Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 6.6e-268 926.8 464 100.0
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 2.7e-184 649.0 457 72.9
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.5e-105 386.7 469 48.2
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 2.5e-102 376.7 471 47.3
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 4.1e-100 369.4 466 44.0
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 5.3e-100 369.0 466 47.2
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 7.7e-99 365.2 469 45.4
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 1.7e-98 364.0 466 44.0
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 2.2e-98 363.6 464 44.0
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 5.0e-98 362.5 469 44.8
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 8.5e-98 361.7 468 43.8
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 8.5e-98 361.7 473 44.8
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.4e-97 360.9 465 45.2
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 1.9e-97 360.5 470 45.3
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 5.5e-97 359.0 468 44.0
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 7.2e-97 358.6 466 44.0
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.2e-96 357.8 465 44.1
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.2e-96 357.8 468 44.0
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 1.2e-96 357.8 464 43.5
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.6e-96 357.5 468 44.0
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.6e-96 357.5 469 45.0
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 2.1e-96 357.1 465 44.3
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.7e-96 356.7 475 46.1
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 2.7e-96 356.7 468 43.2
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 6.1e-96 355.5 471 44.4
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 7.9e-96 355.1 467 44.5
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 1.0e-95 354.8 466 43.8
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.4e-95 354.4 472 44.5
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.4e-95 354.4 467 44.5
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 3.9e-95 352.8 472 45.8
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 5.1e-95 352.4 468 43.6
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 6.7e-95 352.1 465 43.4
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 6.7e-95 352.1 468 43.6
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 8.8e-95 351.7 468 43.8
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 8.8e-95 351.7 466 42.9
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 1.5e-94 350.9 469 43.3
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 2.0e-94 350.5 471 43.9
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 2.0e-94 350.5 465 44.1
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 4.4e-94 349.4 462 44.4
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 4.4e-94 349.4 470 44.3
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 4.4e-94 349.4 468 43.6
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 9.7e-94 348.2 465 43.9
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.7e-93 347.4 465 44.1
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 1.7e-93 347.4 464 44.0
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 2.2e-93 347.1 463 42.5
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.8e-93 346.7 465 43.9
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.8e-93 346.7 467 43.7
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.7e-93 346.3 465 43.7
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 3.7e-93 346.3 476 44.1
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 4.8e-93 345.9 469 42.4
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 6.3e-93 345.5 472 43.6
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 6.3e-93 345.5 371 48.8
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 6.3e-93 345.5 470 43.8
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 8.2e-93 345.1 465 43.9
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 8.2e-93 345.1 468 43.2
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 1.1e-92 344.7 471 42.0
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 2.4e-92 343.6 465 43.7
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.1e-92 343.2 465 43.4
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 4.1e-92 342.8 470 44.0
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 7.0e-92 342.0 464 42.9
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 9.1e-92 341.7 464 43.3
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 9.1e-92 341.7 463 42.1
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 1.2e-91 341.3 471 42.7
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 1.2e-91 341.3 471 42.7
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 1.2e-91 341.3 469 44.6
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 1.2e-91 341.3 522 40.6
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 1.6e-91 340.9 471 44.8
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.9e-91 339.0 473 41.6
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.0e-90 338.2 469 41.8
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 1.0e-90 338.2 463 41.7
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 1.0e-90 338.2 466 42.7
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 1.3e-90 337.8 472 42.2
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 5.0e-90 335.9 472 41.7
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 8.5e-90 335.1 470 43.8
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 8.5e-90 335.1 467 43.3
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 1.1e-89 334.7 469 41.8
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.5e-89 334.3 469 41.8
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 2.5e-89 333.6 462 40.5
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 2.5e-89 333.6 462 40.9
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 2.5e-89 333.6 371 48.8
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 9.4e-89 331.6 469 41.4
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 1.6e-88 330.9 470 42.6
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 1.6e-88 330.9 467 42.0
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 2.3e-87 327.0 468 40.8
