Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0170500 Oryza sativa ssp. japonica HOM05D007070 ORTHO05D008892 3.9e-62 241.9 124 100.0
Zm00001eb402240 Zea mays HOM05D007070 ORTHO05D008892 5.3e-59 231.5 122 94.3
Atru.chr11.1834 Acer truncatum HOM05D007070 ORTHO05D008892 3.0e-46 189.1 113 81.4
DCAR_007140 Daucus carota HOM05D007070 ORTHO05D008892 3.0e-46 189.1 120 75.8
HanXRQChr08g0209191 Helianthus annuus HOM05D007070 ORTHO05D008892 3.0e-46 189.1 119 74.8
COL.COLO4_22972 Corchorus olitorius HOM05D007070 ORTHO05D008892 3.9e-46 188.7 113 79.6
Thecc.02G352500 Theobroma cacao HOM05D007070 ORTHO05D008892 3.9e-46 188.7 113 80.5
Glyma.01G044500 Glycine max HOM05D007070 ORTHO05D008892 8.8e-46 187.6 113 79.6
TAR374G1105 Trochodendron aralioides HOM05D007070 ORTHO05D008892 8.8e-46 187.6 113 77.9
Cpa.g.sc183.28 Carica papaya HOM05D007070 ORTHO05D008892 1.1e-45 187.2 113 79.6
Haze_12036 Corylus avellana HOM05D007070 ORTHO05D008892 1.1e-45 187.2 113 80.5
Gorai.013G083500 Gossypium raimondii HOM05D007070 ORTHO05D008892 1.1e-45 187.2 113 78.8
CiPaw.05G138000 Carya illinoinensis HOM05D007070 ORTHO05D008892 1.5e-45 186.8 113 79.6
CDE05G3062 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 1.5e-45 186.8 113 78.8
Thhalv10008846m.g Eutrema salsugineum HOM05D007070 ORTHO05D008892 1.5e-45 186.8 113 79.6
FvH4_4g31650 Fragaria vesca HOM05D007070 ORTHO05D008892 1.5e-45 186.8 113 79.6
FAN07G2888 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.5e-45 186.8 113 79.6
FAN12G3127 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.5e-45 186.8 113 79.6
FAN17G0782 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.5e-45 186.8 113 79.6
RcHm_v2.0_Chr4g0440151 Rosa chinensis HOM05D007070 ORTHO05D008892 1.5e-45 186.8 113 79.6
AL1G26230 Arabidopsis lyrata HOM05D007070 ORTHO05D008892 2.0e-45 186.4 113 79.6
CARHR014780 Cardamine hirsuta HOM05D007070 ORTHO05D008892 2.0e-45 186.4 113 79.6
Duzib251G0126 Durio zibethinus HOM05D007070 ORTHO05D008892 2.0e-45 186.4 113 78.8
Manes.05G098800 Manihot esculenta HOM05D007070 ORTHO05D008892 2.0e-45 186.4 113 79.6
AT1G14345 Arabidopsis thaliana HOM05D007070 ORTHO05D008892 2.6e-45 186.0 113 79.6
Lj3P1040T26 Lonicera japonica HOM05D007070 ORTHO05D008892 2.6e-45 186.0 113 78.8
BcaB02g06484 Brassica carinata HOM05D007070 ORTHO05D008892 3.3e-45 185.7 113 78.8
Gohir.A13G072600 Gossypium hirsutum HOM05D007070 ORTHO05D008892 3.3e-45 185.7 113 77.9
Hma1.2p1_0598F.1_g186810 Hydrangea macrophylla HOM05D007070 ORTHO05D008892 3.3e-45 185.7 113 79.6
Lj2g0006172 Lotus japonicus HOM05D007070 ORTHO05D008892 3.3e-45 185.7 113 80.5
PGR119G1526 Punica granatum HOM05D007070 ORTHO05D008892 3.3e-45 185.7 113 77.9
Actinidia31196 Actinidia chinensis HOM05D007070 ORTHO05D008892 4.4e-45 185.3 113 78.8
AUR62005745 Chenopodium quinoa HOM05D007070 ORTHO05D008892 4.4e-45 185.3 113 77.9
FAN22G1781 Fragaria x ananassa HOM05D007070 ORTHO05D008892 4.4e-45 185.3 113 78.8
Sed0007814 Sechium edule HOM05D007070 ORTHO05D008892 4.4e-45 185.3 113 77.0
TWI75G1629 Tripterygium wilfordii HOM05D007070 ORTHO05D008892 4.4e-45 185.3 122 74.6
Aqoxy3G03327 Aquilegia oxysepala HOM05D007070 ORTHO05D008892 5.7e-45 184.9 113 77.9
arahy.Tifrunner.gnm1.ann1.P1GF9J Arachis hypogaea HOM05D007070 ORTHO05D008892 5.7e-45 184.9 113 80.5
