Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 4.5e-175 618.2 414 100.0
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 4.9e-121 438.7 327 73.1
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 4.9e-113 412.1 417 55.6
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 3.2e-112 409.5 373 59.5
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 1.5e-109 400.6 377 58.4
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 1.5e-109 400.6 378 59.0
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 2.1e-108 396.7 379 57.3
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 3.6e-108 396.0 378 57.1
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 8.1e-108 394.8 379 57.3
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 4.0e-107 392.5 418 53.6
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 5.2e-107 392.1 430 55.3
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 6.8e-107 391.7 384 56.8
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 8.9e-107 391.3 420 55.0
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 8.9e-107 391.3 379 61.7
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 1.2e-106 391.0 377 57.0
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 4.4e-106 389.0 419 53.9
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 4.4e-106 389.0 378 56.6
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 5.8e-106 388.7 377 56.5
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 9.9e-106 387.9 378 55.8
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 9.9e-106 387.9 378 56.9
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 1.3e-105 387.5 377 56.0
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 1.3e-105 387.5 428 56.5
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 1.7e-105 387.1 420 52.1
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 2.2e-105 386.7 378 56.3
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 4.9e-105 385.6 377 57.3
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 6.4e-105 385.2 414 56.8
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 1.1e-104 384.4 425 51.8
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 1.1e-104 384.4 378 57.7
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 2.4e-104 383.3 420 52.1
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 2.4e-104 383.3 415 53.5
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 3.2e-104 382.9 416 52.9
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 3.2e-104 382.9 378 56.9
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 3.2e-104 382.9 383 56.1
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 4.1e-104 382.5 378 55.3
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 5.4e-104 382.1 418 57.2
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 1.6e-103 380.6 377 57.3
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 2.1e-103 380.2 425 54.6
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 2.7e-103 379.8 374 57.0
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 1.3e-102 377.5 378 56.3
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 2.3e-102 376.7 377 55.4
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 3.0e-102 376.3 417 55.2
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 3.9e-102 375.9 376 54.3
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 5.1e-102 375.6 417 51.1
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 8.6e-102 374.8 341 58.9
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 8.6e-102 374.8 424 49.8
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 1.1e-101 374.4 381 55.6
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 1.5e-101 374.0 377 54.1
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 1.5e-101 374.0 375 55.2
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 1.9e-101 373.6 377 54.6
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 2.5e-101 373.2 342 57.9
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 3.3e-101 372.9 421 51.1
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 7.3e-101 371.7 377 55.7
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 1.6e-100 370.5 415 50.6
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 8.1e-100 368.2 429 60.8
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 1.1e-99 367.9 351 61.0
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 1.1e-99 367.9 380 54.7
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 8.9e-99 364.8 378 54.8
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 1.5e-98 364.0 377 53.6
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 2.0e-98 363.6 378 55.0
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 2.6e-98 363.2 347 57.1
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 5.8e-98 362.1 377 55.2
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 1.3e-97 360.9 345 56.2
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 2.2e-97 360.1 427 51.3
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 2.9e-97 359.8 377 53.6
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 2.9e-97 359.8 378 52.9
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 3.8e-97 359.4 375 53.6
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 3.8e-97 359.4 429 55.5
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 4.9e-97 359.0 379 53.8
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 8.4e-97 358.2 367 54.0
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 8.4e-97 358.2 341 56.3
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 1.1e-96 357.8 437 49.2
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 1.4e-96 357.5 379 54.4
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 1.9e-96 357.1 423 52.0
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 2.4e-96 356.7 379 53.0
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 1.2e-95 354.4 429 53.4
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.2e-95 354.4 380 65.3
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 2.7e-95 353.2 342 55.0
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 3.5e-95 352.8 343 59.2
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 4.6e-95 352.4 381 65.9
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 1.3e-94 350.9 381 65.4
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.3e-94 350.9 380 55.8
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 5.1e-94 349.0 381 55.4
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 5.1e-94 349.0 381 55.4
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 1.1e-93 347.8 411 50.9
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 9.6e-93 344.7 489 43.8
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 9.6e-93 344.7 381 55.1
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 1.3e-92 344.4 401 50.1
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 4.8e-92 342.4 346 55.5
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 6.2e-92 342.0 342 54.1
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 2.4e-91 340.1 340 53.5
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 1.2e-90 337.8 342 53.5
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 2.2e-89 333.6 336 51.8
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 7.1e-88 328.6 418 47.4
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 2.7e-87 326.6 341 52.8
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 2.3e-86 323.6 340 54.1
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 2.5e-85 320.1 325 53.5
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 3.3e-85 319.7 325 53.5
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 2.1e-84 317.0 418 47.4
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 3.6e-84 316.2 325 52.9
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 4.9e-81 305.8 385 47.8
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 7.9e-79 298.5 322 55.0
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 6.2e-76 288.9 275 56.7
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 2.5e-72 276.9 341 46.3
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 1.2e-71 274.6 349 45.0
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 3.7e-68 263.1 353 42.8
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 5.9e-66 255.8 333 46.5
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 1.7e-65 254.2 276 56.2
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 1.8e-62 244.2 335 49.9
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 3.7e-60 236.5 312 45.5
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 6.5e-49 199.1 364 35.7
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 9.4e-48 195.3 219 48.9
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 2.4e-43 180.6 130 68.5
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 1.9e-40 171.0 126 67.5
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 1.3e-36 158.3 123 61.8
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.1e-32 145.2 87 80.5
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 7.2e-24 115.9 320 31.2
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 2.7e-18 97.4 71 69.0
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 1.8e-14 84.7 131 36.6
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 4.6e-10 70.1 85 50.6
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 2.5e-08 64.3 47 59.6
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 4.3e-08 63.5 46 63.0
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 7.3e-08 62.8 46 60.9
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 4.7e-07 60.1 342 22.8


User provided reference genes

Program Settings