Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 2741.8 1332 100.0
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1239.2 1409 47.8
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1234.6 1393 47.6
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1230.3 1409 47.8
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1194.1 1385 47.9
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1193.7 1410 47.7
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1184.9 1419 46.4
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1166.4 1358 47.3
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1166.0 1388 46.6
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1161.0 1377 46.3
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1156.0 1380 46.2
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1151.0 1406 45.7
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1150.2 1396 45.5
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1144.4 1415 45.8
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1143.6 1405 45.6
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1142.5 1421 45.5
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1141.3 1368 46.0
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1140.2 1394 45.8
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1138.6 1386 46.2
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1138.3 1401 46.0
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1138.3 1399 44.2
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1133.6 1379 45.9
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1132.1 1410 45.4
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1132.1 1388 44.6
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1130.2 1388 45.7
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1126.7 1390 45.8
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1125.5 1392 45.3
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1124.4 1400 45.9
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1122.5 1402 45.4
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1120.9 1393 45.1
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1119.8 1401 45.0
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1119.4 1398 45.1
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1118.2 1383 45.0
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1117.1 1394 45.1
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1115.9 1445 43.7
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1115.5 1403 44.2
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1111.7 1490 43.2
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1110.5 1455 43.7
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1109.7 1342 46.2
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1107.8 1340 45.4
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1107.8 1341 45.2
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1107.4 1341 45.4
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1107.0 1397 44.5
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1105.5 1352 45.0
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1105.5 1396 44.7
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1104.4 1393 44.6
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1102.8 1339 45.3
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1101.7 1388 44.6
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1099.0 1382 44.8
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1097.4 1365 44.8
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1096.6 1354 45.4
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1095.5 1409 44.3
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1095.1 1425 44.2
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1090.9 1360 44.8
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1087.8 1382 44.3
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1087.4 1345 44.9
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1086.6 1355 45.0
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1085.5 1354 44.7
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1083.2 1410 43.9
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1081.2 1409 43.9
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1079.7 1349 44.3
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1078.5 1337 45.2
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1077.8 1385 43.7
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 6.4e-311 1071.2 1384 43.8
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 8.2e-311 1070.8 1355 44.3
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 3.1e-310 1068.9 1473 42.0
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 9.0e-310 1067.4 1344 43.2
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 4.2e-307 1058.5 1324 45.5
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 5.5e-307 1058.1 1394 43.6
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 7.1e-307 1057.7 1387 43.5
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 6.2e-303 1044.6 1347 45.0
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 5.3e-302 1041.6 1423 42.6
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 2.5e-299 1032.7 758 69.1
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.6e-295 1020.0 1460 41.2
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 1.3e-292 1010.4 1150 47.0
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 1.4e-291 1006.9 1349 42.9
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 4.6e-290 1001.9 1177 45.7
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 2.0e-288 996.5 1379 42.6
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 1.7e-279 966.8 1362 41.9
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 3.5e-277 959.1 1172 45.9
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 2.3e-273 946.4 1372 42.0
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 2.2e-260 903.3 1085 46.2
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 2.9e-247 859.8 1030 45.5
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 6.3e-247 858.6 1055 45.3
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 6.3e-247 858.6 964 47.0
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 1.8e-246 857.1 1056 45.3
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 1.1e-227 794.7 973 45.3
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 6.0e-221 772.3 1478 36.4
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 3.3e-219 766.5 1499 35.1
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 2.6e-216 756.9 1389 35.4
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 4.0e-209 733.0 959 44.8
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 1.1e-203 714.9 1482 33.3
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 2.8e-194 683.7 726 48.8
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 6.9e-185 652.5 869 42.9
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 1.1e-161 575.5 821 41.3
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 2.5e-158 564.3 749 43.4
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 7.2e-158 562.8 1191 34.5
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.0e-152 544.7 778 39.8
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 8.5e-151 539.3 1307 30.7
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 1.0e-148 532.3 608 46.1
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 6.5e-143 513.1 591 46.9
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 2.2e-138 498.0 589 45.5
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 6.3e-138 496.5 889 36.4
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 7.8e-128 463.0 582 44.0
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 4.9e-122 443.7 651 41.0
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.7e-104 384.8 596 40.6
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 2.1e-80 305.4 364 47.8
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 2.0e-75 288.9 399 41.9
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-70 272.3 350 44.0
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 7.4e-70 270.4 1585 23.8
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 5.9e-67 260.8 318 45.0
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 3.8e-66 258.1 1339 23.3
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.1e-65 256.5 312 45.8
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.7e-53 216.1 299 42.8
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 3.3e-46 191.8 329 37.1
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 4.8e-45 188.0 263 41.4
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 2.9e-42 178.7 259 41.7
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 1.6e-40 172.9 204 45.6
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-39 170.2 626 24.6
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 1.5e-38 166.4 183 45.4
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 2.2e-37 162.5 257 39.3
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 6.3e-37 161.0 233 43.8
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 1.1e-36 160.2 194 45.9
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 6.5e-34 151.0 212 40.6
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 1.5e-33 149.8 179 46.9
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 6.3e-29 134.4 77 84.4
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.5e-27 128.6 159 40.9
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 1.2e-24 120.2 93 59.1
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 2.1e-24 119.4 164 43.9
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 1.0e-23 117.1 171 39.8
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 2.0e-22 112.8 239 30.5
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 2.6e-22 112.5 108 49.1
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 1.6e-19 103.2 75 57.3
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 5.9e-19 101.3 90 52.2
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 8.6e-18 97.4 140 41.4
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 8.6e-18 97.4 155 35.5
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 4.7e-16 91.7 105 43.8
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 1.5e-14 86.7 109 42.2
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 7.5e-14 84.3 116 37.9
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.6e-11 75.1 46 73.9
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.6e-11 75.1 46 73.9
Cfa027171 Carpinus fangiana HOM05D004810 ORTHO05D125797 3.9e-10 72.0 418 24.6
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 6.6e-10 71.2 46 71.7
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 8.6e-10 70.9 46 71.7
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.1e-09 70.5 47 72.3
Cre04.g217991 Chlamydomonas reinhardtii HOM05D004810 ORTHO05D006272 2.8e-08 65.9 182 29.1
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 6.2e-08 64.7 84 38.1
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 6.2e-08 64.7 50 62.0
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-07 63.9 44 59.1
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 8.9e-07 60.8 43 67.4
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 7.5e-06 57.8 64 42.2


User provided reference genes

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