Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 6.6e-119 430.6 206 100.0
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 8.7e-95 350.5 206 79.6
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 5.1e-79 298.1 199 69.3
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 8.2e-77 290.8 193 66.3
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 8.2e-77 290.8 193 66.3
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.1e-76 290.4 196 65.3
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 3.4e-75 285.4 201 64.7
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 4.5e-75 285.0 196 66.3
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.0e-74 283.9 193 64.8
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 1.7e-74 283.1 194 64.9
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 2.2e-74 282.7 198 62.6
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 6.5e-74 281.2 192 66.7
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 1.1e-73 280.4 193 64.2
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 1.4e-73 280.0 195 63.6
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 2.5e-73 279.3 199 63.8
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 2.5e-73 279.3 203 62.1
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 3.2e-73 278.9 200 64.5
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 2.7e-72 275.8 211 60.2
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 4.6e-72 275.0 193 64.8
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 6.1e-72 274.6 193 62.2
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 7.9e-72 274.2 196 64.8
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 1.0e-71 273.9 197 63.5
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 2.3e-71 272.7 193 62.2
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 3.0e-71 272.3 196 62.2
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 3.0e-71 272.3 193 61.1
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 5.1e-71 271.6 195 62.1
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 6.7e-71 271.2 197 62.9
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 6.7e-71 271.2 197 62.9
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 8.7e-71 270.8 196 61.7
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 1.1e-70 270.4 194 62.4
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 2.5e-70 269.2 207 61.8
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 2.5e-70 269.2 191 63.4
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 2.5e-70 269.2 191 63.4
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 7.4e-70 267.7 198 63.1
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 7.4e-70 267.7 192 61.5
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 9.7e-70 267.3 191 63.4
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 9.7e-70 267.3 194 61.3
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 2.2e-69 266.2 197 60.9
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 2.2e-69 266.2 203 60.6
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 2.2e-69 266.2 194 60.8
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 3.7e-69 265.4 193 62.7
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 4.8e-69 265.0 193 60.6
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 6.3e-69 264.6 192 62.5
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 8.2e-69 264.2 196 62.8
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 8.2e-69 264.2 195 60.5
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 1.1e-68 263.8 195 61.0
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 1.4e-68 263.5 195 61.5
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 1.8e-68 263.1 198 59.6
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 1.8e-68 263.1 195 62.6
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 4.1e-68 261.9 190 60.0
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 5.3e-68 261.5 192 62.0
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 9.1e-68 260.8 179 67.0
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 1.2e-67 260.4 195 60.0
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 1.5e-67 260.0 195 58.5
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 1.5e-67 260.0 195 58.5
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 1.5e-67 260.0 176 67.6
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 2.0e-67 259.6 203 60.6
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 2.0e-67 259.6 193 62.7
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 2.6e-67 259.2 195 59.5
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 4.5e-67 258.5 192 59.4
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 5.9e-67 258.1 195 57.9
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 1.0e-66 257.3 193 59.1
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 1.0e-66 257.3 193 58.0
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 1.3e-66 256.9 195 57.4
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 1.3e-66 256.9 192 60.9
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 1.7e-66 256.5 194 58.2
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 2.2e-66 256.1 180 65.0
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 3.8e-66 255.4 194 58.8
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 6.5e-66 254.6 195 56.9
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 6.5e-66 254.6 193 58.0
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 6.5e-66 254.6 198 57.6
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 1.1e-65 253.8 193 59.1
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 1.4e-65 253.4 193 58.0
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 1.9e-65 253.1 189 59.8
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 7.2e-65 251.1 163 69.3
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 3.6e-64 248.8 169 65.1
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 2.3e-63 246.1 197 56.9
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 2.6e-62 242.7 197 56.9
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 3.3e-62 242.3 201 56.2
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 2.8e-61 239.2 162 67.9
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 8.2e-61 237.7 169 63.3
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 1.8e-60 236.5 193 57.0
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 4.1e-60 235.3 199 56.8
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 4.1e-60 235.3 162 66.0
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 5.9e-59 231.5 167 62.9
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 3.8e-58 228.8 191 54.5
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 2.7e-56 222.6 199 54.3
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 3.6e-56 222.2 156 64.7
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.6e-56 222.2 166 62.0
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.8e-55 219.9 194 51.5
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 3.0e-55 219.2 198 52.0
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 1.1e-52 210.7 167 58.1
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 4.1e-52 208.8 217 45.6
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 4.1e-52 208.8 193 54.4
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 1.2e-51 207.2 195 52.3
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 4.5e-51 205.3 163 58.3
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 1.7e-50 203.4 195 46.7
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 6.1e-48 194.9 193 45.6
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 8.8e-47 191.0 195 49.7
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 2.8e-45 186.0 206 48.5
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 8.2e-45 184.5 132 59.1
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 3.1e-44 182.6 133 60.2
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 3.1e-44 182.6 133 60.2
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 1.2e-40 170.6 173 49.1
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 2.1e-40 169.9 111 65.8
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 1.8e-36 156.8 221 38.5
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.0e-31 141.0 92 67.4
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 7.5e-30 134.8 111 55.0
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 1.4e-28 130.6 89 65.2
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 1.0e-26 124.4 179 40.2
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 1.7e-26 123.6 154 42.9
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 8.6e-26 121.3 92 60.9
ATR0757G161 Amborella trichopoda HOM05D000026 ORTHO05D008596 4.0e-23 112.5 75 70.7
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 2.7e-19 99.8 68 67.6
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 3.9e-18 95.9 71 60.6
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 6.6e-18 95.1 229 30.1
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 1.9e-17 93.6 57 73.7
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 4.3e-17 92.4 144 34.0
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 6.4e-13 78.6 63 61.9
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 4.1e-12 75.9 53 67.9
Haze_15680 Corylus avellana HOM05D000026 ORTHO05D008596 7.3e-09 65.1 41 68.3


User provided reference genes

Program Settings