Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 7.8e-80 300.4 156 100.0
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 3.5e-40 168.7 105 89.5
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 4.8e-37 158.3 155 58.7
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 1.4e-33 146.7 137 57.7
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 3.6e-32 142.1 156 54.5
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 4.6e-32 141.7 156 51.9
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 2.3e-31 139.4 139 55.4
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 3.0e-31 139.0 155 52.3
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 3.0e-31 139.0 155 52.3
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 3.9e-31 138.7 151 54.3
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 6.7e-31 137.9 135 58.5
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 1.5e-30 136.7 139 54.0
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 2.5e-30 136.0 138 55.1
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 3.3e-30 135.6 149 51.7
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 5.7e-30 134.8 155 51.0
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 1.3e-29 133.7 138 54.3
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 1.7e-29 133.3 137 56.2
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 2.2e-29 132.9 151 49.7
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 3.7e-29 132.1 153 51.0
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 3.7e-29 132.1 151 49.7
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 8.2e-29 131.0 134 55.2
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 8.2e-29 131.0 148 48.6
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 8.2e-29 131.0 142 52.1
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 8.2e-29 131.0 153 51.6
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 8.2e-29 131.0 150 52.0
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 1.1e-28 130.6 152 50.7
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 1.1e-28 130.6 139 54.7
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 1.1e-28 130.6 150 50.0
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 1.4e-28 130.2 153 51.0
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 1.4e-28 130.2 149 49.7
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 1.8e-28 129.8 134 54.5
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 1.8e-28 129.8 136 51.5
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 2.4e-28 129.4 143 54.5
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 2.4e-28 129.4 148 48.6
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 3.1e-28 129.0 137 53.3
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 3.1e-28 129.0 137 52.6
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 4.1e-28 128.6 141 53.2
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 4.1e-28 128.6 150 48.7
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 5.3e-28 128.3 139 53.2
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 5.3e-28 128.3 135 54.8
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 5.3e-28 128.3 135 54.8
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 6.9e-28 127.9 137 52.6
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 6.9e-28 127.9 152 48.0
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 6.9e-28 127.9 134 55.2
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 9.1e-28 127.5 139 52.5
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 1.2e-27 127.1 139 50.4
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 1.2e-27 127.1 139 51.8
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 2.0e-27 126.3 145 50.3
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 2.0e-27 126.3 140 50.0
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 2.0e-27 126.3 138 53.6
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 2.6e-27 125.9 142 51.4
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 5.9e-27 124.8 138 51.4
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 5.9e-27 124.8 137 52.6
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 7.7e-27 124.4 146 49.3
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 7.7e-27 124.4 179 45.3
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 7.7e-27 124.4 152 49.3
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 7.7e-27 124.4 148 46.6
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 1.0e-26 124.0 137 52.6
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 1.3e-26 123.6 151 47.7
