Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0126900 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 2.8e-53 211.8 120 100.0
Zm00001eb073340 Zea mays HOM05D007943 ORTHO05D010047 2.1e-16 89.4 75 60.0
Zm00001eb001970 Zea mays HOM05D007943 ORTHO05D010047 1.8e-15 86.3 66 69.7
Os04g0577375 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 1.5e-14 83.2 73 60.3
Os03g0315200 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 8.3e-13 77.4 68 57.4
Zm00001eb260810 Zea mays HOM05D007943 ORTHO05D010047 1.5e-09 66.6 59 61.0
Duzib133G1419 Durio zibethinus HOM05D007943 ORTHO05D010047 1.2e-08 63.5 63 39.7
Os08g0113900 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 2.1e-08 62.8 52 57.7
Oeu042966.1 Olea europaea HOM05D007943 ORTHO05D010047 2.8e-08 62.4 56 48.2
MD07G1157400 Malus domestica HOM05D007943 ORTHO05D010047 3.6e-08 62.0 49 53.1
HPP92_015077 Vanilla planifolia HOM05D000968 ORTHO05D001687 4.7e-08 61.6 56 50.0
Sabra02G0135900 Salix brachista HOM05D007943 ORTHO05D010047 8.0e-08 60.8 47 53.2
CiPaw.01G081100 Carya illinoinensis HOM05D007943 ORTHO05D010047 1.4e-07 60.1 47 55.3
CSS0001750 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 1.8e-07 59.7 47 46.8
Lj3g0013373 Lotus japonicus HOM05D007943 ORTHO05D010047 1.8e-07 59.7 64 42.2
Haze_15717 Corylus avellana HOM05D007943 ORTHO05D010047 2.3e-07 59.3 85 40.0
FvH4_7g17420 Fragaria vesca HOM05D007943 ORTHO05D010047 2.3e-07 59.3 67 41.8
FAN06G1823 Fragaria x ananassa HOM05D007943 ORTHO05D010047 2.3e-07 59.3 67 41.8
Potri.002G177700 Populus trichocarpa HOM05D007943 ORTHO05D010047 2.3e-07 59.3 47 48.9
Prupe.2G195800 Prunus persica HOM05D007943 ORTHO05D010047 2.3e-07 59.3 47 51.1
FAN10G1708 Fragaria x ananassa HOM05D007943 ORTHO05D010047 3.0e-07 58.9 57 45.6
MD01G1087200 Malus domestica HOM05D007943 ORTHO05D010047 3.0e-07 58.9 47 53.2
Thecc.01G335100 Theobroma cacao HOM05D007943 ORTHO05D010047 3.0e-07 58.9 63 38.1
FAN01G2944 Fragaria x ananassa HOM05D007943 ORTHO05D010047 4.0e-07 58.5 57 45.6
FAN03G2903 Fragaria x ananassa HOM05D007943 ORTHO05D010047 4.0e-07 58.5 57 45.6
FAN10G0207 Fragaria x ananassa HOM05D007943 ORTHO05D010047 4.0e-07 58.5 57 45.6
RcHm_v2.0_Chr1g0360861 Rosa chinensis HOM05D007943 ORTHO05D010047 4.0e-07 58.5 57 45.6
Lalb_Chr10g0100821 Lupinus albus HOM05D007943 ORTHO05D010047 5.2e-07 58.2 47 48.9
COL.COLO4_06217 Corchorus olitorius HOM05D007943 ORTHO05D010047 6.8e-07 57.8 48 45.8
Gohir.D07G139100 Gossypium hirsutum HOM05D007943 ORTHO05D010047 8.9e-07 57.4 51 45.1
Gorai.001G151200 Gossypium raimondii HOM05D007943 ORTHO05D010047 8.9e-07 57.4 51 45.1
Glyma.16G020300 Glycine max HOM05D007943 ORTHO05D010047 1.2e-06 57.0 47 51.1
Aqoxy7G00012 Aquilegia oxysepala HOM05D007943 ORTHO05D010047 2.0e-06 56.2 62 41.9
Hund16743 Selenicereus undatus HOM05D007943 ORTHO05D010047 2.0e-06 56.2 74 37.8
Gohir.A11G100000 Gossypium hirsutum HOM05D007943 ORTHO05D010047 3.4e-06 55.5 44 47.7
Gohir.D11G104700 Gossypium hirsutum HOM05D007943 ORTHO05D010047 3.4e-06 55.5 44 47.7
Gorai.007G112000 Gossypium raimondii HOM05D007943 ORTHO05D010047 3.4e-06 55.5 44 47.7
Sc23g0001870 Simmondsia chinensis HOM05D007943 ORTHO05D010047 3.4e-06 55.5 47 48.9
Glyma.19G259000 Glycine max HOM05D007943 ORTHO05D010047 4.4e-06 55.1 72 40.3
TAR629G3284 Trochodendron aralioides HOM05D007943 ORTHO05D010047 4.4e-06 55.1 44 50.0
QL08p046777 Quercus lobata HOM05D007943 ORTHO05D010047 5.7e-06 54.7 68 39.7
Glyma.07G051200 Glycine max HOM05D007943 ORTHO05D010047 7.5e-06 54.3 65 43.1
GSVIVG01027420001 Vitis vinifera HOM05D007943 ORTHO05D010047 7.5e-06 54.3 47 46.8
ClCG05G000500 Citrullus lanatus HOM05D007943 ORTHO05D010047 9.8e-06 53.9 66 43.9
Gohir.A07G134500 Gossypium hirsutum HOM05D007943 ORTHO05D010047 9.8e-06 53.9 71 35.2


User provided reference genes

Program Settings