Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 5.0e-260 900.6 454 100.0
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 3.3e-155 552.4 449 61.0
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 9.9e-83 311.6 495 37.8
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 3.7e-82 309.7 453 38.0
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 3.6e-77 293.1 459 38.1
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 3.4e-75 286.6 464 37.3
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 6.4e-74 282.3 466 37.3
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 1.1e-73 281.6 463 36.1
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 3.2e-73 280.0 464 35.6
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 4.2e-73 279.6 473 34.9
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 7.1e-73 278.9 451 36.6
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 1.2e-72 278.1 440 36.1
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 1.7e-71 274.2 457 34.8
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 1.7e-71 274.2 461 35.8
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 3.0e-71 273.5 466 36.3
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 2.5e-70 270.4 453 34.0
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 3.3e-70 270.0 463 35.0
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 2.8e-69 266.9 467 34.0
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 2.4e-68 263.8 459 34.9
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 2.4e-68 263.8 496 33.3
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 3.1e-68 263.5 461 36.2
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 9.0e-68 261.9 464 34.9
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 2.6e-67 260.4 474 34.6
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 3.8e-66 256.5 448 34.8
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 6.4e-66 255.8 461 33.6
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 1.1e-65 255.0 449 35.9
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 1.1e-65 255.0 480 32.3
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 3.2e-65 253.4 472 33.7
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 4.2e-65 253.1 457 33.9
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 1.2e-64 251.5 448 34.8
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 6.0e-64 249.2 472 32.6
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 7.8e-64 248.8 468 35.0
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 1.0e-63 248.4 448 34.8
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 2.3e-63 247.3 450 32.9
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 3.0e-63 246.9 448 34.8
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 1.1e-62 245.0 456 32.9
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 1.5e-62 244.6 448 33.5
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 1.9e-62 244.2 470 33.4
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 1.9e-62 244.2 482 32.2
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 9.6e-62 241.9 448 33.7
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 1.6e-61 241.1 501 31.1
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 3.6e-61 240.0 426 34.3
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 4.8e-61 239.6 448 32.6
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 4.8e-61 239.6 448 32.6
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 4.0e-60 236.5 438 33.6
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 9.0e-60 235.3 435 33.6
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 9.0e-60 235.3 481 34.1
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.6e-59 233.8 441 32.0
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.9e-58 230.3 442 31.9
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.7e-56 223.8 429 31.7
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 3.5e-56 223.4 410 35.4
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 6.7e-55 219.2 454 31.5
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 1.1e-54 218.4 446 31.4
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 2.1e-53 214.2 356 35.1
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 2.8e-53 213.8 356 35.4
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 4.0e-52 209.9 398 34.4
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.2e-51 208.4 424 31.8
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 1.0e-47 195.3 445 31.5
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 3.9e-47 193.4 405 32.1
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 6.7e-47 192.6 390 33.1
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 3.3e-46 190.3 395 30.9
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 2.1e-45 187.6 471 29.1
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 1.5e-43 181.4 328 33.2
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 2.0e-43 181.0 426 30.8
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 5.8e-43 179.5 380 31.3
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 1.9e-41 174.5 382 28.5
CiPaw.04G189500 Carya illinoinensis HOM05D007808 ORTHO05D009895 7.1e-41 172.6 208 41.3
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 3.8e-34 150.2 306 31.4
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 7.4e-30 136.0 294 29.9
Haze_24684 Corylus avellana HOM05D007808 ORTHO05D009895 2.8e-29 134.0 229 35.8
Cpa.g.sc87.15 Carica papaya HOM05D007808 ORTHO05D009895 1.0e-26 125.6 229 34.9
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 6.7e-23 112.8 247 30.8
Gorai.002G091900 Gossypium raimondii HOM05D007808 ORTHO05D009895 5.3e-20 103.2 224 33.0
Pp3c1_42330 Physcomitrium patens HOM05D007808 ORTHO05D009895 1.3e-18 98.6 470 23.6
AagrBONN_evm.TU.Sc2ySwM_117.2846 Anthoceros agrestis HOM05D007808 ORTHO05D009895 6.5e-18 96.3 441 22.7
CiPaw.04G189400 Carya illinoinensis HOM05D007808 ORTHO05D009895 2.7e-16 90.9 89 47.2
SEGI_27571 Sequoiadendron giganteum HOM05D007808 ORTHO05D009895 5.0e-10 70.1 249 24.5
Sp2g08850 Schrenkiella parvula HOM05D007808 ORTHO05D009895 2.5e-09 67.8 193 27.5
FAN27G0174 Fragaria x ananassa HOM05D007808 ORTHO05D009895 4.7e-08 63.5 73 43.8
PGSC0003DMG400003825 Solanum tuberosum HOM05D007808 ORTHO05D009895 4.7e-08 63.5 55 47.3
CANSAT56G3388 Cannabis sativa HOM05D007808 ORTHO05D009895 1.4e-07 62.0 46 56.5


User provided reference genes

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