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 1.3e-26 123.6 139 51.8
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 1.7e-26 123.2 179 45.3
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 1.7e-26 123.2 159 47.8
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 2.2e-26 122.9 151 49.0
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 2.9e-26 122.5 136 54.4
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 3.8e-26 122.1 134 53.0
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 3.8e-26 122.1 137 52.6
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 1.9e-25 119.8 137 51.1
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 4.2e-25 118.6 134 50.7
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 4.2e-25 118.6 92 69.6
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 5.5e-25 118.2 144 49.3
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 1.2e-24 117.1 90 67.8
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 2.1e-24 116.3 134 50.7
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 2.7e-24 115.9 93 66.7
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 3.6e-24 115.5 146 49.3
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 6.1e-24 114.8 134 48.5
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 7.9e-24 114.4 141 51.1
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 7.9e-24 114.4 141 51.1
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 7.9e-24 114.4 151 48.3
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 7.9e-24 114.4 93 62.4
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 2.3e-23 112.8 141 50.4
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 2.3e-23 112.8 141 51.1
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 2.3e-23 112.8 141 51.1
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 3.0e-23 112.5 141 51.1
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 5.1e-23 111.7 134 48.5
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 5.1e-23 111.7 147 46.9
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 5.7e-22 108.2 142 45.1
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 9.7e-22 107.5 93 61.3
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.7e-21 106.7 93 59.1
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 2.2e-21 106.3 160 43.1
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 6.3e-21 104.8 145 47.6
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 4.1e-20 102.1 77 68.8
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 1.2e-19 100.5 114 50.9
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 2.0e-19 99.8 90 60.0
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 5.9e-19 98.2 91 57.1
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 1.0e-18 97.4 119 46.2
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 1.0e-18 97.4 148 42.6
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 2.9e-18 95.9 99 59.6
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 2.9e-18 95.9 113 48.7
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 3.8e-18 95.5 130 43.1
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 6.5e-18 94.7 159 42.1
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 1.1e-17 94.0 98 61.2
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.1e-17 94.0 112 48.2
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 2.5e-17 92.8 99 58.6
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 7.2e-17 91.3 165 40.6
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 7.2e-17 91.3 129 45.0
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 3.6e-16 89.0 110 46.4
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 3.6e-16 89.0 77 61.0
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 6.1e-16 88.2 112 45.5
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 1.8e-15 86.7 112 46.4
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 2.3e-15 86.3 127 42.5
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 5.2e-15 85.1 125 44.8
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 9.7e-14 80.9 72 58.3
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 1.3e-13 80.5 113 46.0
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 7.0e-12 74.7 157 35.7
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 9.1e-12 74.3 120 41.7
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 3.5e-11 72.4 144 34.7
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 4.5e-11 72.0 143 35.7
Duzib093G0320 Durio zibethinus HOM05D002103 ORTHO05D004020 7.7e-11 71.2 157 33.1
Duzib041G0561 Durio zibethinus HOM05D002103 ORTHO05D004020 8.5e-10 67.8 154 30.5
