-11 73.2 134 35.8
CARHR246650 Cardamine hirsuta HOM05D004950 ORTHO05D004838 8.1e-11 72.8 338 27.2
CiPaw.03G145300 Carya illinoinensis HOM05D004950 ORTHO05D004838 8.1e-11 72.8 238 26.9
Solyc07g009520.2 Solanum lycopersicum HOM05D004950 ORTHO05D004838 8.1e-11 72.8 281 26.7
CAN.G905.19 Capsicum annuum HOM05D004950 ORTHO05D004838 1.8e-10 71.6 393 26.2
Lalb_Chr11g0075431 Lupinus albus HOM05D004950 ORTHO05D004838 2.4e-10 71.2 250 26.4
CsaV3_UNG223520 Cucumis sativus L. HOM05D004950 ORTHO05D004838 3.1e-10 70.9 188 32.4
Aqoxy6G00721 Aquilegia oxysepala HOM05D004950 ORTHO05D004838 4.0e-10 70.5 324 27.8
Thhalv10027577m.g Eutrema salsugineum HOM05D004950 ORTHO05D004838 4.0e-10 70.5 124 37.9
Sabra05G0059200 Salix brachista HOM05D004950 ORTHO05D004838 5.3e-10 70.1 331 28.1
Solyc11g010210.1 Solanum lycopersicum HOM05D004950 ORTHO05D004838 5.3e-10 70.1 259 26.3
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 6.9e-10 69.7 208 28.8
THA.LOC104824888 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 9.0e-10 69.3 307 26.4
HanXRQChr10g0314761 Helianthus annuus HOM05D004950 ORTHO05D004838 1.2e-09 68.9 300 25.0
PSO675G9110 Papaver somniferum HOM05D004950 ORTHO05D004838 1.2e-09 68.9 129 35.7
C01p01070 Brassica napus HOM05D004950 ORTHO05D004838 1.5e-09 68.6 348 27.0
Zm00001eb024910 Zea mays HOM05D002657 ORTHO05D003059 2.6e-09 67.8 397 25.7
BolC1t00104H Brassica oleracea HOM05D004950 ORTHO05D004838 3.4e-09 67.4 351 26.8
Nitab4.5_0001874g0100 Nicotiana tabacum HOM05D004950 ORTHO05D004838 3.4e-09 67.4 326 26.4
BcaNung00933 Brassica carinata HOM05D004950 ORTHO05D004838 5.8e-09 66.6 128 35.9
Gohir.A11G051150 Gossypium hirsutum HOM05D004950 ORTHO05D004838 5.8e-09 66.6 378 25.9
Zm00001eb244690 Zea mays HOM05D020839 ORTHO05D004838 5.8e-09 66.6 283 25.8
BraA01t00092Z Brassica rapa HOM05D004950 ORTHO05D004838 1.3e-08 65.5 350 26.9
Gorai.007G059800 Gossypium raimondii HOM05D004950 ORTHO05D004838 1.3e-08 65.5 335 24.8
A01p00940 Brassica napus HOM05D004950 ORTHO05D004838 2.2e-08 64.7 350 26.6
Glyma.11G241600 Glycine max HOM05D004950 ORTHO05D004838 2.2e-08 64.7 361 25.2
BcaB02g10025 Brassica carinata HOM05D004950 ORTHO05D032427 4.9e-08 63.5 212 31.1
PSO541G5545 Papaver somniferum HOM05D004950 ORTHO05D004838 4.9e-08 63.5 219 26.9
SGA_v2.0_scaffold115G32166 Striga asiatica HOM05D004950 ORTHO05D004838 1.9e-07 61.6 260 26.5
CSS0021212 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 2.4e-07 61.2 253 31.6
VMungo1383G3674 Vigna mungo HOM05D004950 ORTHO05D004838 2.4e-07 61.2 121 34.7
Ah.03g142010 Amaranthus hybridus HOM05D004950 ORTHO05D004838 3.2e-07 60.8 172 28.5
HanXRQChr14g0445051 Helianthus annuus HOM05D004950 ORTHO05D004838 3.2e-07 60.8 117 35.0
Carub.0007s0199 Capsella rubella HOM05D004950 ORTHO05D004838 5.4e-07 60.1 335 25.4
Cc07_g14660 Coffea canephora HOM05D004950 ORTHO05D004838 5.4e-07 60.1 268 29.9
Nn1g05150 Nelumbo nucifera HOM05D002657 ORTHO05D003059 7.1e-07 59.7 419 24.8
Nitab4.5_0000128g0260 Nicotiana tabacum HOM05D000288 ORTHO05D004838 7.1e-07 59.7 225 28.9
Phvul.001G253600 Phaseolus vulgaris HOM05D004950 ORTHO05D004838 9.3e-07 59.3 218 27.5
Duzib264G0159 Durio zibethinus HOM05D004950 ORTHO05D004838 1.2e-06 58.9 291 24.1
CDE10G1056 Ceratophyllum demersum HOM05D002657 ORTHO05D004838 2.1e-06 58.2 122 36.9
Gorai.007G348400 Gossypium raimondii HOM05D002657 ORTHO05D003059 2.1e-06 58.2 402 21.9
Nn1g05445 Nelumbo nucifera HOM05D004950 ORTHO05D004838 2.1e-06 58.2 342 23.7
ATR0684G198 Amborella trichopoda HOM05D002657 ORTHO05D003059 2.7e-06 57.8 117 30.8
C04p34940 Brassica napus HOM05D004950 ORTHO05D004838 2.7e-06 57.8 191 28.3
BolC4t25048H Brassica oleracea HOM05D004950 ORTHO05D004838 2.7e-06 57.8 191 28.3
GSVIVG01003422001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.5e-06 57.4 267 27.3
ClCG07G017420 Citrullus lanatus HOM05D004950 ORTHO05D004838 4.6e-06 57.0 278 24.8
MBI05_g36223_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D003059 4.6e-06 57.0 207 32.4
Nitab4.5_0010702g0020 Nicotiana tabacum HOM05D000288 ORTHO05D000173 4.6e-06 57.0 223 26.5
A09p21730 Brassica napus HOM05D004950 ORTHO05D004838 7.9e-06 56.2 344 23.3
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 7.9e-06 56.2 294 24.1


User provided reference genes

Program Settings