Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0109900 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D030339 0.0e+00 1115.1 543 100.0
Os03g0846400 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 3.9e-126 456.1 566 48.2
Os12g0141600 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 3.1e-99 366.7 507 43.6
Os11g0147200 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 1.9e-88 330.9 546 41.0
Os01g0776500 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 2.6e-82 310.5 310 54.2
Os07g0665700 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 5.9e-82 309.3 597 38.4
Os06g0142000 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D030339 5.9e-58 229.6 250 48.8
Os09g0436400 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 1.6e-42 178.3 274 42.7
Os07g0665300 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 1.3e-41 175.3 193 54.4
Zm00001eb408910 Zea mays HOM05D013536 ORTHO05D018072 4.5e-34 150.2 319 35.1
Os09g0436700 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 1.0e-30 139.0 201 39.3
Os01g0278600 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 8.3e-28 129.4 214 35.5
Zm00001eb065050 Zea mays HOM05D013536 ORTHO05D030339 2.1e-23 114.8 113 49.6
Lj9A35T20 Lonicera japonica HOM05D006716 ORTHO05D008396 4.0e-22 110.5 249 32.5
vmacro12393 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 1.3e-20 105.5 210 33.3
Duzib114G0358 Durio zibethinus HOM05D006716 ORTHO05D008396 2.2e-20 104.8 243 32.5
CSS0050127 Camellia sinensis var. sinensis HOM05D006716 ORTHO05D008396 3.7e-20 104.0 236 31.4
Os09g0436300 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 6.4e-20 103.2 203 35.5
Ah.08g210040 Amaranthus hybridus HOM05D006716 ORTHO05D008396 1.2e-18 99.0 212 34.4
vmacro12389 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 1.6e-18 98.6 252 28.2
Duzib114G0774 Durio zibethinus HOM05D006716 ORTHO05D008396 2.7e-18 97.8 212 30.7
vmacro15746 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 3.5e-18 97.4 197 31.5
Solyc02g082720.4 Solanum lycopersicum HOM05D006716 ORTHO05D008396 6.0e-18 96.7 205 33.2
TWI31G0239 Tripterygium wilfordii HOM05D006716 ORTHO05D008396 1.0e-17 95.9 211 31.8
SGA_v2.0_scaffold57G20303 Striga asiatica HOM05D006716 ORTHO05D008396 2.3e-17 94.7 249 30.5
Sopen02g027470 Solanum pennellii HOM05D006716 ORTHO05D008396 3.9e-17 94.0 206 32.0
Duzib114G0950 Durio zibethinus HOM05D006716 ORTHO05D008396 5.0e-17 93.6 212 31.1
Hma1.2p1_0154F.1_g068000 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 5.0e-17 93.6 240 29.6
TPR.G40231 Trifolium pratense HOM05D006716 ORTHO05D008396 2.5e-16 91.3 213 31.5
Peaxi162Scf00475g00124 Petunia axillaris HOM05D006716 ORTHO05D008396 3.3e-16 90.9 269 27.5
TPR.G29566 Trifolium pratense HOM05D006716 ORTHO05D008396 9.5e-16 89.4 254 28.3
Duzib114G0505 Durio zibethinus HOM05D006716 ORTHO05D008396 1.2e-15 89.0 213 29.6
Aqoxy4G01949 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 1.6e-15 88.6 253 29.2
Rhsim02G0098700 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.6e-15 88.6 217 33.2
PSO478G4756 Papaver somniferum HOM05D006716 ORTHO05D008396 2.1e-15 88.2 240 27.9
Hma1.2p1_0310F.1_g120920 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 3.6e-15 87.4 215 32.1
SGA_v2.0_scaffold50G18515 Striga asiatica HOM05D006716 ORTHO05D008396 3.6e-15 87.4 231 29.9
Hma1.2p1_0003F.1_g003620 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 4.7e-15 87.0 230 30.0
Aqoxy4G01948 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 6.2e-15 86.7 215 31.6
Peaxi162Scf00168g01523 Petunia axillaris HOM05D006716 ORTHO05D008396 1.8e-14 85.1 189 31.7
Sopen02g027280 Solanum pennellii HOM05D006716 ORTHO05D008396 1.8e-14 85.1 205 30.2
