Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0830801 Oryza sativa ssp. japonica HOM05D003495 ORTHO05D004159 0.0e+00 1568.9 786 100.0
Zm00001eb190620 Zea mays HOM05D003495 ORTHO05D004159 0.0e+00 1424.5 758 94.2
Nn7g37976 Nelumbo nucifera HOM05D003495 ORTHO05D004159 0.0e+00 1239.9 759 81.2
PSO063G7059 Papaver somniferum HOM05D003495 ORTHO05D004159 0.0e+00 1224.9 761 80.2
Aqoxy5G03432 Aquilegia oxysepala HOM05D003495 ORTHO05D004159 0.0e+00 1214.5 760 79.7
TAR374G0385 Trochodendron aralioides HOM05D003495 ORTHO05D004159 0.0e+00 1207.6 787 77.4
GSVIVG01036514001 Vitis vinifera HOM05D003495 ORTHO05D004159 0.0e+00 1198.7 759 78.9
Nitab4.5_0002978g0060 Nicotiana tabacum HOM05D003495 ORTHO05D004159 0.0e+00 1198.3 759 78.7
Cc07_g04650 Coffea canephora HOM05D003495 ORTHO05D004159 0.0e+00 1198.0 759 78.3
Nitab4.5_0002171g0110 Nicotiana tabacum HOM05D003495 ORTHO05D004159 0.0e+00 1197.6 759 78.5
Thecc.02G251800 Theobroma cacao HOM05D003495 ORTHO05D004159 0.0e+00 1192.9 762 78.5
Manes.01G104801 Manihot esculenta HOM05D003495 ORTHO05D004159 0.0e+00 1192.2 759 78.0
Atru.chr8.588 Acer truncatum HOM05D003495 ORTHO05D004159 0.0e+00 1191.0 759 77.5
Actinidia18095 Actinidia chinensis HOM05D003495 ORTHO05D004159 0.0e+00 1190.6 759 78.0
ATR0618G126 Amborella trichopoda HOM05D003495 ORTHO05D004159 0.0e+00 1190.6 760 78.7
Gorai.005G181800 Gossypium raimondii HOM05D003495 ORTHO05D004159 0.0e+00 1190.3 759 78.0
CANSAT64G2734 Cannabis sativa HOM05D003495 ORTHO05D004159 0.0e+00 1189.9 759 77.9
Gohir.D02G161860 Gossypium hirsutum HOM05D003495 ORTHO05D004159 0.0e+00 1189.9 759 77.9
Gohir.A03G138900 Gossypium hirsutum HOM05D003495 ORTHO05D004159 0.0e+00 1188.3 759 77.9
Sopen02g034150 Solanum pennellii HOM05D003495 ORTHO05D004159 0.0e+00 1187.9 759 78.0
Solyc02g089370.2 Solanum lycopersicum HOM05D003495 ORTHO05D004159 0.0e+00 1187.6 759 78.0
CAN.G497.44 Capsicum annuum HOM05D003495 ORTHO05D004159 0.0e+00 1186.4 759 77.7
HPP92_025566 Vanilla planifolia HOM05D003495 ORTHO05D004159 0.0e+00 1184.5 757 78.3
Prupe.3G246500 Prunus persica HOM05D003495 ORTHO05D004159 0.0e+00 1184.1 759 77.9
CSS0005441 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 1183.7 759 77.9
CSS0018508 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 1183.7 759 77.9
Migut.K00878 Erythranthe guttata HOM05D003495 ORTHO05D004159 0.0e+00 1182.2 759 77.5
FAN14G1484 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1182.2 759 77.3
RcHm_v2.0_Chr2g0164371 Rosa chinensis HOM05D003495 ORTHO05D004159 0.0e+00 1182.2 762 77.4
FAN09G4792 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1181.8 759 77.1
CsaV3_5G038800 Cucumis sativus L. HOM05D003495 ORTHO05D004159 0.0e+00 1179.9 757 77.5
FvH4_6g46050 Fragaria vesca HOM05D003495 ORTHO05D004159 0.0e+00 1179.9 759 77.2
Oeu062191.1 Olea europaea HOM05D003495 ORTHO05D004159 0.0e+00 1179.9 759 77.6
