Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0180300 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 2.9e-288 994.6 514 100.0
Zm00001eb005950 Zea mays HOM05D000001 ORTHO05D004044 1.2e-217 760.0 516 74.8
Zm00001eb401800 Zea mays HOM05D000001 ORTHO05D004044 5.7e-103 379.0 308 65.3
TAR624G0865 Trochodendron aralioides HOM05D000001 ORTHO05D004044 3.8e-75 286.6 574 37.6
Ciclev10007851m.g Citrus clementina HOM05D000001 ORTHO05D004044 2.3e-72 277.3 572 38.3
MBI19_g47982_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 5.7e-71 272.7 624 35.7
Atru.chr7.1828 Acer truncatum HOM05D000001 ORTHO05D004044 3.5e-68 263.5 574 36.4
MD15G1047700 Malus domestica HOM05D000001 ORTHO05D004044 3.5e-68 263.5 566 36.0
Manes.16G087000 Manihot esculenta HOM05D000001 ORTHO05D004044 4.6e-68 263.1 577 35.0
MBI19_g09929_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 5.9e-68 262.7 614 35.3
Prupe.1G402100 Prunus persica HOM05D000001 ORTHO05D004044 1.0e-67 261.9 566 36.4
CSS0022708 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 3.9e-67 260.0 567 35.8
MD08G1046100 Malus domestica HOM05D000001 ORTHO05D004044 5.0e-67 259.6 565 35.9
Peaxi162Scf00327g00026 Petunia axillaris HOM05D000001 ORTHO05D004044 5.0e-67 259.6 563 34.8
Glyma.14G106500 Glycine max HOM05D000001 ORTHO05D004044 6.6e-67 259.2 568 35.9
PGSC0003DMG400012991 Solanum tuberosum HOM05D000001 ORTHO05D004044 7.3e-66 255.8 564 35.1
Aqoxy7G04098 Aquilegia oxysepala HOM05D000001 ORTHO05D004044 1.2e-65 255.0 582 34.7
Dinv41848 Davidia involucrata HOM05D000001 ORTHO05D004044 1.2e-65 255.0 542 36.7
FvH4_2g30791 Fragaria vesca HOM05D000001 ORTHO05D004044 1.6e-65 254.6 563 35.7
Glyma.06G057700 Glycine max HOM05D000001 ORTHO05D004044 2.8e-65 253.8 568 35.7
Glyma.17G219600 Glycine max HOM05D000001 ORTHO05D004044 2.8e-65 253.8 565 36.1
Lalb_Chr22g0349641 Lupinus albus HOM05D000001 ORTHO05D004044 3.6e-65 253.4 566 35.9
Phvul.001G044600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 3.6e-65 253.4 577 35.9
Solyc08g061320.3 Solanum lycopersicum HOM05D000001 ORTHO05D004044 3.6e-65 253.4 564 35.1
HPP92_016599 Vanilla planifolia HOM05D000001 ORTHO05D004044 4.7e-65 253.1 553 37.1
Cc08_g00980 Coffea canephora HOM05D000001 ORTHO05D004044 6.2e-65 252.7 578 35.1
Sopen08g016700 Solanum pennellii HOM05D000001 ORTHO05D004044 6.2e-65 252.7 562 34.5
Haze_18323 Corylus avellana HOM05D000001 ORTHO05D004044 1.4e-64 251.5 599 34.1
Lalb_Chr14g0375461 Lupinus albus HOM05D000001 ORTHO05D004044 1.8e-64 251.1 533 36.8
Potri.018G047700 Populus trichocarpa HOM05D000001 ORTHO05D004044 2.3e-64 250.8 582 34.5
TAR626G1342 Trochodendron aralioides HOM05D000001 ORTHO05D004044 2.3e-64 250.8 571 35.0
FAN20G1082 Fragaria x ananassa HOM05D000001 ORTHO05D004044 3.1e-64 250.4 564 35.5
Nitab4.5_0004440g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004044 3.1e-64 250.4 563 33.7
TPR.G38869 Trifolium pratense HOM05D000001 ORTHO05D004044 4.0e-64 250.0 587 34.2
CANSAT25G0247 Cannabis sativa HOM05D000001 ORTHO05D004044 5.2e-64 249.6 572 35.3
VMungo0647G0604 Vigna mungo HOM05D000001 ORTHO05D004044 1.2e-63 248.4 578 34.8
