Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 6.5e-279 963.4 474 100.0
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.9e-246 855.5 468 88.9
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 4.8e-197 691.4 469 70.4
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.9e-193 679.5 470 70.6
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.3e-193 677.2 470 70.4
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 2.1e-192 676.0 470 69.4
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 7.9e-192 674.1 469 68.7
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.3e-191 672.5 470 70.0
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 8.7e-191 670.6 473 68.1
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.5e-190 669.8 470 70.4
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.9e-190 669.5 471 69.9
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 5.7e-190 667.9 472 68.2
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 9.6e-190 667.2 472 68.0
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 1.3e-189 666.8 470 68.1
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.3e-189 666.8 471 68.4
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 1.6e-189 666.4 465 69.7
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 8.2e-189 664.1 469 69.7
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.8e-188 662.9 473 68.5
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.2e-187 660.2 469 69.1
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.5e-187 659.8 470 68.5
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 2.0e-187 659.4 470 69.1
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 3.4e-187 658.7 470 68.9
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 5.9e-187 657.9 470 68.1
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 3.8e-186 655.2 466 69.5
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 6.5e-186 654.4 494 65.0
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 6.5e-186 654.4 473 67.9
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.1e-185 653.7 470 69.4
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.9e-185 652.9 467 68.3
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 5.5e-185 651.4 470 67.9
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 1.2e-184 650.2 472 68.0
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 1.6e-184 649.8 466 66.7
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.3e-183 646.7 471 67.7
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.8e-183 646.4 475 66.7
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 3.9e-183 645.2 470 67.4
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.1e-183 644.8 467 68.1
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 8.7e-183 644.0 467 68.1
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 1.1e-182 643.7 468 68.8
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 1.1e-182 643.7 469 67.8
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 1.9e-182 642.9 475 66.5
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.3e-182 642.1 459 70.8
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 4.3e-182 641.7 466 67.4
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 5.7e-182 641.3 475 66.7
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 7.4e-182 641.0 469 67.4
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 9.7e-182 640.6 470 67.0
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 2.2e-181 639.4 473 67.7
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.7e-181 638.6 471 66.5
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.8e-181 638.3 469 66.5
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 4.8e-181 638.3 472 67.4
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 1.4e-180 636.7 471 65.4
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 3.1e-180 635.6 470 66.8
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.1e-180 635.6 471 66.5
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 6.9e-180 634.4 469 66.1
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 4.5e-179 631.7 472 65.9
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 5.9e-179 631.3 467 66.8
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.3e-178 630.2 465 65.4
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 5.0e-178 628.2 479 64.3
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 8.5e-178 627.5 466 66.5
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 2.5e-177 625.9 466 66.5
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 2.5e-177 625.9 466 66.5
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 1.2e-176 623.6 448 66.7
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 2.7e-176 622.5 469 65.2
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 2.7e-176 622.5 469 66.1
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 2.3e-175 619.4 466 66.1
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 3.9e-175 618.6 464 66.6
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 6.7e-175 617.8 465 66.0
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 8.8e-175 617.5 469 65.2
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.1e-174 617.1 452 67.7
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 1.1e-174 617.1 466 64.8
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 4.8e-173 611.7 511 59.1
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.8e-172 609.8 541 57.7
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 4.1e-172 608.6 439 66.3
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 6.9e-172 607.8 464 64.9
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 6.9e-172 607.8 466 64.2
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 1.2e-171 607.1 466 64.4
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 2.0e-171 606.3 464 65.3
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.5e-171 605.1 466 64.6
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 5.9e-171 604.7 465 64.5
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 5.9e-171 604.7 453 64.7
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 7.7e-171 604.4 464 64.7
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 2.2e-170 602.8 464 64.4
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.9e-170 602.4 464 65.1
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 3.8e-170 602.1 426 69.2
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 6.5e-170 601.3 471 64.8
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.4e-169 600.1 466 64.6
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 1.9e-169 599.7 467 64.5
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.6e-168 596.7 471 64.5
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 2.1e-168 596.3 466 63.3
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 2.1e-168 596.3 469 64.0
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 4.7e-168 595.1 467 63.4
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.4e-167 593.6 465 63.9
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 3.9e-167 592.0 464 63.6
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 5.2e-167 591.7 465 63.4
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 5.2e-167 591.7 465 63.4
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.2e-167 591.7 465 63.9
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 1.5e-166 590.1 466 64.2
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.8e-165 585.9 399 70.9
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.2e-163 580.5 465 62.6
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.6e-163 580.1 471 63.3
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 5.9e-163 578.2 475 60.6
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.9e-161 573.2 469 62.5
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 4.2e-161 572.0 429 65.5
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 7.2e-161 571.2 431 66.1
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 7.2e-161 571.2 508 57.1
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.6e-160 570.1 521 58.3
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 4.4e-158 562.0 437 63.4
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 4.8e-157 558.5 480 61.0
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 3.5e-155 552.4 401 65.3
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 9.4e-153 544.3 365 70.1
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 6.1e-152 541.6 466 58.2
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 8.8e-151 537.7 488 55.7
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.3e-149 533.9 464 59.7
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 4.2e-145 518.8 470 59.6
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 8.3e-141 504.6 463 58.5
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 8.3e-141 504.6 350 69.4
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.6e-139 500.4 360 66.1
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 2.9e-138 496.1 410 62.7
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.5e-134 483.8 545 48.1
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 3.2e-132 476.1 464 51.9
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 8.1e-120 434.9 467 51.0
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.2e-108 396.4 465 48.4
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.4e-103 380.9 327 60.9
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 5.6e-97 359.0 304 60.9
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.8e-96 356.7 250 68.4
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.8e-95 354.0 269 66.2
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.3e-93 347.8 474 43.7
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 3.1e-87 326.6 382 44.8
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.9e-85 320.1 285 60.7
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 9.0e-79 298.5 201 69.2
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 1.6e-75 287.7 203 72.4
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 2.7e-75 287.0 486 35.4
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.4e-71 274.6 516 36.0
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 9.0e-71 271.9 195 71.8
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 3.3e-65 253.4 266 53.0
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.7e-65 252.7 270 48.5
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.1e-63 246.5 250 54.8
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.6e-62 243.8 461 36.0
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 3.1e-55 220.3 272 46.3
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 5.3e-55 219.5 109 97.2
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.7e-53 214.5 135 80.0
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.6e-49 200.7 174 58.6
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.7e-48 198.0 126 76.2
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.4e-47 194.1 178 56.2
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.1e-47 193.7 301 40.2
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 4.2e-44 183.3 116 76.7
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 6.7e-42 176.0 201 48.8
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.2e-41 175.3 110 71.8
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 3.3e-41 173.7 92 89.1
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.3e-40 171.8 110 70.0
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.8e-40 169.9 110 69.1
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.1e-31 142.1 110 60.9
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 5.0e-29 133.3 110 64.5
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.8e-27 127.5 311 29.6
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 9.8e-25 119.0 67 82.1
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 1.6e-19 101.7 125 46.4
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 2.0e-17 94.7 63 71.4
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 2.7e-14 84.3 58 69.0
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 3.1e-10 70.9 74 48.6
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 9.2e-07 59.3 38 76.3
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 2.7e-06 57.8 42 69.0
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 6.0e-06 56.6 42 66.7


User provided reference genes

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