TWI60G0296 Tripterygium wilfordii HOM05D003495 ORTHO05D004159 0.0e+00 1178.3 759 76.5
Cfa007716 Carpinus fangiana HOM05D003495 ORTHO05D004159 0.0e+00 1177.5 759 77.6
AUR62002798 Chenopodium quinoa HOM05D003495 ORTHO05D004159 0.0e+00 1176.8 759 77.1
PSO063G5616 Papaver somniferum HOM05D003495 ORTHO05D004159 0.0e+00 1176.4 759 77.5
THA.LOC104820987 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 0.0e+00 1176.4 759 76.7
MD09G1077600 Malus domestica HOM05D003495 ORTHO05D004159 0.0e+00 1176.0 759 77.6
AUR62014105 Chenopodium quinoa HOM05D003495 ORTHO05D004159 0.0e+00 1171.0 759 76.7
Thhalv10012410m.g Eutrema salsugineum HOM05D003495 ORTHO05D004159 0.0e+00 1168.7 759 75.8
MSTRG.3380 Avicennia marina HOM05D003495 ORTHO05D004159 0.0e+00 1167.9 759 77.1
MD17G1067900 Malus domestica HOM05D003495 ORTHO05D004159 0.0e+00 1167.9 760 77.2
CARHR197650 Cardamine hirsuta HOM05D003495 ORTHO05D004159 0.0e+00 1167.5 759 75.5
Ca_20758_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 0.0e+00 1166.8 759 76.9
Sopen03g010670 Solanum pennellii HOM05D003495 ORTHO05D004159 0.0e+00 1166.0 754 77.1
CSS0004216 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 1165.6 759 77.3
Duzib268G1709 Durio zibethinus HOM05D003495 ORTHO05D004159 0.0e+00 1165.6 759 76.4
Sed0015478 Sechium edule HOM05D003495 ORTHO05D004159 0.0e+00 1165.6 757 76.9
Ciclev10010888m.g Citrus clementina HOM05D003495 ORTHO05D004159 0.0e+00 1165.2 759 76.3
Medtr6g016215 Medicago truncatula HOM05D003495 ORTHO05D004159 0.0e+00 1164.4 759 76.7
Sp6g28440 Schrenkiella parvula HOM05D003495 ORTHO05D004159 0.0e+00 1164.4 759 75.6
SGA_v2.0_scaffold148G36460 Striga asiatica HOM05D003495 ORTHO05D004159 0.0e+00 1164.4 760 76.8
DCAR_011000 Daucus carota HOM05D003495 ORTHO05D004159 0.0e+00 1163.7 759 76.7
Duzib248G1077 Durio zibethinus HOM05D003495 ORTHO05D004159 0.0e+00 1162.9 759 76.0
EL10Ac6g14290 Beta vulgaris HOM05D003495 ORTHO05D004159 0.0e+00 1162.5 759 76.7
BcaC03g18444 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 1162.1 759 75.1
ECA232G2419 Erigeron canadensis HOM05D003495 ORTHO05D004159 0.0e+00 1162.1 759 77.1
Eucgr.I02084 Eucalyptus grandis HOM05D003495 ORTHO05D004159 0.0e+00 1161.4 759 76.2
Lj2g0019402 Lotus japonicus HOM05D003495 ORTHO05D004159 0.0e+00 1161.0 761 76.3
BcaNung02199 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 1160.2 759 75.0
THA.LOC104802983 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 0.0e+00 1158.3 759 75.9
arahy.Tifrunner.gnm1.ann1.BVET7T Arachis hypogaea HOM05D003495 ORTHO05D004159 0.0e+00 1157.5 761 76.3
Sed0005421 Sechium edule HOM05D003495 ORTHO05D004159 0.0e+00 1157.5 764 76.4
Lsat_1_v5_gn_4_173941 Lactuca sativa HOM05D003495 ORTHO05D004159 0.0e+00 1154.8 766 76.0
Aa31LG11G13890 Aethionema arabicum HOM05D003495 ORTHO05D004159 0.0e+00 1154.4 786 72.9
Carub.0006s1383 Capsella rubella HOM05D003495 ORTHO05D004159 0.0e+00 1154.4 759 74.8