vmacro12392 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 2.3e-14 84.7 186 30.6
vmacro15747 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 5.2e-14 83.6 243 26.7
vmacro15749 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 5.2e-14 83.6 232 30.6
TPR.G36640 Trifolium pratense HOM05D006716 ORTHO05D008396 6.8e-14 83.2 213 29.1
TPR.G15037 Trifolium pratense HOM05D006716 ORTHO05D008396 8.9e-14 82.8 214 28.0
DCAR_002644 Daucus carota HOM05D006716 ORTHO05D008396 1.5e-13 82.0 194 35.1
Peaxi162Scf00663g00009 Petunia axillaris HOM05D006716 ORTHO05D008396 1.5e-13 82.0 211 29.9
Rhsim02G0098800 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.5e-13 82.0 265 29.1
Manes.S095408 Manihot esculenta HOM05D006716 ORTHO05D008396 2.0e-13 81.6 213 30.0
Potri.018G001301 Populus trichocarpa HOM05D006716 ORTHO05D008396 2.0e-13 81.6 231 31.6
Nitab4.5_0001339g0090 Nicotiana tabacum HOM05D006716 ORTHO05D008396 4.4e-13 80.5 207 30.0
Nitab4.5_0007530g0040 Nicotiana tabacum HOM05D006716 ORTHO05D008396 2.2e-12 78.2 206 28.6
Zm00001eb065040 Zea mays HOM05D013536 ORTHO05D445124 2.9e-12 77.8 96 47.9
CAN.G1238.8 Capsicum annuum HOM05D006716 ORTHO05D008396 2.4e-11 74.7 178 30.3
Peaxi162Scf00663g00027 Petunia axillaris HOM05D006716 ORTHO05D008396 3.2e-11 74.3 198 28.3
PSO478G1238 Papaver somniferum HOM05D006716 ORTHO05D008396 5.4e-11 73.6 242 27.3
DCAR_004702 Daucus carota HOM05D012205 ORTHO05D014781 7.1e-11 73.2 170 30.6
Rhsim09G0048400 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.2e-10 72.4 161 31.1
Lj9A35T22 Lonicera japonica HOM05D006716 ORTHO05D008396 1.6e-10 72.0 262 26.3
Rhsim07G0026700 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.6e-10 72.0 238 29.0
CAN.G497.65 Capsicum annuum HOM05D006716 ORTHO05D008396 2.7e-10 71.2 213 30.0
Solyc02g082590.3 Solanum lycopersicum HOM05D006716 ORTHO05D008396 4.6e-10 70.5 98 35.7
Ah.10g035360 Amaranthus hybridus HOM05D006716 ORTHO05D008396 1.0e-09 69.3 148 31.1
Potri.018G001500 Populus trichocarpa HOM05D006716 ORTHO05D008396 5.1e-09 67.0 285 26.7
DCAR_001924 Daucus carota HOM05D006716 ORTHO05D008396 1.9e-08 65.1 95 34.7
SGA_v2.0_scaffold57G20300 Striga asiatica HOM05D006716 ORTHO05D008396 2.5e-08 64.7 215 28.4
Peaxi162Scf00226g00715 Petunia axillaris HOM05D006716 ORTHO05D008396 3.3e-08 64.3 191 27.2
DCAR_016243 Daucus carota HOM05D012205 ORTHO05D014781 4.3e-08 63.9 178 28.1
DCAR_019182 Daucus carota HOM05D012205 ORTHO05D014781 5.6e-08 63.5 174 29.3
DCAR_001902 Daucus carota HOM05D006716 ORTHO05D008396 7.3e-08 63.2 194 25.8
PSO017G6103 Papaver somniferum HOM05D006716 ORTHO05D008396 7.3e-08 63.2 86 34.9
Ah.10g035300 Amaranthus hybridus HOM05D006716 ORTHO05D008396 9.5e-08 62.8 148 30.4
DCAR_015677 Daucus carota HOM05D012205 ORTHO05D014781 9.5e-08 62.8 180 28.3
Os05g0158200 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D298992 1.2e-07 62.4 195 28.2
Peaxi162Scf00226g00717 Petunia axillaris HOM05D006716 ORTHO05D008396 1.2e-07 62.4 177 29.4
Potri.018G001550 Populus trichocarpa HOM05D006716 ORTHO05D008396 1.2e-07 62.4 218 25.7
CAN.G497.60 Capsicum annuum HOM05D006716 ORTHO05D008396 2.1e-07 61.6 196 29.1
AUR62029714 Chenopodium quinoa HOM05D012205 ORTHO05D014781 2.8e-07 61.2 172 30.8
DCAR_026566 Daucus carota HOM05D012205 ORTHO05D014781 2.8e-07 61.2 174 29.3
EL10Ac7g17971 Beta vulgaris HOM05D012205 ORTHO05D014781 3.6e-07 60.8 198 28.8
Peaxi162Scf00475g00024 Petunia axillaris HOM05D006716 ORTHO05D008396 3.6e-07 60.8 91 36.3
Peaxi162Scf00226g00716 Petunia axillaris HOM05D006716 ORTHO05D008396 6.2e-07 60.1 91 33.0
Ca_24998_v3 Cicer arietinum L. HOM05D006716 ORTHO05D008396 3.1e-06 57.8 147 29.3


User provided reference genes

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