CiPaw.15G090000 Carya illinoinensis HOM05D000001 ORTHO05D004044 1.5e-63 248.1 567 35.1
CAN.G117.2 Capsicum annuum HOM05D000001 ORTHO05D004044 2.6e-63 247.3 564 34.4
Glyma.04G057200 Glycine max HOM05D000001 ORTHO05D004044 2.6e-63 247.3 569 34.6
Nitab4.5_0009247g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004044 2.6e-63 247.3 567 33.7
FAN24G2651 Fragaria x ananassa HOM05D000001 ORTHO05D004044 3.4e-63 246.9 577 34.7
GSVIVG01035490001 Vitis vinifera HOM05D000001 ORTHO05D004044 3.4e-63 246.9 546 35.3
RcHm_v2.0_Chr6g0312051 Rosa chinensis HOM05D000001 ORTHO05D004044 4.4e-63 246.5 561 35.5
arahy.Tifrunner.gnm1.ann1.1E00SW Arachis hypogaea HOM05D000001 ORTHO05D004044 5.8e-63 246.1 579 33.2
Eucgr.C00743 Eucalyptus grandis HOM05D000001 ORTHO05D004044 9.8e-63 245.4 578 34.6
Rhsim11G0001100 Rhododendron simsii HOM05D000001 ORTHO05D004044 2.9e-62 243.8 570 35.3
DCAR_004372 Daucus carota HOM05D000001 ORTHO05D004044 3.7e-62 243.4 569 33.9
Gohir.A05G037900 Gossypium hirsutum HOM05D000001 ORTHO05D004044 3.7e-62 243.4 573 34.4
COL.COLO4_21160 Corchorus olitorius HOM05D000001 ORTHO05D004044 4.9e-62 243.0 578 34.1
FAN27G1566 Fragaria x ananassa HOM05D000001 ORTHO05D004044 4.9e-62 243.0 552 35.5
Gorai.009G039900 Gossypium raimondii HOM05D000001 ORTHO05D004044 6.4e-62 242.7 582 33.8
TWI32G1352 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 6.4e-62 242.7 574 34.7
Lj5g0004443 Lotus japonicus HOM05D000001 ORTHO05D004044 8.3e-62 242.3 570 35.1
TWI34G0443 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 1.4e-61 241.5 571 35.0
Oeu003966.1 Olea europaea HOM05D000001 ORTHO05D004044 3.2e-61 240.4 563 35.0
TWI63G1385 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 3.2e-61 240.4 558 34.9
FAN15G1549 Fragaria x ananassa HOM05D000001 ORTHO05D004044 4.1e-61 240.0 584 34.1
Gohir.D05G039400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 7.0e-61 239.2 582 33.7
PSO135G0765 Papaver somniferum HOM05D000001 ORTHO05D004044 7.0e-61 239.2 557 35.5
PSO724G0994 Papaver somniferum HOM05D000001 ORTHO05D004044 9.2e-61 238.8 561 35.3
Actinidia29292 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.2e-60 238.4 572 35.1
Hma1.2p1_0664F.1_g198920 Hydrangea macrophylla HOM05D000001 ORTHO05D004044 1.6e-60 238.0 576 34.4
CiPaw.16G067100 Carya illinoinensis HOM05D000001 ORTHO05D004044 2.7e-60 237.3 561 33.3
VMungo1309G1461 Vigna mungo HOM05D000001 ORTHO05D004044 3.5e-60 236.9 560 33.9
arahy.Tifrunner.gnm1.ann1.8BKD36 Arachis hypogaea HOM05D000001 ORTHO05D004044 4.6e-60 236.5 581 33.4
MELO3C016924.2 Cucumis melo HOM05D000001 ORTHO05D004044 4.6e-60 236.5 583 34.5
arahy.Tifrunner.gnm1.ann1.WRM076 Arachis hypogaea HOM05D000001 ORTHO05D004044 6.0e-60 236.1 581 33.2
CsaV3_4G036160 Cucumis sativus L. HOM05D000001 ORTHO05D004044 6.0e-60 236.1 583 34.3
Medtr1g014880 Medicago truncatula HOM05D000001 ORTHO05D004044 1.0e-59 235.3 597 33.8
Phvul.009G083600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 1.0e-59 235.3 560 34.6
Duzib168G1373 Durio zibethinus HOM05D000001 ORTHO05D004044 1.7e-59 234.6 552 35.0
ECA240G1094 Erigeron canadensis HOM05D000001 ORTHO05D004044 3.0e-59 233.8 558 33.2
