Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.6e-132 476.1 237 100.0
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 7.7e-63 244.6 194 67.0
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 5.0e-54 215.3 157 64.3
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 5.2e-51 205.3 189 56.6
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 5.2e-51 205.3 166 59.0
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 5.2e-51 205.3 191 53.9
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 6.8e-51 204.9 196 55.1
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 6.8e-51 204.9 196 55.1
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 5.7e-50 201.8 195 52.8
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 7.5e-50 201.4 195 53.3
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 9.8e-50 201.1 189 54.5
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 9.8e-50 201.1 187 55.1
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 9.8e-50 201.1 189 54.5
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 1.7e-49 200.3 189 54.5
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 1.7e-49 200.3 199 53.3
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 1.7e-49 200.3 188 54.3
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 2.2e-49 199.9 187 55.1
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 2.8e-49 199.5 187 54.5
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 2.8e-49 199.5 194 52.1
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 2.8e-49 199.5 199 52.8
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 2.8e-49 199.5 194 53.1
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 3.7e-49 199.1 192 52.6
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 3.7e-49 199.1 186 53.8
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 3.7e-49 199.1 190 53.7
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 3.7e-49 199.1 189 55.0
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 4.9e-49 198.7 197 51.8
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 4.9e-49 198.7 194 52.6
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 6.3e-49 198.4 194 54.6
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 8.3e-49 198.0 193 51.8
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 1.4e-48 197.2 262 45.8
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 1.8e-48 196.8 194 53.1
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 2.4e-48 196.4 193 51.8
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 2.4e-48 196.4 194 52.6
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 2.4e-48 196.4 196 54.1
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 2.4e-48 196.4 171 59.1
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 3.2e-48 196.1 186 54.3
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 3.2e-48 196.1 187 54.0
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 4.1e-48 195.7 197 53.3
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 5.4e-48 195.3 186 54.3
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 5.4e-48 195.3 200 49.5
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 5.4e-48 195.3 193 54.4
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 9.2e-48 194.5 189 52.9
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 1.2e-47 194.1 192 52.6
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 1.2e-47 194.1 194 51.0
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 1.6e-47 193.7 186 51.6
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 2.0e-47 193.4 171 57.9
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 2.0e-47 193.4 203 50.2
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 2.7e-47 193.0 188 53.7
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 3.5e-47 192.6 187 52.9
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 4.5e-47 192.2 198 51.0
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 4.5e-47 192.2 194 50.5
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 5.9e-47 191.8 195 51.3
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 1.0e-46 191.0 194 53.1
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 1.3e-46 190.7 194 52.1
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 1.3e-46 190.7 194 50.0
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 1.7e-46 190.3 189 51.3
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 1.7e-46 190.3 189 51.3
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 1.7e-46 190.3 191 51.8
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 1.7e-46 190.3 190 51.6
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 2.3e-46 189.9 189 52.4
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 2.3e-46 189.9 124 70.2
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 2.3e-46 189.9 190 53.2
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 2.9e-46 189.5 189 51.3
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 2.9e-46 189.5 237 46.4
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 3.9e-46 189.1 190 52.1
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 6.6e-46 188.3 196 51.0
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 6.6e-46 188.3 189 52.4
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 8.6e-46 188.0 195 50.3
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 1.5e-45 187.2 232 46.1
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.9e-45 186.8 190 51.1
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 2.5e-45 186.4 189 50.8
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 2.5e-45 186.4 192 51.6
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 3.3e-45 186.0 189 49.7
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.3e-45 186.0 190 51.1
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 3.3e-45 186.0 189 49.7
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 4.3e-45 185.7 190 51.1
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 5.6e-45 185.3 194 52.6
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 2.8e-44 183.0 189 49.2
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 3.6e-44 182.6 190 51.1
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 4.7e-44 182.2 187 52.4
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 4.7e-44 182.2 188 50.0
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 6.1e-44 181.8 190 50.5
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 6.1e-44 181.8 190 50.5
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 1.0e-43 181.0 196 46.9
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 1.4e-43 180.6 190 50.0
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.4e-43 180.6 194 50.0
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 1.4e-43 180.6 200 49.5
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.1e-43 179.5 188 48.4
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 6.8e-43 178.3 190 49.5
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 6.8e-43 178.3 183 50.8
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 1.5e-42 177.2 190 50.0
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.0e-42 176.8 188 48.9
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.4e-42 175.6 218 45.0
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 4.4e-42 175.6 188 49.5
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 7.5e-42 174.9 168 54.2
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.2e-41 173.3 194 46.9
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 3.7e-41 172.6 188 48.9
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 4.9e-41 172.2 191 48.7
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 6.4e-41 171.8 189 50.3
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.1e-40 171.0 186 47.3
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.9e-40 170.2 187 50.3
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.2e-40 169.5 200 45.5
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 4.1e-40 169.1 187 49.7
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 5.4e-40 168.7 163 52.1
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 5.4e-40 168.7 185 46.5
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 1.6e-39 167.2 165 54.5
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 4.6e-39 165.6 118 65.3
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 6.0e-39 165.2 189 49.2
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 1.0e-38 164.5 200 44.0
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 5.6e-37 158.7 150 54.0
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.6e-36 157.1 188 44.1
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.2e-34 151.0 141 53.9
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 5.8e-34 148.7 143 52.4
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 5.8e-34 148.7 79 89.9
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 5.8e-34 148.7 144 52.1
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 2.2e-33 146.7 210 42.4
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 4.9e-33 145.6 191 45.0
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 8.3e-33 144.8 166 42.8
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 4.1e-32 142.5 150 50.0
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 1.6e-31 140.6 172 44.2
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 4.6e-31 139.0 256 35.9
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 4.6e-31 139.0 174 45.4
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 3.9e-30 136.0 151 49.0
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 3.3e-29 132.9 128 55.5
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.6e-28 130.6 152 46.1
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.4e-27 127.5 88 65.9
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.2e-26 124.4 133 47.4
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 5.8e-26 122.1 117 52.1
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 7.6e-26 121.7 162 44.4
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 2.9e-25 119.8 88 63.6
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 1.9e-24 117.1 192 39.6
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 9.2e-24 114.8 130 48.5
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.0e-22 111.3 90 57.8
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 1.3e-22 110.9 183 38.8
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 1.7e-22 110.5 202 36.1
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 6.2e-20 102.1 144 41.7
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 2.4e-19 100.1 59 76.3
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 2.9e-17 93.2 54 75.9
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 4.9e-17 92.4 54 72.2
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 5.4e-16 89.0 78 55.1
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 1.0e-14 84.7 54 63.0
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 1.6e-07 60.8 72 48.6


User provided reference genes

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