C05p12140 Brassica napus HOM05D007070 ORTHO05D008892 5.7e-45 184.9 113 77.9
BolC5t29966H Brassica oleracea HOM05D007070 ORTHO05D008892 5.7e-45 184.9 113 77.9
Eucgr.G02521 Eucalyptus grandis HOM05D007070 ORTHO05D008892 5.7e-45 184.9 112 79.5
Potri.010G093300 Populus trichocarpa HOM05D007070 ORTHO05D008892 5.7e-45 184.9 113 78.8
arahy.Tifrunner.gnm1.ann1.H49BTR Arachis hypogaea HOM05D007070 ORTHO05D008892 7.4e-45 184.5 113 79.6
A06p10330 Brassica napus HOM05D007070 ORTHO05D008892 7.4e-45 184.5 113 77.9
BraA06t24215Z Brassica rapa HOM05D007070 ORTHO05D008892 7.4e-45 184.5 113 77.9
CANSAT56G2723 Cannabis sativa HOM05D007070 ORTHO05D008892 7.4e-45 184.5 116 74.1
CsaV3_5G032500 Cucumis sativus L. HOM05D007070 ORTHO05D008892 7.4e-45 184.5 113 78.8
CAN.G375.28 Capsicum annuum HOM05D007070 ORTHO05D008892 9.7e-45 184.1 118 75.4
MELO3C012078.2 Cucumis melo HOM05D007070 ORTHO05D008892 9.7e-45 184.1 113 78.8
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 9.7e-45 184.1 113 77.9
Glyma.02G019200 Glycine max HOM05D007070 ORTHO05D008892 9.7e-45 184.1 113 78.8
Gohir.D13G072700 Gossypium hirsutum HOM05D007070 ORTHO05D008892 9.7e-45 184.1 113 77.9
MD13G1074900 Malus domestica HOM05D007070 ORTHO05D008892 9.7e-45 184.1 113 77.9
Medtr5g038970 Medicago truncatula HOM05D007070 ORTHO05D008892 9.7e-45 184.1 112 79.5
Carub.0001s1403 Capsella rubella HOM05D007070 ORTHO05D008892 1.3e-44 183.7 113 77.0
MBI05_g00391_MAGBIO Magnolia biondii HOM05D007070 ORTHO05D008892 1.3e-44 183.7 113 77.9
Psat2g122360 Pisum sativum HOM05D007070 ORTHO05D008892 1.3e-44 183.7 112 79.5
QL03p064901 Quercus lobata HOM05D007070 ORTHO05D008892 1.3e-44 183.7 113 77.9
Sabra10G0065800 Salix brachista HOM05D007070 ORTHO05D008892 1.3e-44 183.7 113 77.0
SalBow2G0737 Salvia bowleyana HOM05D007070 ORTHO05D008892 1.3e-44 183.7 113 77.9
SalBow2G1571 Salvia bowleyana HOM05D007070 ORTHO05D008892 1.3e-44 183.7 113 77.9
Lsat_1_v5_gn_8_52140 Lactuca sativa HOM05D007070 ORTHO05D008892 1.7e-44 183.3 118 73.7
TAR622G0001 Trochodendron aralioides HOM05D007070 ORTHO05D008892 1.7e-44 183.3 113 77.0
Ah.02g131260 Amaranthus hybridus HOM05D007070 ORTHO05D008892 2.2e-44 183.0 113 77.0
Prupe.1G271300 Prunus persica HOM05D007070 ORTHO05D008892 2.2e-44 183.0 113 77.0
Sp1g12710 Schrenkiella parvula HOM05D007070 ORTHO05D008892 2.2e-44 183.0 113 77.0
Aa31LG1G700 Aethionema arabicum HOM05D007070 ORTHO05D008892 2.8e-44 182.6 113 77.0
CSS0037166 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 2.8e-44 182.6 113 77.0
CSS0050316 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 2.8e-44 182.6 113 77.0
Cc11_g13320 Coffea canephora HOM05D007070 ORTHO05D008892 2.8e-44 182.6 113 77.9
SGA_v2.0_scaffold302G47841 Striga asiatica HOM05D007070 ORTHO05D008892 2.8e-44 182.6 113 77.0
TPR.G36542 Trifolium pratense HOM05D007070 ORTHO05D008892 3.7e-44 182.2 112 77.7
Migut.L01320 Erythranthe guttata HOM05D007070 ORTHO05D008892 4.8e-44 181.8 113 77.0
Ciclev10032797m.g Citrus clementina HOM05D007070 ORTHO05D008892 6.3e-44 181.4 113 77.9
Lalb_Chr10g0098121 Lupinus albus HOM05D007070 ORTHO05D008892 6.3e-44 181.4 113 76.1
Solyc01g010640.3 Solanum lycopersicum HOM05D007070 ORTHO05D008892 6.3e-44 181.4 118 73.7
