Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 8.6e-142 506.9 245 100.0
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 5.8e-130 467.6 226 100.0
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 2.7e-95 352.4 223 75.3
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 3.1e-67 259.2 224 56.2
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 4.2e-64 248.8 215 54.9
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 1.8e-62 243.4 213 54.0
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 2.3e-62 243.0 213 54.9
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 3.0e-62 242.7 213 54.5
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 3.0e-62 242.7 215 52.6
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 6.8e-62 241.5 213 53.5
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 6.8e-62 241.5 214 52.8
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 6.8e-62 241.5 215 54.4
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 1.2e-61 240.7 213 54.0
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 2.6e-61 239.6 213 54.5
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 4.4e-61 238.8 213 52.6
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 7.5e-61 238.0 212 55.2
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 9.8e-61 237.7 215 53.5
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 1.3e-60 237.3 214 54.2
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 1.3e-60 237.3 214 52.3
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 2.2e-60 236.5 216 54.2
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 2.2e-60 236.5 212 52.4
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 2.2e-60 236.5 215 51.2
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 2.2e-60 236.5 215 51.2
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 2.8e-60 236.1 214 52.3
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 3.7e-60 235.7 212 52.4
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 4.8e-60 235.3 214 50.0
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 4.8e-60 235.3 215 51.6
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 6.3e-60 235.0 212 52.4
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 6.3e-60 235.0 212 52.4
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 1.1e-59 234.2 216 53.7
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 1.1e-59 234.2 216 53.2
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 1.4e-59 233.8 215 49.3
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 1.4e-59 233.8 214 50.9
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 3.1e-59 232.6 215 49.8
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 4.1e-59 232.3 215 50.7
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 7.0e-59 231.5 215 51.2
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 7.0e-59 231.5 216 53.2
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 7.0e-59 231.5 216 53.2
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 9.1e-59 231.1 212 51.9
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 9.1e-59 231.1 217 51.2
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 9.1e-59 231.1 217 49.8
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 1.2e-58 230.7 213 51.2
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 1.6e-58 230.3 214 49.5
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 1.6e-58 230.3 213 51.6
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 2.0e-58 229.9 215 49.3
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 2.7e-58 229.6 216 52.8
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 3.5e-58 229.2 212 50.0
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 3.5e-58 229.2 214 50.0
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 4.5e-58 228.8 212 52.4
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 4.5e-58 228.8 213 51.2
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 5.9e-58 228.4 211 51.7
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 7.7e-58 228.0 212 51.9
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 7.7e-58 228.0 215 50.7
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 1.0e-57 227.6 212 51.9
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 1.0e-57 227.6 216 52.3
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 1.3e-57 227.3 215 49.8
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 1.3e-57 227.3 213 50.7
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 3.8e-57 225.7 214 50.5
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 3.8e-57 225.7 214 51.4
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 3.8e-57 225.7 214 49.5
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 3.8e-57 225.7 208 50.5
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 1.5e-56 223.8 214 50.0
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 1.5e-56 223.8 214 50.0
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 1.5e-56 223.8 213 49.3
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 2.5e-56 223.0 227 47.1
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 3.2e-56 222.6 214 50.0
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 3.2e-56 222.6 213 49.3
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 4.2e-56 222.2 215 49.3
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 7.2e-56 221.5 215 49.3
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 9.5e-56 221.1 212 50.5
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 1.2e-55 220.7 218 49.5
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 4.7e-55 218.8 195 54.9
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 6.1e-55 218.4 215 47.0
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 1.8e-54 216.9 213 50.7
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 2.3e-54 216.5 219 47.9
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 4.0e-54 215.7 207 48.3
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 4.0e-54 215.7 216 47.2
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 2.0e-53 213.4 216 48.1
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 2.6e-53 213.0 217 48.8
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 1.7e-52 210.3 213 47.9
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 7.0e-51 204.9 184 52.2
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 7.0e-51 204.9 188 53.2
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 5.9e-50 201.8 214 44.4
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 5.9e-50 201.8 196 49.0
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 7.8e-50 201.4 199 49.2
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 3.3e-48 196.1 178 51.1
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 3.3e-48 196.1 192 47.9
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 9.5e-48 194.5 196 49.5
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 8.3e-44 181.4 175 49.1
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 2.4e-43 179.9 224 43.3
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 9.2e-43 177.9 171 50.9
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 4.6e-42 175.6 171 50.3
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 5.0e-41 172.2 226 42.0
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 8.0e-39 164.9 126 58.7
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 1.1e-38 164.5 171 46.2
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 1.4e-38 164.1 124 59.7
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 1.4e-38 164.1 160 47.5
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 4.9e-36 155.6 164 45.7
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 1.9e-32 143.7 155 46.5
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 3.3e-32 142.9 167 41.3
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 7.3e-32 141.7 159 44.0
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 4.7e-31 139.0 251 34.7
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 2.2e-28 130.2 201 36.3
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 4.9e-28 129.0 157 40.1
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 1.4e-27 127.5 160 41.9
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 2.7e-26 123.2 184 36.4
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 1.4e-22 110.9 261 28.0
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 1.4e-22 110.9 222 30.6
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 2.6e-21 106.7 174 35.6
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 3.4e-21 106.3 109 45.9
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 5.8e-21 105.5 109 45.9
Cpa.g.sc6.336 Carica papaya HOM05D007035 ORTHO05D008774 2.8e-15 86.7 59 62.7
Peaxi162Scf00300g00119 Petunia axillaris HOM05D007035 ORTHO05D008774 5.2e-14 82.4 61 55.7
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 1.2e-13 81.3 156 33.3
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 1.2e-13 81.3 107 38.3
CBR_g30366 Chara braunii HOM05D007035 ORTHO05D008774 4.0e-06 56.2 98 34.7


User provided reference genes

Program Settings