Lalb_Chr02g0158651 Lupinus albus HOM05D003495 ORTHO05D004159 0.0e+00 1154.0 759 75.6
AT5G15680 Arabidopsis thaliana HOM05D003495 ORTHO05D004159 0.0e+00 1152.9 759 74.8
HanXRQChr15g0489851 Helianthus annuus HOM05D003495 ORTHO05D004159 0.0e+00 1152.1 759 76.4
arahy.Tifrunner.gnm1.ann1.AQF1TQ Arachis hypogaea HOM05D003495 ORTHO05D004159 0.0e+00 1151.7 768 75.8
ClCG11G005050 Citrullus lanatus HOM05D003495 ORTHO05D004159 0.0e+00 1151.7 757 76.4
Peaxi162Scf00020g02133 Petunia axillaris HOM05D003495 ORTHO05D004159 0.0e+00 1151.7 730 78.1
AL6G26520 Arabidopsis lyrata HOM05D003495 ORTHO05D004159 0.0e+00 1151.3 759 74.7
Hund25028 Selenicereus undatus HOM05D003495 ORTHO05D004159 0.0e+00 1151.0 759 75.6
Sc04g0005950 Simmondsia chinensis HOM05D003495 ORTHO05D004159 0.0e+00 1151.0 759 75.2
Peaxi162Scf00479g01011 Petunia axillaris HOM05D003495 ORTHO05D004159 0.0e+00 1150.2 794 73.9
CAN.G563.4 Capsicum annuum HOM05D003495 ORTHO05D004159 0.0e+00 1148.7 754 75.7
Glyma.19G037200 Glycine max HOM05D003495 ORTHO05D004159 0.0e+00 1148.7 763 76.3
Phvul.004G045000 Phaseolus vulgaris HOM05D003495 ORTHO05D004159 0.0e+00 1148.7 762 76.6
PGR004G1253 Punica granatum HOM05D003495 ORTHO05D004159 0.0e+00 1148.3 762 75.3
HanXRQChr15g0464911 Helianthus annuus HOM05D003495 ORTHO05D004159 0.0e+00 1144.4 759 75.5
Ah.02g128180 Amaranthus hybridus HOM05D003495 ORTHO05D004159 0.0e+00 1142.9 773 74.5
FAN02G1990 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1140.6 825 70.7
Glyma.11G061700 Glycine max HOM05D003495 ORTHO05D004159 0.0e+00 1135.6 760 75.8
FAN05G3267 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1131.3 827 70.1
VMungo0464G0617 Vigna mungo HOM05D003495 ORTHO05D004159 0.0e+00 1130.5 795 73.5
Potri.017G106100 Populus trichocarpa HOM05D003495 ORTHO05D004159 0.0e+00 1129.8 755 75.9
MELO3C022060.2 Cucumis melo HOM05D003495 ORTHO05D004159 0.0e+00 1127.5 762 75.2
Dinv33880 Davidia involucrata HOM05D003495 ORTHO05D004159 0.0e+00 1119.8 707 78.8
Hma1.2p1_0588F.1_g184640 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 0.0e+00 1115.5 930 64.2
BcaB01g05032 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 1108.2 762 71.7
Psat1g064160 Pisum sativum HOM05D003495 ORTHO05D004159 0.0e+00 1103.2 761 73.5
TPR.G15949 Trifolium pratense HOM05D003495 ORTHO05D004159 0.0e+00 1095.1 759 73.6
Dinv34893 Davidia involucrata HOM05D003495 ORTHO05D004159 0.0e+00 1094.3 708 77.0
TAR622G0597 Trochodendron aralioides HOM05D003495 ORTHO05D004159 0.0e+00 1087.0 762 73.1
Solyc03g046450.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 1.8e-310 1068.9 754 72.5
unitig_748.g7268 Utricularia gibba HOM05D003495 ORTHO05D004159 6.5e-308 1060.4 777 69.6
CDE04G3053 Ceratophyllum demersum HOM05D003495 ORTHO05D004159 5.5e-307 1057.4 710 74.9
Gorai.002G166500 Gossypium raimondii HOM05D003495 ORTHO05D004159 6.1e-298 1027.3 737 70.0