HanXRQChr05g0136451 Helianthus annuus HOM05D000001 ORTHO05D004044 1.5e-58 231.5 560 34.8
HPP92_011061 Vanilla planifolia HOM05D000001 ORTHO05D004044 3.3e-58 230.3 553 33.5
CDE05G2793 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 5.6e-58 229.6 550 34.2
Sabra18G0045700 Salix brachista HOM05D000001 ORTHO05D004044 1.6e-57 228.0 604 33.3
Sed0025024 Sechium edule HOM05D000001 ORTHO05D004044 1.6e-57 228.0 586 32.8
MSTRG.25995 Avicennia marina HOM05D000001 ORTHO05D004044 2.8e-57 227.3 566 34.1
Lalb_Chr11g0063391 Lupinus albus HOM05D000001 ORTHO05D004044 6.2e-57 226.1 569 31.8
Gorai.013G221300 Gossypium raimondii HOM05D000001 ORTHO05D004044 1.1e-56 225.3 584 32.9
Sabra06G0168800 Salix brachista HOM05D000001 ORTHO05D004044 1.8e-56 224.6 598 31.9
arahy.Tifrunner.gnm1.ann1.EC7DMA Arachis hypogaea HOM05D000001 ORTHO05D004044 2.3e-56 224.2 619 31.0
Gohir.D13G195200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 4.0e-56 223.4 584 32.7
Thecc.09G065500 Theobroma cacao HOM05D000001 ORTHO05D004044 4.0e-56 223.4 561 34.0
Sp4g06560 Schrenkiella parvula HOM05D000001 ORTHO05D004044 5.2e-56 223.0 572 34.1
ECA236G1474 Erigeron canadensis HOM05D000001 ORTHO05D004044 6.8e-56 222.6 571 34.3
Gohir.A13G188300 Gossypium hirsutum HOM05D000001 ORTHO05D004044 6.8e-56 222.6 584 32.9
Manes.03G056801 Manihot esculenta HOM05D000001 ORTHO05D004044 6.8e-56 222.6 582 33.5
Migut.E01787 Erythranthe guttata HOM05D000001 ORTHO05D004044 2.0e-55 221.1 548 33.2
HanXRQChr03g0067161 Helianthus annuus HOM05D000001 ORTHO05D004044 2.0e-55 221.1 561 33.2
PGR142G0487 Punica granatum HOM05D000001 ORTHO05D004044 5.8e-55 219.5 570 32.6
DCAR_003727 Daucus carota HOM05D000001 ORTHO05D004044 1.7e-54 218.0 570 33.7
SalBow1G0904 Salvia bowleyana HOM05D000001 ORTHO05D004044 1.7e-54 218.0 597 32.3
AL4G18860 Arabidopsis lyrata HOM05D000001 ORTHO05D004044 4.9e-54 216.5 573 33.5
Carub.0004s0615 Capsella rubella HOM05D000001 ORTHO05D004044 8.3e-54 215.7 570 33.3
unitig_32.g10913 Utricularia gibba HOM05D000001 ORTHO05D004044 8.3e-54 215.7 556 33.5
Aa31LG5G9520 Aethionema arabicum HOM05D000001 ORTHO05D004044 1.1e-53 215.3 568 33.1
Lalb_Chr24g0393701 Lupinus albus HOM05D000001 ORTHO05D004044 1.9e-53 214.5 567 34.6
THA.LOC104819898 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 2.4e-53 214.2 588 32.0
Duzib187G1939 Durio zibethinus HOM05D000001 ORTHO05D004044 2.1e-52 211.1 571 33.5
Os06g0199200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 2.1e-52 211.1 549 33.9
AT2G26280 Arabidopsis thaliana HOM05D000001 ORTHO05D004044 2.7e-52 210.7 569 32.5
Nn8g38610 Nelumbo nucifera HOM05D000001 ORTHO05D004044 4.6e-52 209.9 564 33.5
AUR62037726 Chenopodium quinoa HOM05D000001 ORTHO05D004044 7.8e-52 209.1 605 31.7
SGA_v2.0_scaffold163G37994 Striga asiatica HOM05D000001 ORTHO05D004044 1.0e-51 208.8 549 33.9
Actinidia16899 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.3e-51 208.4 581 32.9
Lj1g0000975 Lotus japonicus HOM05D000001 ORTHO05D004044 1.7e-51 208.0 559 30.9
Thhalv10001942m.g Eutrema salsugineum HOM05D000001 ORTHO05D004044 6.6e-51 206.1 574 33.1
