Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.0e-256 888.6 458 100.0
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 3.9e-220 768.1 459 85.8
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 2.6e-160 569.3 442 63.3
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 4.5e-160 568.5 455 62.6
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.9e-159 565.8 428 64.3
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.1e-158 563.9 447 63.5
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.9e-158 563.1 447 62.9
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 4.2e-158 562.0 447 61.3
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 1.6e-157 560.1 463 61.8
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 4.7e-157 558.5 463 60.9
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 1.8e-156 556.6 447 62.9
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 8.8e-156 554.3 457 61.1
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 2.0e-155 553.1 445 62.7
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.4e-155 552.0 428 64.0
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 5.7e-155 551.6 450 61.6
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 5.7e-155 551.6 428 63.1
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 5.7e-155 551.6 457 60.8
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.3e-154 550.4 443 61.6
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 6.3e-154 548.1 428 63.6
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 6.3e-154 548.1 449 60.1
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 1.1e-153 547.4 444 61.5
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.1e-153 547.4 456 61.2
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.8e-153 546.6 430 61.9
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.8e-153 546.6 430 61.9
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.8e-153 546.6 418 63.6
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 5.3e-153 545.0 441 61.7
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.2e-152 543.9 428 63.3
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 2.0e-152 543.1 432 62.0
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 2.7e-152 542.7 460 58.7
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 5.9e-152 541.6 450 60.2
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.7e-151 540.0 455 59.6
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.7e-151 540.0 427 61.8
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 5.0e-151 538.5 446 61.0
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 1.1e-150 537.3 456 61.0
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.2e-150 535.8 446 60.5
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 3.2e-150 535.8 461 59.7
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 2.7e-149 532.7 444 59.7
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.0e-148 530.8 445 61.3
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.0e-148 530.8 428 60.7
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.8e-148 530.0 385 67.0
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.8e-148 530.0 427 60.9
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 2.3e-148 529.6 446 59.9
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 2.3e-148 529.6 429 61.3
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 5.2e-148 528.5 446 59.6
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 5.2e-148 528.5 443 59.1
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 6.8e-148 528.1 445 59.1
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 6.8e-148 528.1 460 58.3
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 1.2e-147 527.3 433 61.2
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.2e-147 527.3 428 61.0
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.2e-147 527.3 497 55.9
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.4e-147 525.8 447 59.3
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 3.4e-147 525.8 447 59.1
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 3.4e-147 525.8 431 61.9
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 4.4e-147 525.4 387 68.2
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 4.4e-147 525.4 447 59.3
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 4.4e-147 525.4 447 58.8
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 4.4e-147 525.4 428 61.4
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 5.7e-147 525.0 446 59.2
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 5.7e-147 525.0 447 59.3
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 9.8e-147 524.2 443 59.4
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.3e-146 523.9 448 59.2
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.7e-146 523.5 446 59.2
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 1.7e-146 523.5 436 59.4
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 2.2e-146 523.1 442 58.8
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 2.2e-146 523.1 445 59.1
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 4.8e-146 521.9 439 58.8
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 4.8e-146 521.9 476 56.3
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 6.3e-146 521.5 445 59.6
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 1.1e-145 520.8 444 58.6
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.1e-145 520.8 443 59.1
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.8e-145 520.0 457 57.5
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 2.4e-145 519.6 455 56.5
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 5.4e-145 518.5 447 58.8
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 7.0e-145 518.1 444 59.0
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 7.0e-145 518.1 457 58.6
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 9.1e-145 517.7 404 62.9
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 1.2e-144 517.3 444 58.8
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.2e-144 517.3 446 59.2
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 2.0e-144 516.5 472 56.4
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 2.7e-144 516.2 472 56.4
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 3.5e-144 515.8 444 58.6
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 5.9e-144 515.0 444 57.7
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 5.9e-144 515.0 432 59.0
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 5.9e-144 515.0 439 58.3
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.7e-143 513.5 441 58.5
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 5.0e-143 511.9 431 59.9
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 8.6e-143 511.1 432 59.3
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 1.5e-142 510.4 432 58.6
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.5e-142 510.4 431 59.4
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 1.5e-142 510.4 428 60.0
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.9e-142 510.0 432 58.8
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 3.2e-142 509.2 432 58.6
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 3.2e-142 509.2 432 58.6
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 3.2e-142 509.2 464 56.5
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 4.2e-142 508.8 431 58.9
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 4.2e-142 508.8 554 49.8
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 7.2e-142 508.1 432 58.3
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 7.2e-142 508.1 444 57.7
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 9.5e-142 507.7 384 63.8
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 2.1e-141 506.5 432 59.7
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 2.1e-141 506.5 432 59.7
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.8e-141 506.1 431 58.2
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 6.1e-141 505.0 432 59.7
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.0e-140 504.2 432 58.3
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.8e-140 503.4 482 53.7
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 8.8e-140 501.1 389 62.7
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.5e-139 500.4 466 55.8
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 2.2e-138 496.5 459 56.6
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 5.0e-135 485.3 453 56.5
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 7.3e-134 481.5 449 56.6
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 4.7e-133 478.8 428 55.8
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 8.9e-132 474.6 482 51.5
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 8.3e-130 468.0 396 59.1
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 2.0e-128 463.4 437 51.9
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 2.3e-127 459.9 439 52.6
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 1.9e-126 456.8 431 53.6
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 2.5e-126 456.4 454 52.0
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 3.3e-126 456.1 389 59.9
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 9.5e-126 454.5 376 60.1
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 9.2e-121 438.0 402 56.5
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 1.1e-118 431.0 441 49.2
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 2.3e-116 423.3 456 47.6
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.6e-115 419.9 442 47.7
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 9.5e-110 401.4 342 59.1
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 8.9e-108 394.8 441 45.4
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 2.1e-104 383.6 271 67.2
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 2.1e-101 373.6 450 48.2
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.2e-96 357.8 428 48.4
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.6e-96 357.5 251 70.9
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.6e-94 349.0 441 42.6
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 7.3e-94 348.6 394 48.0
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.3e-87 327.8 321 53.3
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.2e-82 310.5 258 62.0
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.4e-76 291.2 450 37.6
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 6.0e-72 275.8 295 48.5
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 2.8e-69 266.9 200 66.0
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.4e-51 206.8 131 74.0
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 1.3e-50 204.9 314 40.8
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.1e-48 197.6 158 61.4
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.1e-44 185.3 439 30.1
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.3e-44 183.0 160 58.1
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 4.5e-43 179.9 197 48.2
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.7e-43 179.1 101 91.1
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 3.6e-40 170.2 180 50.6
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 5.2e-39 166.4 121 68.6
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 1.7e-34 151.4 160 49.4
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.5e-30 138.3 94 69.1
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 7.7e-27 125.9 139 51.1
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.2e-24 118.6 122 53.3
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 3.7e-21 107.1 64 75.0
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.1e-17 95.5 111 45.0
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 9.2e-12 75.9 84 45.2
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 2.3e-10 71.2 57 54.4
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 8.6e-10 69.3 40 75.0
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 1.1e-09 68.9 56 58.9
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.5e-09 67.8 43 74.4
Zm00001eb005240 Zea mays HOM05D004544 ORTHO05D443039 4.3e-09 67.0 40 75.0
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 6.2e-08 63.2 46 58.7


User provided reference genes

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