Lsat_1_v5_gn_2_85980 Lactuca sativa HOM05D003495 ORTHO05D004159 2.4e-294 1015.4 761 66.9
CSS0011723 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 9.1e-294 1013.4 741 70.2
ECA238G4655 Erigeron canadensis HOM05D003495 ORTHO05D004159 4.5e-293 1011.1 754 66.4
Mapoly0124s0011 Marchantia polymorpha HOM05D003495 ORTHO05D004159 3.6e-290 1001.5 809 63.8
HanXRQChr14g0447961 Helianthus annuus HOM05D003495 ORTHO05D004159 3.8e-284 981.5 756 64.8
SMO351G0561 Selaginella moellendorffii HOM05D003495 ORTHO05D004159 8.5e-284 980.3 767 65.4
QL02p063585 Quercus lobata HOM05D003495 ORTHO05D004159 2.3e-273 945.7 637 74.1
vmacro05603 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 1.5e-272 943.0 629 75.2
Haze_14358 Corylus avellana HOM05D003495 ORTHO05D004159 7.8e-269 930.6 671 71.2
C03p08360 Brassica napus HOM05D003495 ORTHO05D004159 1.4e-265 919.8 636 71.1
A03p07290 Brassica napus HOM05D003495 ORTHO05D004159 5.2e-265 917.9 636 71.4
Pp3c13_5370 Physcomitrium patens HOM05D003495 ORTHO05D004159 4.6e-261 904.8 793 60.2
Cpa.g.sc14.256 Carica papaya HOM05D003495 ORTHO05D004159 7.8e-261 904.0 760 62.9
Pp3c3_1860 Physcomitrium patens HOM05D003495 ORTHO05D004159 1.9e-259 899.4 792 59.3
Pp3c12_3160 Physcomitrium patens HOM05D003495 ORTHO05D004159 4.3e-259 898.3 807 59.5
SEGI_22880 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 2.7e-253 879.0 679 66.7
Lj4C126G12 Lonicera japonica HOM05D003495 ORTHO05D004159 3.9e-252 875.2 602 73.4
A02p03170 Brassica napus HOM05D003495 ORTHO05D004159 5.4e-246 854.7 587 70.9
C02p07920 Brassica napus HOM05D003495 ORTHO05D004159 5.4e-246 854.7 587 70.9
BolC2t06715H Brassica oleracea HOM05D003495 ORTHO05D004159 5.4e-246 854.7 587 70.9
BraA02t05287Z Brassica rapa HOM05D003495 ORTHO05D004159 1.6e-245 853.2 587 70.7
BolC3t13343H Brassica oleracea HOM05D003495 ORTHO05D004159 1.1e-238 830.5 611 67.3
BraA03t10052Z Brassica rapa HOM05D003495 ORTHO05D004159 1.0e-236 823.9 611 67.4
AagrBONN_evm.TU.Sc2ySwM_228.311 Anthoceros agrestis HOM05D003495 ORTHO05D004159 4.0e-233 812.0 717 57.6
Nitab4.5_0001397g0040 Nicotiana tabacum HOM05D003495 ORTHO05D004159 9.0e-233 810.8 794 57.7
Actinidia36276 Actinidia chinensis HOM05D003495 ORTHO05D004159 8.4e-231 804.3 495 79.6
Nitab4.5_0000154g0080 Nicotiana tabacum HOM05D003495 ORTHO05D004159 9.7e-195 684.5 482 73.0
CBR_g31516 Chara braunii HOM05D003495 ORTHO05D004159 1.4e-180 637.5 868 42.3
Hma1.2p1_2186F.1_g316380 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 4.4e-179 632.5 484 68.8
Oeu032840.1 Olea europaea HOM05D003495 ORTHO05D004159 2.4e-177 626.7 428 72.9
CiPaw.03G081200 Carya illinoinensis HOM05D003495 ORTHO05D004159 8.3e-170 601.7 363 81.5
Hund20736 Selenicereus undatus HOM05D003495 ORTHO05D004159 4.0e-164 582.8 434 69.1
COL.COLO4_24184 Corchorus olitorius HOM05D003495 ORTHO05D004159 3.2e-153 546.6 380 73.2
