Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 2.9e-197 691.8 381 100.0
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 8.6e-165 583.9 356 85.4
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 6.9e-138 494.6 283 84.1
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 5.5e-135 485.0 284 83.5
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 2.7e-134 482.6 287 81.9
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 3.3e-132 475.7 277 82.3
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 7.4e-132 474.6 283 80.2
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 1.3e-131 473.8 284 79.2
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 2.1e-131 473.0 284 78.9
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 2.1e-131 473.0 279 81.7
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 4.8e-131 471.9 287 79.8
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 8.2e-131 471.1 282 80.1
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 8.2e-131 471.1 281 79.7
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 8.2e-131 471.1 281 79.7
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 1.4e-130 470.3 286 79.7
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 1.4e-130 470.3 282 80.5
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 2.4e-130 469.5 278 80.2
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 5.3e-130 468.4 286 79.7
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 6.9e-130 468.0 280 78.6
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 9.0e-130 467.6 287 78.0
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 2.6e-129 466.1 278 79.9
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 3.4e-129 465.7 279 79.6
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 4.5e-129 465.3 279 79.2
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 7.6e-129 464.5 281 78.3
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 1.0e-128 464.2 283 78.1
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 1.3e-128 463.8 282 79.1
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 1.7e-128 463.4 288 76.7
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 1.7e-128 463.4 279 79.6
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 2.9e-128 462.6 288 77.4
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 2.9e-128 462.6 279 78.5
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 2.9e-128 462.6 282 81.2
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 2.9e-128 462.6 283 80.9
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 4.9e-128 461.8 288 77.8
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 6.5e-128 461.5 279 78.9
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 8.4e-128 461.1 349 67.0
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 8.4e-128 461.1 288 77.4
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 8.4e-128 461.1 298 75.2
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 1.1e-127 460.7 275 80.0
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 1.1e-127 460.7 281 79.0
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 1.4e-127 460.3 285 77.5
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 2.5e-127 459.5 287 77.0
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 3.2e-127 459.1 283 78.8
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 5.5e-127 458.4 279 78.9
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 5.5e-127 458.4 282 78.4
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 7.1e-127 458.0 287 77.7
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 9.3e-127 457.6 290 75.2
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.6e-126 456.8 281 77.2
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 1.6e-126 456.8 278 78.8
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 2.1e-126 456.4 279 78.9
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 2.7e-126 456.1 287 76.7
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 1.3e-125 453.8 278 77.7
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 1.3e-125 453.8 278 77.7
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 3.0e-125 452.6 280 77.9
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 5.1e-125 451.8 280 77.9
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 5.1e-125 451.8 278 77.3
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 8.7e-125 451.1 279 78.1
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 8.7e-125 451.1 283 76.7
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 1.9e-124 449.9 278 77.3
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 2.5e-124 449.5 283 76.7
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 7.4e-124 448.0 278 77.0
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 1.6e-123 446.8 278 75.9
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 2.2e-123 446.4 286 73.8
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 2.8e-123 446.0 330 68.5
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 3.7e-123 445.7 278 76.3
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 3.7e-123 445.7 281 74.7
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 4.8e-123 445.3 277 76.5
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 6.3e-123 444.9 279 78.1
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 1.4e-122 443.7 278 75.9
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 1.8e-122 443.4 281 76.9
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 2.4e-122 443.0 278 75.5
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 2.4e-122 443.0 311 70.7
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 2.4e-122 443.0 278 74.8
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 4.1e-122 442.2 332 67.5
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 5.3e-122 441.8 278 75.9
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 9.0e-122 441.0 278 75.5
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.5e-121 440.3 278 75.5
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.5e-121 440.3 280 73.2
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 2.0e-121 439.9 276 75.7
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 2.0e-121 439.9 344 65.4
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 2.6e-121 439.5 276 76.1
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 2.6e-121 439.5 276 75.7
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 2.6e-121 439.5 276 75.7
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 3.4e-121 439.1 276 75.7
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 3.4e-121 439.1 332 66.9
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 4.5e-121 438.7 280 74.6
