Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 6.4e-42 173.7 91 100.0
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 1.3e-34 149.4 79 98.7
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 2.2e-34 148.7 84 90.5
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 6.4e-34 147.1 84 90.5
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 6.4e-34 147.1 84 90.5
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 8.4e-34 146.7 84 90.5
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.9e-33 145.6 84 88.1
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 1.9e-33 145.6 84 88.1
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.4e-33 145.2 84 88.1
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 2.4e-33 145.2 84 89.3
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 2.4e-33 145.2 84 88.1
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 3.2e-33 144.8 84 86.9
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 3.2e-33 144.8 84 86.9
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 3.2e-33 144.8 84 89.3
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 4.2e-33 144.4 84 88.1
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 5.5e-33 144.1 84 88.1
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 5.5e-33 144.1 89 82.0
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 5.5e-33 144.1 84 86.9
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 9.3e-33 143.3 84 88.1
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 9.3e-33 143.3 84 88.1
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 9.3e-33 143.3 84 86.9
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 9.3e-33 143.3 84 86.9
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 1.2e-32 142.9 84 88.1
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 1.2e-32 142.9 84 85.7
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 1.2e-32 142.9 84 88.1
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.6e-32 142.5 84 86.9
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.6e-32 142.5 84 88.1
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 2.1e-32 142.1 84 84.5
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 2.1e-32 142.1 84 88.1
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 2.1e-32 142.1 84 85.7
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 2.7e-32 141.7 84 84.5
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 2.7e-32 141.7 84 84.5
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 2.7e-32 141.7 84 88.1
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 2.7e-32 141.7 88 81.8
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 2.7e-32 141.7 88 81.8
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 2.7e-32 141.7 88 81.8
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 2.7e-32 141.7 88 81.8
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 2.7e-32 141.7 84 85.7
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 2.7e-32 141.7 84 86.9
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 2.7e-32 141.7 84 84.5
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 2.7e-32 141.7 84 86.9
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 2.7e-32 141.7 84 86.9
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 2.7e-32 141.7 81 88.9
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 3.5e-32 141.4 83 86.7
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 3.5e-32 141.4 84 88.1
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 3.5e-32 141.4 84 88.1
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 3.5e-32 141.4 84 85.7
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 6.0e-32 140.6 88 80.7
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 6.0e-32 140.6 84 85.7
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 6.0e-32 140.6 84 84.5
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 6.0e-32 140.6 84 84.5
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 7.9e-32 140.2 82 85.4
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 7.9e-32 140.2 84 84.5
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 1.0e-31 139.8 81 88.9
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 1.0e-31 139.8 84 86.9
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.3e-31 139.4 84 85.7
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.8e-31 139.0 84 84.5
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.8e-31 139.0 84 85.7
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 1.8e-31 139.0 84 83.3
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 1.8e-31 139.0 84 83.3
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.8e-31 139.0 84 86.9
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.8e-31 139.0 84 86.9
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 2.3e-31 138.7 84 84.5
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 2.3e-31 138.7 84 85.7
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 2.3e-31 138.7 84 83.3
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 2.3e-31 138.7 84 83.3
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 3.0e-31 138.3 84 83.3
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 3.0e-31 138.3 84 83.3
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.0e-31 138.3 84 83.3
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.0e-31 138.3 84 83.3
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 3.0e-31 138.3 80 88.8
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 3.0e-31 138.3 84 83.3
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 3.9e-31 137.9 80 88.8
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 3.9e-31 137.9 84 84.5
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 3.9e-31 137.9 84 83.3
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 5.1e-31 137.5 84 83.3
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 5.1e-31 137.5 84 83.3
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 5.1e-31 137.5 84 82.1
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 5.1e-31 137.5 84 83.3
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 5.1e-31 137.5 84 82.1
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 6.7e-31 137.1 84 84.5
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 1.1e-30 136.3 88 79.5
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 1.1e-30 136.3 84 81.0
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 1.5e-30 136.0 84 84.5
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 1.5e-30 136.0 83 81.9
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.9e-30 135.6 78 88.5
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 1.9e-30 135.6 84 83.3
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 1.9e-30 135.6 82 85.4
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.5e-30 135.2 80 87.5
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 2.5e-30 135.2 84 81.0
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 2.5e-30 135.2 84 82.1
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 2.5e-30 135.2 83 83.1
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 3.3e-30 134.8 84 83.3
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 3.3e-30 134.8 89 78.7
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 4.3e-30 134.4 84 81.0
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 5.6e-30 134.0 84 81.0
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 5.6e-30 134.0 84 82.1
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 7.4e-30 133.7 84 82.1
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 9.6e-30 133.3 84 81.0
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 9.6e-30 133.3 84 81.0
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 9.6e-30 133.3 83 83.1
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 9.6e-30 133.3 84 82.1
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 1.3e-29 132.9 84 79.8
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.3e-29 132.9 84 83.3
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 2.8e-29 131.7 83 79.5
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 3.7e-29 131.3 80 83.8
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 3.7e-29 131.3 84 79.8
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 4.8e-29 131.0 80 82.5
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 8.2e-29 130.2 83 80.7
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.1e-28 129.8 80 85.0
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 1.8e-28 129.0 84 81.0
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 2.4e-28 128.6 80 82.5
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 2.4e-28 128.6 80 82.5
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 3.1e-28 128.3 80 83.8
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 3.1e-28 128.3 77 84.4
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 4.0e-28 127.9 81 82.7
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 4.0e-28 127.9 81 82.7
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 9.0e-28 126.7 80 80.0
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 3.4e-27 124.8 84 75.0
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.7e-26 122.5 84 73.8
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.2e-26 122.1 115 60.9
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.2e-24 116.3 79 74.7
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 1.0e-23 113.2 65 87.7
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 3.0e-23 111.7 74 77.0
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.9e-23 111.3 67 83.6
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.4e-22 107.1 65 83.1
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 1.3e-21 106.3 81 63.0
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 6.3e-21 104.0 64 81.2
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.2e-19 99.8 78 64.1
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.5e-19 99.4 64 79.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 1.7e-18 95.9 80 62.5
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.7e-18 95.9 84 56.0
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 5.0e-18 94.4 80 62.5
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 3.6e-16 88.2 64 71.9
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.0e-15 86.7 80 56.2
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 3.0e-15 85.1 51 78.4
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 1.5e-14 82.8 51 76.5
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.4e-14 80.5 48 85.4
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 1.7e-13 79.3 51 84.3
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 3.7e-13 78.2 45 91.1
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 6.3e-13 77.4 44 84.1
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 1.1e-12 76.6 50 80.0
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.8e-12 75.9 58 60.3
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 1.8e-12 75.9 44 81.8
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 2.4e-12 75.5 44 81.8
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 9.1e-12 73.6 47 74.5
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 9.1e-12 73.6 77 51.9
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 1.2e-11 73.2 51 76.5
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 1.2e-11 73.2 42 90.5
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 8.5e-10 67.0 75 48.0
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 1.9e-09 65.9 84 44.0
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 4.2e-09 64.7 78 44.9
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.6e-08 62.8 59 50.8
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.0e-07 60.1 35 85.7
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 5.1e-07 57.8 37 78.4
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.5e-06 56.2 34 76.5
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 2.0e-06 55.8 33 78.8
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 4.4e-06 54.7 52 61.5


User provided reference genes

Program Settings