Lj4A126T67 Lonicera japonica HOM05D003495 ORTHO05D004159 1.2e-80 305.4 164 92.7
SHI33618 Sapria himalayana HOM05D003495 ORTHO05D004159 1.2e-64 252.3 324 46.6
QL02p063603 Quercus lobata HOM05D003495 ORTHO05D004159 2.6e-62 244.6 158 76.6
vmacro05604 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 9.1e-60 236.1 147 80.3
Actinidia36277 Actinidia chinensis HOM05D003495 ORTHO05D004159 9.8e-54 216.1 178 62.9
Oeu032838.1 Olea europaea HOM05D003495 ORTHO05D004159 6.5e-50 203.4 111 89.2
FAN14G3604 Fragaria x ananassa HOM05D003495 ORTHO05D004159 3.1e-44 184.5 130 69.2
Hund20737 Selenicereus undatus HOM05D003495 ORTHO05D004159 7.0e-44 183.3 118 69.5
Haze_14359 Corylus avellana HOM05D003495 ORTHO05D004159 2.9e-42 177.9 155 59.4
Cre17.g703750 Chlamydomonas reinhardtii HOM05D003495 ORTHO05D004159 8.0e-40 169.9 444 28.6
CAN.G497.67 Capsicum annuum HOM05D003495 ORTHO05D004159 1.8e-36 158.7 105 71.4
Psat5g191680 Pisum sativum HOM05D003495 ORTHO05D004159 2.2e-29 135.2 115 63.5
COL.COLO4_24181 Corchorus olitorius HOM05D003495 ORTHO05D004159 1.2e-27 129.4 72 90.3
BraA02t05288Z Brassica rapa HOM05D003495 ORTHO05D004159 6.6e-26 123.6 71 84.5
SHI33612 Sapria himalayana HOM05D003495 ORTHO05D004159 8.6e-26 123.2 92 69.6
PGSC0003DMG400019864 Solanum tuberosum HOM05D003495 ORTHO05D004159 4.3e-25 120.9 66 90.9
A03p07300 Brassica napus HOM05D003495 ORTHO05D004159 8.1e-24 116.7 71 77.5
BraA03t10053Z Brassica rapa HOM05D003495 ORTHO05D004159 8.1e-24 116.7 71 77.5
C03p08370 Brassica napus HOM05D003495 ORTHO05D004159 1.4e-23 115.9 71 77.5
BolC3t13344H Brassica oleracea HOM05D003495 ORTHO05D004159 1.4e-23 115.9 71 77.5
CAN.G497.66 Capsicum annuum HOM05D003495 ORTHO05D004159 5.8e-22 110.5 284 31.0
Psat1g055400 Pisum sativum HOM05D003495 ORTHO05D004159 8.3e-21 106.7 90 57.8
HanXRQChr17g0549821 Helianthus annuus HOM05D003495 ORTHO05D004159 1.4e-20 105.9 71 78.9
SEGI_02656 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 1.2e-19 102.8 56 85.7
CSS0017914 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D011845 1.0e-18 99.8 66 71.2
CSS0034486 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D011845 1.3e-18 99.4 66 71.2
CAN.G497.59 Capsicum annuum HOM05D003495 ORTHO05D004159 2.3e-18 98.6 70 65.7
MCO10G374 Micromonas commoda HOM05D003495 ORTHO05D004159 1.9e-17 95.5 665 22.3
PGSC0003DMG400025596 Solanum tuberosum HOM05D000072 ORTHO05D002334 1.7e-13 82.4 40 95.0
arahy.Tifrunner.gnm1.ann1.7VHQ3C Arachis hypogaea HOM05D000394 ORTHO05D013471 1.0e-10 73.2 49 75.5
Lsat_1_v5_gn_4_36641 Lactuca sativa HOM05D001412 ORTHO05D002473 3.9e-10 71.2 53 69.8
CSS0030310 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D011845 3.3e-09 68.2 87 46.0
Prupe.3G143100 Prunus persica HOM05D000001 ORTHO05D000003 3.6e-08 64.7 70 45.7


User provided reference genes

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