Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 2.6e-69 265.4 148 100.0
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 2.7e-45 185.7 108 86.1
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 1.5e-35 153.3 98 75.5
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 1.5e-35 153.3 98 75.5
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 5.6e-35 151.4 101 72.3
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 1.2e-34 150.2 98 75.5
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 4.7e-34 148.3 97 77.3
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 6.1e-34 147.9 95 73.7
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 8.0e-34 147.5 97 76.3
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 1.4e-33 146.7 97 74.2
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 1.4e-33 146.7 97 74.2
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 1.8e-33 146.4 102 70.6
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 2.3e-33 146.0 95 73.7
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 2.3e-33 146.0 97 76.3
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 2.3e-33 146.0 98 70.4
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 2.3e-33 146.0 98 70.4
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 3.0e-33 145.6 96 76.0
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 5.2e-33 144.8 95 74.7
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 5.2e-33 144.8 97 74.2
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 5.2e-33 144.8 97 74.2
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 5.2e-33 144.8 96 75.0
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 5.2e-33 144.8 96 75.0
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 6.8e-33 144.4 97 74.2
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 6.8e-33 144.4 97 74.2
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 8.9e-33 144.1 101 74.3
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 8.9e-33 144.1 97 75.3
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 8.9e-33 144.1 97 75.3
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 8.9e-33 144.1 99 72.7
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 1.2e-32 143.7 98 73.5
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 1.2e-32 143.7 95 75.8
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.0e-32 142.9 97 73.2
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 2.0e-32 142.9 97 74.2
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 2.6e-32 142.5 96 72.9
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 2.6e-32 142.5 97 70.1
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 2.6e-32 142.5 100 71.0
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 2.6e-32 142.5 98 73.5
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 2.6e-32 142.5 98 73.5
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 3.4e-32 142.1 99 70.7
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 3.4e-32 142.1 100 70.0
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 4.4e-32 141.7 101 73.3
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 4.4e-32 141.7 99 70.7
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 4.4e-32 141.7 96 69.8
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 4.4e-32 141.7 97 73.2
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 4.4e-32 141.7 97 73.2
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 5.8e-32 141.4 95 71.6
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 5.8e-32 141.4 96 72.9
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 7.5e-32 141.0 95 73.7
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 7.5e-32 141.0 95 73.7
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 7.5e-32 141.0 97 73.2
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 7.5e-32 141.0 97 70.1
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 7.5e-32 141.0 97 71.1
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 7.5e-32 141.0 95 70.5
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 9.8e-32 140.6 97 70.1
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 9.8e-32 140.6 96 75.0
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 9.8e-32 140.6 96 75.0
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 9.8e-32 140.6 100 70.0
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 9.8e-32 140.6 97 70.1
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 1.7e-31 139.8 95 73.7
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 1.7e-31 139.8 97 71.1
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 1.7e-31 139.8 98 74.5
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 2.2e-31 139.4 99 67.7
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 3.7e-31 138.7 97 68.0
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 3.7e-31 138.7 95 70.5
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 4.9e-31 138.3 95 68.4
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 4.9e-31 138.3 99 72.7
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 4.9e-31 138.3 98 69.4
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 4.9e-31 138.3 95 72.6
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 6.4e-31 137.9 96 69.8
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.1e-30 137.1 95 68.4
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 1.1e-30 137.1 95 70.5
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 1.1e-30 137.1 95 70.5
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.4e-30 136.7 97 71.1
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 1.4e-30 136.7 94 69.1
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 2.4e-30 136.0 96 66.7
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 3.2e-30 135.6 96 69.8
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 4.1e-30 135.2 97 70.1
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 4.1e-30 135.2 96 69.8
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 4.1e-30 135.2 96 69.8
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 4.1e-30 135.2 96 69.8
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 4.1e-30 135.2 96 69.8
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 4.1e-30 135.2 96 69.8
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 4.1e-30 135.2 96 69.8
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 4.1e-30 135.2 96 69.8
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 4.1e-30 135.2 95 67.4
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 4.1e-30 135.2 96 69.8
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 4.1e-30 135.2 95 68.4
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 5.4e-30 134.8 96 69.8
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 5.4e-30 134.8 96 69.8
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 5.4e-30 134.8 96 69.8
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 7.0e-30 134.4 97 70.1
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 7.0e-30 134.4 97 70.1
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 7.0e-30 134.4 98 68.4
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 1.2e-29 133.7 96 69.8
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 1.2e-29 133.7 89 70.8
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 1.6e-29 133.3 97 69.1
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 1.6e-29 133.3 100 67.0
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 1.6e-29 133.3 95 69.5
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 2.0e-29 132.9 96 68.8
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 2.0e-29 132.9 97 68.0
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 2.7e-29 132.5 96 68.8
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 3.5e-29 132.1 89 73.0
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 7.8e-29 131.0 97 69.1
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 1.3e-28 130.2 99 67.7
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 2.3e-28 129.4 91 70.3
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 2.3e-28 129.4 91 70.3
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 2.3e-28 129.4 96 67.7
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 1.5e-27 126.7 81 75.3
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 1.5e-27 126.7 99 66.7
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.5e-27 126.7 99 63.6
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.5e-27 126.7 99 63.6
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 1.9e-27 126.3 97 62.9
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 1.9e-27 126.3 89 66.3
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 1.9e-27 126.3 73 76.7
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 1.9e-27 126.3 99 63.6
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.9e-27 126.3 99 63.6
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 2.5e-27 125.9 89 67.4
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 4.3e-27 125.2 99 62.6
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.1e-26 122.9 69 79.7
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 2.8e-26 122.5 81 72.8
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 3.1e-25 119.0 68 77.9
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 6.4e-23 111.3 65 73.8
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 3.9e-20 102.1 87 57.5
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 5.1e-20 101.7 68 66.2
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 2.5e-19 99.4 77 58.4
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 4.3e-19 98.6 68 64.7
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 3.1e-17 92.4 57 70.2
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 3.4e-16 89.0 67 61.2
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 9.9e-16 87.4 53 69.8
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 1.3e-15 87.0 65 58.5
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 3.2e-14 82.4 64 64.1
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 3.2e-14 82.4 64 64.1
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 2.7e-13 79.3 53 67.9
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 6.0e-13 78.2 49 71.4
Gorai.002G169600 Gossypium raimondii HOM05D005547 ORTHO05D006887 2.1e-10 69.7 96 43.8
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 2.4e-09 66.2 90 43.3
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 1.5e-08 63.5 68 48.5


User provided reference genes

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