Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.0e-57 226.5 114 100.0
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 4.4e-40 167.9 112 75.9
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 3.1e-33 145.2 118 67.8
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 1.3e-28 129.8 88 77.3
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 2.0e-24 115.9 74 71.6
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 2.0e-24 115.9 90 63.3
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 2.6e-24 115.5 65 81.5
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 5.8e-24 114.4 78 65.4
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 5.8e-24 114.4 65 80.0
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 7.6e-24 114.0 76 67.1
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 7.6e-24 114.0 76 67.1
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 7.6e-24 114.0 74 70.3
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 7.6e-24 114.0 76 67.1
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 7.6e-24 114.0 74 70.3
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 9.9e-24 113.6 70 71.4
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 1.3e-23 113.2 68 75.0
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 1.7e-23 112.8 73 68.5
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 2.2e-23 112.5 95 58.9
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 3.8e-23 111.7 114 57.0
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 3.8e-23 111.7 100 58.0
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 3.8e-23 111.7 62 75.8
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 3.8e-23 111.7 62 75.8
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 3.8e-23 111.7 100 54.0
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 6.4e-23 110.9 74 68.9
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 6.4e-23 110.9 61 73.8
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 6.4e-23 110.9 78 71.8
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 1.1e-22 110.2 94 58.5
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 1.1e-22 110.2 98 58.2
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 1.4e-22 109.8 67 70.1
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.4e-22 109.0 94 58.5
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.4e-22 109.0 59 76.3
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.4e-22 109.0 59 76.3
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 2.4e-22 109.0 62 74.2
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 2.4e-22 109.0 62 74.2
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 2.4e-22 109.0 62 74.2
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 4.2e-22 108.2 63 74.6
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 5.4e-22 107.8 62 74.2
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 5.4e-22 107.8 105 56.2
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 5.4e-22 107.8 105 56.2
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 9.3e-22 107.1 66 72.7
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 9.3e-22 107.1 105 55.2
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 9.3e-22 107.1 94 57.4
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 9.3e-22 107.1 100 53.0
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 1.2e-21 106.7 95 55.8
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 1.6e-21 106.3 62 74.2
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.6e-21 106.3 73 69.9
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.6e-21 106.3 61 75.4
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.1e-21 105.9 64 78.1
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.1e-21 105.9 74 62.2
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 2.7e-21 105.5 60 73.3
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 2.7e-21 105.5 63 71.4
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.7e-21 105.5 64 71.9
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 4.6e-21 104.8 100 53.0
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 4.6e-21 104.8 117 51.3
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 4.6e-21 104.8 56 76.8
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 4.6e-21 104.8 73 67.1
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 6.0e-21 104.4 120 53.3
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 6.0e-21 104.4 101 57.4
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 7.8e-21 104.0 57 75.4
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 7.8e-21 104.0 56 75.0
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 7.8e-21 104.0 76 61.8
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 7.8e-21 104.0 94 56.4
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 7.8e-21 104.0 62 75.8
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.3e-20 103.2 101 52.5
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.3e-20 103.2 74 60.8
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 1.7e-20 102.8 80 61.2
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.7e-20 102.8 89 59.6
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 2.3e-20 102.4 111 50.5
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 3.0e-20 102.1 124 50.0
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.0e-20 102.1 73 67.1
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 3.0e-20 102.1 111 49.5
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 3.9e-20 101.7 124 49.2
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 5.1e-20 101.3 62 69.4
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 5.1e-20 101.3 126 49.2
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.1e-20 101.3 63 66.7
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 6.6e-20 100.9 100 55.0
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 6.6e-20 100.9 62 67.7
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 6.6e-20 100.9 62 67.7
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 6.6e-20 100.9 62 67.7
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 6.6e-20 100.9 103 52.4
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 1.1e-19 100.1 108 52.8
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 1.1e-19 100.1 83 54.2
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.1e-19 100.1 63 66.7
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 1.1e-19 100.1 115 48.7
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.9e-19 99.4 121 49.6
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.9e-19 99.4 107 54.2
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 1.9e-19 99.4 112 48.2
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 2.5e-19 99.0 122 50.8
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 2.5e-19 99.0 104 50.0
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.5e-19 99.0 61 67.2
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 4.3e-19 98.2 135 46.7
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 5.6e-19 97.8 118 49.2
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 7.3e-19 97.4 52 76.9
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 9.6e-19 97.1 64 64.1
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 9.6e-19 97.1 98 50.0
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 9.6e-19 97.1 67 64.2
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 9.6e-19 97.1 112 50.0
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 1.6e-18 96.3 56 71.4
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.6e-18 96.3 80 53.8
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.6e-18 96.3 63 65.1
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 2.8e-18 95.5 87 52.9
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 2.8e-18 95.5 87 52.9
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 2.8e-18 95.5 48 77.1
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 3.6e-18 95.1 120 48.3
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 3.6e-18 95.1 53 75.5
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 4.8e-18 94.7 61 65.6
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 6.2e-18 94.4 107 49.5
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 6.2e-18 94.4 113 51.3
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 8.1e-18 94.0 91 51.6
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 8.1e-18 94.0 53 73.6
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 8.1e-18 94.0 53 73.6
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 1.8e-17 92.8 53 71.7
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 3.1e-17 92.0 62 64.5
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 5.3e-17 91.3 85 50.6
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 1.2e-16 90.1 60 63.3
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 2.0e-16 89.4 96 49.0
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 2.6e-16 89.0 52 71.2
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 1.7e-15 86.3 112 43.8
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 2.9e-15 85.5 118 48.3
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 4.9e-15 84.7 51 68.6
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 8.4e-15 84.0 141 44.7
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 1.9e-14 82.8 112 42.9
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 1.9e-14 82.8 62 59.7
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 4.2e-14 81.6 103 45.6
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 3.5e-13 78.6 49 67.3
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 7.9e-13 77.4 115 45.2
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.3e-12 76.6 81 46.9
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 6.7e-12 74.3 118 40.7
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 9.6e-11 70.5 76 48.7
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 9.6e-11 70.5 48 70.8
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 6.2e-10 67.8 59 54.2
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 1.5e-08 63.2 61 54.1
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 2.6e-08 62.4 68 51.5
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 2.6e-08 62.4 84 48.8
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 4.5e-08 61.6 89 48.3
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 5.8e-08 61.2 38 73.7
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.3e-07 60.1 45 68.9
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 1.7e-07 59.7 88 47.7
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 2.9e-07 58.9 59 49.2
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 2.9e-07 58.9 98 43.9
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 2.9e-07 58.9 98 43.9
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 1.4e-06 56.6 96 43.8
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 7.1e-06 54.3 49 53.1


User provided reference genes

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