Sopen01g006270 Solanum pennellii HOM05D007070 ORTHO05D008892 6.3e-44 181.4 118 73.7
PGSC0003DMG400000874 Solanum tuberosum HOM05D007070 ORTHO05D008892 6.3e-44 181.4 118 73.7
Phvul.002G088700 Phaseolus vulgaris HOM05D007070 ORTHO05D008892 8.2e-44 181.0 113 75.2
Duzib268G0688 Durio zibethinus HOM05D007070 ORTHO05D008892 1.1e-43 180.6 113 76.1
VMungo1215G0639 Vigna mungo HOM05D007070 ORTHO05D008892 1.1e-43 180.6 113 76.1
Nitab4.5_0000141g0310 Nicotiana tabacum HOM05D007070 ORTHO05D008892 1.4e-43 180.3 112 75.9
Nitab4.5_0012600g0010 Nicotiana tabacum HOM05D007070 ORTHO05D008892 1.4e-43 180.3 112 75.9
HPP92_018585 Vanilla planifolia HOM05D007070 ORTHO05D008892 1.8e-43 179.9 125 68.8
ATR0564G356 Amborella trichopoda HOM05D007070 ORTHO05D008892 2.4e-43 179.5 113 77.0
MSTRG.13406 Avicennia marina HOM05D007070 ORTHO05D008892 2.4e-43 179.5 113 75.2
ClCG05G024460 Citrullus lanatus HOM05D007070 ORTHO05D008892 4.1e-43 178.7 110 78.2
Rhsim12G0131600 Rhododendron simsii HOM05D007070 ORTHO05D008892 4.1e-43 178.7 122 69.7
RhsimUnG0241900 Rhododendron simsii HOM05D007070 ORTHO05D008892 4.1e-43 178.7 122 69.7
Ca_04760_v3 Cicer arietinum L. HOM05D007070 ORTHO05D008892 7.0e-43 177.9 113 77.0
HPP92_018595 Vanilla planifolia HOM05D007070 ORTHO05D008892 9.1e-43 177.6 125 68.0
ECA236G0127 Erigeron canadensis HOM05D007070 ORTHO05D008892 1.2e-42 177.2 122 70.5
PSO591G0158 Papaver somniferum HOM05D007070 ORTHO05D008892 1.3e-41 173.7 113 74.3
PSO832G2327 Papaver somniferum HOM05D007070 ORTHO05D008892 1.3e-41 173.7 113 74.3
Sc04g0008310 Simmondsia chinensis HOM05D007070 ORTHO05D008892 1.3e-41 173.7 113 77.0
THA.LOC104805942 Tarenaya hassleriana HOM05D007070 ORTHO05D008892 1.3e-41 173.7 106 79.2
CDE05G3277 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 2.9e-41 172.6 113 74.3
CBR_g47945 Chara braunii HOM05D007070 ORTHO05D008892 8.5e-41 171.0 116 67.2
Peaxi162Scf00026g00288 Petunia axillaris HOM05D007070 ORTHO05D008892 1.5e-40 170.2 121 69.4
SEGI_28311 Sequoiadendron giganteum HOM05D007070 ORTHO05D008892 7.2e-40 167.9 116 69.8
unitig_699.g19919 Utricularia gibba HOM05D007070 ORTHO05D008892 2.1e-39 166.4 113 73.5
SMO329G0045 Selaginella moellendorffii HOM05D007070 ORTHO05D008892 1.4e-38 163.7 117 64.1
AagrBONN_evm.TU.Sc2ySwM_362.2904 Anthoceros agrestis HOM05D007070 ORTHO05D008892 5.7e-37 158.3 109 67.0
MSTRG.684 Avicennia marina HOM05D007070 ORTHO05D008892 2.8e-36 156.0 105 72.4
Mapoly0002s0258 Marchantia polymorpha HOM05D007070 ORTHO05D008892 3.7e-36 155.6 113 66.4
BcaC05g25332 Brassica carinata HOM05D007070 ORTHO05D008892 1.6e-34 150.2 113 68.1
AUR62028813 Chenopodium quinoa HOM05D007070 ORTHO05D008892 1.4e-27 127.1 113 59.3
Sc04g0008340 Simmondsia chinensis HOM05D007070 ORTHO05D008892 4.1e-27 125.6 113 60.2
MCO16G462 Micromonas commoda HOM05D007070 ORTHO05D008892 7.5e-21 104.8 122 42.6
Cre08.g358540 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 9.8e-21 104.4 109 45.0
PRCOL_00004582 Prasinoderma coloniale HOM05D007070 ORTHO05D008892 2.8e-15 86.3 99 45.5
Atru.chr2.2148 Acer truncatum HOM05D007070 ORTHO05D008892 1.3e-12 77.4 41 87.8
Cre07.g321300 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 6.4e-12 75.1 109 30.3


User provided reference genes

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