Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 2137.8 1073 100.0
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1739.9 1065 81.6
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1388.2 1081 65.4
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1386.7 1087 64.7
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1386.7 1076 65.4
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1380.9 1068 65.5
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1376.7 1090 64.4
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1375.1 1087 64.2
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1373.6 1090 64.2
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1370.9 1073 64.8
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1368.6 1096 64.1
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1362.4 1080 64.0
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1360.9 1076 63.7
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1360.5 1077 63.2
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1358.6 1080 64.0
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1357.4 1090 63.5
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1354.0 1094 63.4
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1354.0 1084 64.0
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1353.2 1092 63.9
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1352.8 1081 64.1
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1351.7 1074 63.6
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1349.7 1080 63.3
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1346.3 1080 63.4
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1345.5 1088 62.8
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1345.5 1083 63.4
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1345.1 1110 62.1
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1344.7 1075 63.7
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1343.6 1091 63.4
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1343.2 1076 63.7
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1340.1 1080 63.7
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1339.7 1108 62.1
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1337.8 1082 63.7
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1335.9 1083 63.3
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1335.5 1079 63.0
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1334.3 1080 63.1
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1332.4 1081 62.8
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1331.6 1087 62.3
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1331.6 1081 63.2
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1326.2 1084 62.7
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1326.2 1086 62.5
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1324.7 1066 63.4
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1323.5 1071 63.2
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1322.4 1090 62.9
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1322.0 1078 62.5
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1320.8 1093 62.5
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1320.8 1076 63.0
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1320.1 1062 63.5
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1317.8 1072 63.2
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1314.7 1078 62.2
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1313.9 1071 62.6
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1313.1 1080 62.7
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1312.7 1073 62.6
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1312.0 1085 62.5
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1311.2 1075 62.9
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1311.2 1075 62.9
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1310.4 1071 62.6
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1310.4 1088 62.4
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1309.3 1078 62.6
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1308.1 1064 62.4
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1307.7 1073 62.7
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1307.0 1095 61.6
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1305.4 1115 61.1
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1304.3 1076 62.3
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1298.1 1088 61.8
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1297.7 1081 62.3
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1295.8 1073 62.4
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1294.6 1074 61.7
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1294.3 1075 62.4
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1294.3 1084 61.1
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1294.3 1082 61.5
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1293.9 1064 61.8
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1291.2 1083 61.7
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1289.6 1078 61.8
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1286.6 1079 61.4
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1283.9 1065 62.4
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1283.5 1083 60.6
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1273.5 1071 61.3
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1271.9 1077 61.0
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1265.8 1080 60.9
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1264.2 1083 60.7
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1254.2 1077 60.9
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1247.3 1076 60.7
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1240.3 950 65.5
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1238.4 1066 60.9
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1230.3 1063 61.1
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1224.9 1076 59.2
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1215.7 946 64.5
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1203.3 1213 54.2
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1201.8 1119 57.6
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1164.4 957 62.3
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1094.0 1053 54.7
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1079.7 1207 49.9
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 1.9e-289 999.6 757 65.8
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 4.7e-285 984.9 1070 49.1
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 6.8e-284 981.1 757 64.3
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 3.2e-281 972.2 969 54.6
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 2.5e-270 936.0 758 61.7
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 5.6e-270 934.9 1073 50.4
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 3.4e-267 925.6 1054 48.7
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 7.1e-249 864.8 722 61.2
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.8e-228 797.0 716 57.3
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 2.9e-226 789.6 1007 44.4
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 4.8e-213 745.7 1018 44.7
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 8.0e-208 728.4 617 59.5
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 1.4e-191 674.5 536 63.6
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 1.1e-180 638.3 1479 31.4
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 3.6e-176 623.2 516 62.2
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 8.1e-168 595.5 645 51.6
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 1.5e-145 521.5 393 67.7
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 3.4e-110 404.1 333 63.4
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 1.2e-75 289.3 204 67.2
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 4.6e-46 191.0 152 61.2
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 2.9e-24 118.6 98 64.3
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.0e-21 110.2 59 81.4
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 1.5e-17 96.3 54 79.6
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 1.8e-13 82.8 64 57.8
SEGI_36326 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.4e-10 73.2 92 43.5
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 1.8e-10 72.8 212 28.3
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.5e-07 62.4 44 56.8
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.5e-07 62.4 44 56.8
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 3.6e-06 58.5 79 40.5


User provided reference genes

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