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 8.8e-87 325.1 464 43.1
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 1.1e-86 324.7 370 45.4
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 2.6e-86 323.6 471 41.2
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 2.6e-86 323.6 470 42.3
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 1.7e-85 320.9 472 40.9
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 2.2e-85 320.5 466 41.6
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 2.2e-85 320.5 466 41.4
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 6.3e-85 318.9 467 41.8
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 8.2e-85 318.5 467 41.3
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 1.4e-84 317.8 469 41.6
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 1.4e-84 317.8 392 44.4
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 1.8e-84 317.4 466 41.2
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 7.0e-84 315.5 466 41.8
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 4.5e-83 312.8 465 40.9
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 5.9e-83 312.4 470 39.6
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 1.3e-82 311.2 467 39.8
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 6.5e-82 308.9 467 40.0
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 1.1e-81 308.1 468 38.9
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 1.9e-81 307.4 375 44.8
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 2.5e-81 307.0 470 39.1
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 3.2e-81 306.6 469 40.1
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 2.1e-80 303.9 469 40.3
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 1.4e-79 301.2 522 36.0
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 2.8e-77 293.5 450 41.1
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 8.0e-72 275.4 467 38.3
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 2.0e-70 270.8 475 37.3
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 3.7e-69 266.5 469 37.7
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 3.5e-67 260.0 465 35.7
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 4.7e-64 249.6 471 39.3
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 4.7e-64 249.6 428 38.1
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.4e-63 248.1 407 38.1
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 1.2e-62 245.0 285 45.3
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 2.0e-62 244.2 372 36.6
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 3.4e-62 243.4 327 42.2
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 2.2e-61 240.7 419 36.8
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 2.9e-61 240.4 285 45.6
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 1.1e-60 238.4 285 44.2
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 2.3e-58 230.7 264 44.7
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 3.1e-55 220.3 370 35.7
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 2.0e-54 217.6 478 35.8
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 1.7e-53 214.5 251 53.0
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 6.4e-53 212.6 349 36.7
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 1.9e-52 211.1 533 33.2
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 9.2e-52 208.8 391 35.5
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 3.9e-50 203.4 598 31.1
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 7.3e-49 199.1 377 34.7
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.4e-47 194.9 458 31.7
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 2.6e-46 190.7 252 40.5
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 7.5e-46 189.1 474 31.6
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 8.3e-45 185.7 413 31.7
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 1.1e-44 185.3 185 50.8
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 7.1e-44 182.6 294 36.1
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 1.2e-43 181.8 181 49.2
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 6.0e-43 179.5 158 57.6
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 1.9e-41 174.5 495 30.9
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 5.6e-41 172.9 424 32.3
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 5.6e-41 172.9 446 30.3
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 7.3e-41 172.6 493 30.6
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 2.1e-40 171.0 561 27.8
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 1.5e-38 164.9 345 37.7
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 9.2e-36 155.6 250 36.0
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 1.6e-35 154.8 296 38.5
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 3.5e-35 153.7 171 45.6
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.5e-33 147.5 275 36.0
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.9e-28 131.3 222 40.5
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 1.0e-26 125.6 254 34.6
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 9.6e-25 119.0 210 39.0
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 2.4e-23 114.4 137 44.5
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 2.0e-22 111.3 173 44.5
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 9.9e-22 109.0 95 51.6
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 2.9e-21 107.5 189 35.4
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 6.4e-21 106.3 123 43.9
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 8.4e-21 105.9 107 48.6
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 1.9e-20 104.8 92 53.3
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 6.7e-18 96.3 116 44.0
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.9e-17 94.7 124 46.8
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 6.9e-15 86.3 139 42.4
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 2.0e-14 84.7 138 42.0
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 5.5e-12 76.6 239 26.4
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 8.7e-10 69.3 59 50.8
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 7.4e-09 66.2 117 42.7
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 7.4e-09 66.2 133 37.6
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.0e-06 58.2 72 45.8


User provided reference genes

Program Settings