Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 9.7e-178 626.7 318 100.0
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 2.1e-148 529.3 318 84.0
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 1.1e-125 453.8 317 69.1
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.9e-125 453.0 318 69.5
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 5.6e-125 451.4 318 70.1
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 1.2e-124 450.3 321 69.5
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 1.6e-124 449.9 316 70.6
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.1e-123 447.2 320 70.3
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.4e-123 446.8 327 67.6
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.4e-123 446.8 327 67.6
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.4e-123 446.8 314 69.7
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.3e-123 446.0 314 69.4
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 2.3e-123 446.0 319 67.7
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.1e-123 445.7 314 69.1
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.0e-123 445.3 314 69.4
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.0e-123 445.3 314 70.1
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 4.0e-123 445.3 314 69.1
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.2e-122 443.7 314 69.1
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 5.8e-122 441.4 321 67.3
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 7.5e-122 441.0 318 69.8
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 1.3e-121 440.3 315 69.2
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 3.7e-121 438.7 320 69.1
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 6.4e-121 438.0 317 68.1
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 6.4e-121 438.0 325 68.0
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 9.2e-120 434.1 318 65.7
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 1.6e-119 433.3 317 67.8
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 2.1e-119 433.0 320 69.7
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 2.7e-119 432.6 316 67.4
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 4.6e-119 431.8 329 65.3
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 1.3e-118 430.3 327 66.1
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 1.7e-118 429.9 316 67.1
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 2.3e-118 429.5 323 66.9
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 3.9e-118 428.7 329 65.0
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 5.1e-118 428.3 315 67.9
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 6.6e-118 427.9 322 65.8
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.9e-117 426.4 316 65.2
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 2.5e-117 426.0 322 65.5
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 4.3e-117 425.2 315 64.4
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 5.6e-117 424.9 312 65.4
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 9.5e-117 424.1 319 64.6
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 1.6e-116 423.3 317 66.6
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 2.1e-116 422.9 318 66.7
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 2.1e-116 422.9 311 64.3
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.8e-116 422.5 322 65.2
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 6.2e-116 421.4 315 64.8
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 8.1e-116 421.0 322 64.0
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 8.1e-116 421.0 319 64.6
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.4e-115 420.2 320 66.9
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 1.4e-115 420.2 321 65.7
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 1.4e-115 420.2 322 64.0
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 1.8e-115 419.9 322 65.8
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 1.8e-115 419.9 315 67.0
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 2.4e-115 419.5 315 66.0
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 2.4e-115 419.5 319 63.6
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 2.4e-115 419.5 320 66.9
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 3.1e-115 419.1 319 62.4
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 3.1e-115 419.1 319 63.6
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 4.0e-115 418.7 315 63.2
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 4.0e-115 418.7 312 64.4
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 6.8e-115 417.9 319 64.9
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 6.8e-115 417.9 317 65.6
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 1.5e-114 416.8 315 66.0
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 5.8e-114 414.8 344 60.2
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 5.8e-114 414.8 315 66.7
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 7.6e-114 414.5 320 66.2
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.7e-113 413.3 320 67.2
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 1.7e-113 413.3 329 62.9
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 4.9e-113 411.8 320 62.8
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 1.1e-112 410.6 355 60.0
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 3.2e-112 409.1 319 62.4
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 4.1e-112 408.7 314 65.0
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 7.1e-112 407.9 341 61.9
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 9.2e-112 407.5 315 64.8
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 1.2e-111 407.1 308 64.0
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 2.1e-111 406.4 313 64.5
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 2.7e-111 406.0 318 61.3
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 3.5e-111 405.6 319 63.3
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.5e-109 400.2 314 63.1
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 2.5e-109 399.4 321 62.3
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 3.3e-109 399.1 310 62.9
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 5.6e-109 398.3 321 62.9
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 9.6e-109 397.5 319 64.6
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 1.2e-108 397.1 319 64.6
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.4e-107 393.7 317 61.8
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 3.1e-107 392.5 316 62.3
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 1.2e-106 390.6 319 63.3
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 1.2e-106 390.6 319 63.3
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.6e-106 389.4 374 53.5
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 4.4e-106 388.7 331 62.2
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 4.4e-106 388.7 321 62.6
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 5.8e-106 388.3 278 69.1
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.7e-105 386.7 299 63.9
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 2.9e-105 386.0 326 63.5
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 2.9e-105 386.0 315 62.5
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 3.8e-105 385.6 296 64.5
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.1e-104 384.0 279 67.0
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 4.2e-104 382.1 258 71.7
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 1.1e-96 357.5 283 62.9
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 1.1e-96 357.5 241 73.4
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 6.0e-95 351.7 246 69.9
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 6.0e-95 351.7 307 57.7
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 9.6e-93 344.4 230 73.9
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 7.1e-88 328.2 239 66.1
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 7.1e-88 328.2 316 53.2
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 1.6e-84 317.0 238 66.8
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 6.9e-83 311.6 231 65.8
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 4.9e-81 305.4 201 74.6
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 5.5e-80 302.0 333 52.0
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.6e-79 300.4 312 54.2
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 5.1e-78 295.4 238 62.6
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 3.4e-74 282.7 241 63.1
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 5.9e-74 282.0 238 61.8
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 9.7e-69 264.6 300 47.0
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 1.8e-62 243.8 187 64.7
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.5e-61 240.7 190 64.2
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 4.5e-58 229.2 183 66.1
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 3.9e-54 216.1 313 43.5
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 5.9e-50 202.2 322 41.0
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 9.4e-48 194.9 131 67.2
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 1.6e-42 177.6 316 39.2
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 2.1e-39 167.2 156 59.0
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 6.3e-36 155.6 125 59.2
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-34 150.6 107 68.2
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 2.6e-29 133.7 127 53.5
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 3.4e-29 133.3 111 55.9
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 3.4e-29 133.3 111 55.9
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 3.4e-29 133.3 111 55.9
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 2.0e-26 124.0 90 65.6
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 5.9e-26 122.5 126 50.8
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 7.8e-26 122.1 103 60.2
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 7.3e-24 115.5 82 72.0
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 3.6e-23 113.2 86 69.8
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 1.1e-14 85.1 75 53.3
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 3.7e-12 76.6 53 64.2
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 1.9e-11 74.3 85 44.7
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 5.4e-11 72.8 57 50.9
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 2.3e-09 67.4 60 56.7
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 2.3e-09 67.4 60 56.7
PRCOL_00003005 Prasinoderma coloniale HOM05D005332 ORTHO05D333643 2.5e-08 63.9 194 27.8
AagrBONN_evm.TU.Sc2ySwM_228.3223 Anthoceros agrestis HOM05D000739 ORTHO05D003022 1.8e-06 57.8 321 24.9
Rhsim03G0132500 Rhododendron simsii HOM05D000739 ORTHO05D003022 3.1e-06 57.0 319 24.1
Pp3s34_190 Physcomitrium patens HOM05D005332 ORTHO05D309664 4.0e-06 56.6 298 24.8
Rhsim09G0164900 Rhododendron simsii HOM05D000739 ORTHO05D003022 4.0e-06 56.6 319 24.5


User provided reference genes

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