AUR62020279 Chenopodium quinoa HOM05D000001 ORTHO05D004044 1.1e-50 205.3 616 30.0
Lsat_1_v5_gn_8_70460 Lactuca sativa HOM05D000001 ORTHO05D004044 1.5e-50 204.9 565 32.7
SGA_v2.0_scaffold169G38720 Striga asiatica HOM05D000001 ORTHO05D004044 3.3e-50 203.8 541 33.1
Duzib150G1238 Durio zibethinus HOM05D000001 ORTHO05D004044 4.3e-50 203.4 550 32.7
Lsat_1_v5_gn_8_149721 Lactuca sativa HOM05D000001 ORTHO05D004044 9.5e-50 202.2 551 33.8
Actinidia29353 Actinidia chinensis HOM05D000001 ORTHO05D004044 2.8e-49 200.7 585 31.6
THA.LOC104804451 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 1.1e-48 198.7 560 32.1
Actinidia39673 Actinidia chinensis HOM05D000001 ORTHO05D004044 5.8e-47 193.0 584 32.0
HanXRQChr09g0248701 Helianthus annuus HOM05D000001 ORTHO05D004044 1.3e-46 191.8 545 31.6
TAR636G0641 Trochodendron aralioides HOM05D000001 ORTHO05D004044 2.9e-46 190.7 473 33.8
Hund25544 Selenicereus undatus HOM05D000001 ORTHO05D004044 4.9e-46 189.9 654 28.3
Zm00001eb278590 Zea mays HOM05D000001 ORTHO05D004044 6.4e-46 189.5 553 32.9
Lj7C209T10 Lonicera japonica HOM05D000001 ORTHO05D004044 4.6e-44 183.3 644 30.3
SEGI_25644 Sequoiadendron giganteum HOM05D000001 ORTHO05D004044 1.3e-43 181.8 538 32.0
BcaB08g35273 Brassica carinata HOM05D000001 ORTHO05D004044 1.7e-43 181.4 558 30.6
TAR667G0003 Trochodendron aralioides HOM05D000001 ORTHO05D004044 6.6e-43 179.5 433 32.6
ATR0598G100 Amborella trichopoda HOM05D000001 ORTHO05D004044 1.1e-42 178.7 567 30.0
Actinidia01324 Actinidia chinensis HOM05D000001 ORTHO05D004044 2.1e-41 174.5 484 33.3
ClCG05G015870 Citrullus lanatus HOM05D000001 ORTHO05D004044 3.6e-41 173.7 484 32.0
Migut.A00058 Erythranthe guttata HOM05D000001 ORTHO05D004044 1.8e-40 171.4 535 31.4
BcaB06g28092 Brassica carinata HOM05D000001 ORTHO05D004044 8.9e-40 169.1 524 31.1
Nn6g35692 Nelumbo nucifera HOM05D000001 ORTHO05D004044 1.5e-39 168.3 522 31.2
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 2.6e-39 167.5 515 32.4
BcaC02g08289 Brassica carinata HOM05D000001 ORTHO05D004044 5.8e-39 166.4 511 31.9
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 9.9e-39 165.6 515 32.2
BolC8t51400H Brassica oleracea HOM05D000001 ORTHO05D004044 1.3e-38 165.2 551 29.8
A09p55320 Brassica napus HOM05D000001 ORTHO05D004044 2.2e-38 164.5 556 30.9
BraA09t40935Z Brassica rapa HOM05D000001 ORTHO05D004044 2.9e-38 164.1 556 30.9
QL02p017294 Quercus lobata HOM05D000001 ORTHO05D004044 2.9e-38 164.1 426 32.9
C04p56020 Brassica napus HOM05D000001 ORTHO05D004044 3.8e-38 163.7 512 31.8
BolC4t27135H Brassica oleracea HOM05D000001 ORTHO05D004044 3.8e-38 163.7 512 31.8
BcaC07g40830 Brassica carinata HOM05D000001 ORTHO05D004044 8.4e-38 162.5 564 29.8
C08p38250 Brassica napus HOM05D000001 ORTHO05D004044 1.1e-37 162.2 552 29.7
CARHR115120 Cardamine hirsuta HOM05D000001 ORTHO05D004044 4.6e-36 156.8 488 31.4
Dinv40932 Davidia involucrata HOM05D000001 ORTHO05D004044 4.6e-36 156.8 441 30.6
SalBow4G2835 Salvia bowleyana HOM05D000001 ORTHO05D004044 1.7e-35 154.8 559 30.9
CDE05G1886 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 5.1e-35 153.3 237 43.9