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 1.1e-09 67.4 73 52.1
MD08G1103400 Malus domestica HOM05D002103 ORTHO05D004020 1.5e-09 67.0 156 30.8
Thecc.08G010900 Theobroma cacao HOM05D002103 ORTHO05D004020 1.9e-09 66.6 156 30.8
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 2.5e-09 66.2 143 31.5
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 3.2e-09 65.9 156 34.0
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 5.5e-09 65.1 141 36.2
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 5.5e-09 65.1 106 41.5
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 7.2e-09 64.7 142 33.1
MD15G1084700 Malus domestica HOM05D002103 ORTHO05D004020 9.4e-09 64.3 140 32.9
TAR381G0883 Trochodendron aralioides HOM05D002103 ORTHO05D004020 9.4e-09 64.3 155 31.6
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 1.2e-08 63.9 138 31.9
Sp7g31080 Schrenkiella parvula HOM05D002103 ORTHO05D004020 1.6e-08 63.5 154 28.6
CiPaw.15G061600 Carya illinoinensis HOM05D002103 ORTHO05D004020 2.7e-08 62.8 140 32.9
CSS0022390 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 3.6e-08 62.4 155 34.8
Prupe.1G438400 Prunus persica HOM05D002103 ORTHO05D004020 3.6e-08 62.4 153 31.4
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 3.6e-08 62.4 131 34.4
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 6.1e-08 61.6 88 45.5
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 6.1e-08 61.6 148 30.4
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 8.0e-08 61.2 72 54.2
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 1.0e-07 60.8 156 30.8
Nn1g02998 Nelumbo nucifera HOM05D006603 ORTHO05D007786 1.4e-07 60.5 79 43.0
Atru.chr13.650 Acer truncatum HOM05D002103 ORTHO05D004020 1.8e-07 60.1 156 30.8
COL.COLO4_26478 Corchorus olitorius HOM05D002103 ORTHO05D004020 1.8e-07 60.1 156 27.6
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 2.3e-07 59.7 141 35.5
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 3.0e-07 59.3 86 44.2
CANSAT01G2416 Cannabis sativa HOM05D002103 ORTHO05D004020 3.0e-07 59.3 155 29.7
Actinidia23265 Actinidia chinensis HOM05D002103 ORTHO05D004020 5.2e-07 58.5 146 31.5
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 5.2e-07 58.5 58 53.4
Gohir.A06G017200 Gossypium hirsutum HOM05D002103 ORTHO05D004020 5.2e-07 58.5 148 29.1
MBI02_g17341_MAGBIO Magnolia biondii HOM05D002103 ORTHO05D004020 8.8e-07 57.8 164 28.7
A08p17650 Brassica napus HOM05D002103 ORTHO05D004020 1.2e-06 57.4 154 29.9
Ciclev10001804m.g Citrus clementina HOM05D002103 ORTHO05D004020 1.2e-06 57.4 154 29.9
MELO3C010883.2 Cucumis melo HOM05D002103 ORTHO05D004020 1.2e-06 57.4 149 28.9
Sabra02G0100000 Salix brachista HOM05D002103 ORTHO05D004020 1.2e-06 57.4 160 28.1
Peaxi162Scf00528g00417 Petunia axillaris HOM05D002103 ORTHO05D004020 1.5e-06 57.0 139 30.9
PGR083G1022 Punica granatum HOM05D002103 ORTHO05D004020 1.5e-06 57.0 140 25.7
BcaB03g12802 Brassica carinata HOM05D002103 ORTHO05D004020 2.0e-06 56.6 160 28.1
BraA08t33716Z Brassica rapa HOM05D002103 ORTHO05D004020 2.0e-06 56.6 154 29.9
CsaV3_2G028030 Cucumis sativus L. HOM05D002103 ORTHO05D004020 2.0e-06 56.6 149 28.9
Potri.014G031900 Populus trichocarpa HOM05D002103 ORTHO05D004020 2.0e-06 56.6 141 29.8
Peaxi162Scf00929g00314 Petunia axillaris HOM05D002103 ORTHO05D004020 2.6e-06 56.2 157 28.7
Eucgr.F00240 Eucalyptus grandis HOM05D002103 ORTHO05D004020 3.3e-06 55.8 132 29.5
GSVIVG01009523001 Vitis vinifera HOM05D002103 ORTHO05D004020 3.3e-06 55.8 146 31.5
TWI36G1154 Tripterygium wilfordii HOM05D002103 ORTHO05D004020 4.4e-06 55.5 154 27.9
Zm00001eb373130 Zea mays HOM05D002103 ORTHO05D004020 4.4e-06 55.5 146 32.9
CSS0022665 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 5.7e-06 55.1 150 31.3
Nn1g05835 Nelumbo nucifera HOM05D002103 ORTHO05D004020 7.5e-06 54.7 157 29.9
SEGI_34793 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 7.5e-06 54.7 67 43.3
SGA_v2.0_scaffold14G07034 Striga asiatica HOM05D002103 ORTHO05D004020 7.5e-06 54.7 140 27.9
AagrBONN_evm.TU.Sc2ySwM_362.2116 Anthoceros agrestis HOM05D006603 ORTHO05D007786 9.7e-06 54.3 146 32.9
BcaC01g00993 Brassica carinata HOM05D002103 ORTHO05D004020 9.7e-06 54.3 156 28.8
C03p86710 Brassica napus HOM05D002103 ORTHO05D004020 9.7e-06 54.3 156 28.8
BolC3t20967H Brassica oleracea HOM05D002103 ORTHO05D004020 9.7e-06 54.3 156 28.8
Nn5g30229 Nelumbo nucifera HOM05D002103 ORTHO05D004020 9.7e-06 54.3 145 29.7
Pp3c2_7000 Physcomitrium patens HOM05D002103 ORTHO05D007786 9.7e-06 54.3 149 28.2


User provided reference genes

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