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 7.7e-121 438.0 281 73.0
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 1.0e-120 437.6 279 73.5
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 1.0e-120 437.6 276 75.4
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 1.3e-120 437.2 281 74.7
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 3.8e-120 435.6 276 75.4
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 5.0e-120 435.3 280 73.9
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 5.0e-120 435.3 280 73.9
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 5.0e-120 435.3 276 75.4
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 5.0e-120 435.3 280 74.3
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 6.5e-120 434.9 278 74.5
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 8.5e-120 434.5 280 73.9
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 8.5e-120 434.5 277 72.9
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 1.1e-119 434.1 277 73.3
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 1.1e-119 434.1 277 73.3
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 1.1e-119 434.1 277 73.3
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 1.1e-119 434.1 277 73.3
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.1e-119 434.1 281 71.9
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.9e-119 433.3 278 74.5
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 2.5e-119 433.0 273 73.6
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 5.5e-119 431.8 277 72.2
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 5.5e-119 431.8 281 71.5
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 7.2e-119 431.4 278 73.7
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 7.2e-119 431.4 278 73.7
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 2.7e-118 429.5 273 73.3
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 4.6e-118 428.7 278 73.4
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 6.1e-118 428.3 277 71.8
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 1.0e-117 427.6 276 74.6
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.4e-117 427.2 257 79.4
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 3.3e-116 422.5 271 73.8
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 1.7e-115 420.2 282 73.4
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 6.3e-115 418.3 279 72.8
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 1.8e-114 416.8 259 74.9
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 5.9e-113 411.8 278 72.3
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 1.5e-108 397.1 283 69.6
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.3e-108 396.0 318 64.5
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 5.7e-108 395.2 235 80.4
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 5.9e-105 385.2 243 75.7
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 1.4e-101 374.0 234 76.5
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 1.4e-101 374.0 330 58.2
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 2.0e-100 370.2 262 70.2
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 2.5e-95 353.2 212 78.8
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 5.5e-95 352.1 220 76.4
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 7.2e-87 325.1 203 78.3
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 1.8e-85 320.5 190 81.1
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 3.0e-85 319.7 282 53.5
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 1.3e-83 314.3 240 66.2
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 1.8e-82 310.5 272 54.8
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 1.7e-80 303.9 275 53.5
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 9.8e-76 288.1 181 79.0
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.7e-75 287.3 181 79.0
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 3.2e-74 283.1 228 62.7
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 3.3e-71 273.1 255 51.8
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.9e-66 257.3 205 64.9
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 3.9e-64 249.6 152 78.3
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 9.5e-63 245.0 166 72.9
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-55 221.5 137 74.5
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 1.1e-55 221.5 162 70.4
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 2.5e-55 220.3 130 77.7
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 7.3e-55 218.8 137 73.7
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 9.5e-55 218.4 137 73.7
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 2.7e-41 173.7 157 55.4
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 1.5e-39 167.9 123 65.0
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 7.3e-39 165.6 110 69.1
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 1.4e-37 161.4 111 66.7
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 3.6e-30 136.7 72 83.3
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 2.4e-29 134.0 72 80.6
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 4.0e-29 133.3 94 67.0
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 9.0e-29 132.1 75 80.0
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.8e-27 126.7 98 64.3
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 6.0e-25 119.4 62 82.3
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 6.0e-25 119.4 115 47.8
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 1.5e-23 114.8 157 40.1
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 6.2e-22 109.4 88 58.0
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 7.6e-20 102.4 53 90.6
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.3e-16 91.7 54 79.6
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 1.3e-16 91.7 61 68.9
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 6.7e-16 89.4 141 38.3
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 1.3e-14 85.1 57 68.4
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 4.8e-14 83.2 57 68.4
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 6.2e-14 82.8 53 69.8
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 8.4e-11 72.4 55 61.8
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 3.7e-06 57.0 28 92.9
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 3.7e-06 57.0 28 92.9
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 3.7e-06 57.0 28 92.9
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 8.2e-06 55.8 36 61.1


User provided reference genes

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