EL10Ac2g02405 Beta vulgaris HOM05D000001 ORTHO05D004044 4.3e-34 150.2 433 29.6
Cpa.g.sc82.5 Carica papaya HOM05D000001 ORTHO05D004044 4.3e-34 150.2 313 37.7
CSS0007474 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 9.6e-34 149.1 438 29.5
unitig_4.g30334 Utricularia gibba HOM05D000001 ORTHO05D004044 1.4e-32 145.2 463 30.5
Gorai.004G286100 Gossypium raimondii HOM05D000001 ORTHO05D004044 5.3e-32 143.3 521 30.1
Potri.006G218900 Populus trichocarpa HOM05D000001 ORTHO05D004044 5.3e-32 143.3 410 29.8
Gohir.D08G268400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 9.9e-31 139.0 515 30.1
Ca_13092_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004044 6.4e-30 136.3 415 30.4
Gohir.A08G247200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 1.1e-29 135.6 519 29.3
vmacro00208 Vaccinium macrocarpon HOM05D000001 ORTHO05D004044 1.1e-29 135.6 854 24.0
Psat6g024040 Pisum sativum HOM05D000001 ORTHO05D004044 3.9e-27 127.1 415 30.8
Zm00001eb411920 Zea mays HOM05D000001 ORTHO05D004044 5.1e-27 126.7 273 36.6
Sc06g0000110 Simmondsia chinensis HOM05D000001 ORTHO05D004044 7.4e-26 122.9 410 29.5
Os02g0780550 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 1.3e-25 122.1 469 30.7
Sed0004805 Sechium edule HOM05D000001 ORTHO05D004044 2.4e-24 117.9 403 30.8
Zm00001eb217260 Zea mays HOM05D000001 ORTHO05D004044 9.0e-24 115.9 218 39.0
Zm00001eb340250 Zea mays HOM05D000001 ORTHO05D004044 5.8e-23 113.2 160 44.4
Pp3c4_25250 Physcomitrium patens HOM05D000001 ORTHO05D004044 1.1e-21 109.0 578 26.8
Pp3c26_4880 Physcomitrium patens HOM05D000001 ORTHO05D004044 1.2e-20 105.5 564 25.5
SHI28008 Sapria himalayana HOM05D000001 ORTHO05D004044 1.2e-20 105.5 561 26.4
unitig_748.g8235 Utricularia gibba HOM05D000001 ORTHO05D004044 1.1e-18 99.0 389 27.0
CSS0015944 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 3.3e-18 97.4 260 29.2
Hma1.2p1_2610F.1_g325350 Hydrangea macrophylla HOM05D000001 ORTHO05D004044 1.3e-17 95.5 147 46.9
SMO356G0739 Selaginella moellendorffii HOM05D000001 ORTHO05D004044 2.8e-17 94.4 521 26.5
CSS0016640 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 6.2e-17 93.2 148 44.6
CSS0041936 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 6.2e-17 93.2 148 44.6
Psat0s3154g0080 Pisum sativum HOM05D000001 ORTHO05D004044 1.4e-16 92.0 330 30.9
CDE05G0380 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 7.6e-15 86.3 196 31.6
AagrBONN_evm.TU.Sc2ySwM_117.1386 Anthoceros agrestis HOM05D000001 ORTHO05D004044 1.3e-14 85.5 572 24.5
Zm00001eb255250 Zea mays HOM05D004347 ORTHO05D005270 1.3e-14 85.5 140 42.9
Oeu060162.1 Olea europaea HOM05D000001 ORTHO05D004044 2.7e-12 77.8 317 27.1
Zm00001eb373910 Zea mays HOM05D000001 ORTHO05D004044 4.6e-12 77.0 233 30.5
CBR_g37677 Chara braunii HOM05D000001 ORTHO05D004044 2.5e-10 71.2 242 27.7
unitig_748.g8234 Utricularia gibba HOM05D000001 ORTHO05D004044 1.3e-09 68.9 84 52.4
TPR.G870 Trifolium pratense HOM05D000001 ORTHO05D004044 1.0e-06 59.3 71 49.3
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 2.9e-06 57.8 66 48.5


User provided reference genes

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