Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 6.4e-154 547.4 272 100.0
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 1.0e-82 310.8 265 58.9
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 5.0e-82 308.5 229 60.7
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 1.1e-81 307.4 231 61.0
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 1.5e-81 307.0 222 62.6
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 5.5e-81 305.1 233 61.4
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 9.4e-81 304.3 231 61.5
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 1.6e-80 303.5 230 63.0
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.6e-80 303.5 242 58.3
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 2.7e-80 302.8 235 60.0
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 3.6e-80 302.4 224 61.2
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 3.6e-80 302.4 235 60.4
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 4.7e-80 302.0 227 61.2
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 4.7e-80 302.0 223 61.9
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 4.7e-80 302.0 264 56.1
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 6.1e-80 301.6 241 58.9
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 8.0e-80 301.2 223 61.0
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 8.0e-80 301.2 230 60.0
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 1.4e-79 300.4 232 59.9
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 1.8e-79 300.1 232 60.3
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 2.3e-79 299.7 233 61.4
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 2.3e-79 299.7 223 60.5
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 3.0e-79 299.3 223 61.0
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 5.2e-79 298.5 239 58.2
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 5.2e-79 298.5 244 58.6
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 5.2e-79 298.5 257 56.4
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 5.2e-79 298.5 266 56.0
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 6.8e-79 298.1 244 59.0
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 6.8e-79 298.1 232 59.9
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 6.8e-79 298.1 224 61.2
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 8.8e-79 297.7 246 58.5
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 8.8e-79 297.7 244 58.2
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 1.2e-78 297.4 223 61.0
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 1.2e-78 297.4 231 60.6
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 1.5e-78 297.0 222 63.1
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 2.0e-78 296.6 224 62.1
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 2.0e-78 296.6 276 52.5
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 2.0e-78 296.6 257 56.8
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 2.0e-78 296.6 244 58.2
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 2.6e-78 296.2 244 58.2
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 3.4e-78 295.8 249 57.0
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 9.8e-78 294.3 221 62.9
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 9.8e-78 294.3 252 56.3
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 9.8e-78 294.3 227 61.2
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 9.8e-78 294.3 223 60.5
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 9.8e-78 294.3 255 56.9
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.3e-77 293.9 223 60.1
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 1.3e-77 293.9 270 54.4
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 1.3e-77 293.9 267 53.9
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 1.7e-77 293.5 270 54.8
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 1.7e-77 293.5 223 60.1
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 1.7e-77 293.5 263 55.9
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 2.2e-77 293.1 224 60.7
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 2.2e-77 293.1 243 58.0
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 2.8e-77 292.7 266 56.0
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 3.7e-77 292.4 264 53.4
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 3.7e-77 292.4 223 60.5
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 6.3e-77 291.6 265 54.7
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 6.3e-77 291.6 267 54.7
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 6.3e-77 291.6 232 58.6
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 8.3e-77 291.2 270 54.1
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 8.3e-77 291.2 222 60.4
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 8.3e-77 291.2 220 60.9
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 1.1e-76 290.8 222 59.9
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 1.1e-76 290.8 268 52.6
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 1.1e-76 290.8 220 60.5
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 1.4e-76 290.4 239 58.6
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 1.4e-76 290.4 267 55.1
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 2.4e-76 289.7 227 59.9
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 2.4e-76 289.7 223 60.5
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 3.1e-76 289.3 221 61.1
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 4.1e-76 288.9 237 59.1
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 4.1e-76 288.9 272 53.3
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 5.4e-76 288.5 223 60.5
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 7.0e-76 288.1 222 59.5
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 1.2e-75 287.3 225 60.4
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.6e-75 287.0 238 58.4
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 2.0e-75 286.6 252 56.0
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 4.5e-75 285.4 259 53.7
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 2.2e-74 283.1 264 54.2
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 8.5e-74 281.2 227 59.5
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 3.2e-73 279.3 276 52.5
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 3.2e-73 279.3 253 54.2
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 3.2e-73 279.3 230 57.0
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 5.5e-73 278.5 231 56.7
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 7.2e-73 278.1 245 54.7
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 7.2e-73 278.1 227 57.3
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 7.2e-73 278.1 223 58.3
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 7.2e-73 278.1 231 56.7
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 2.1e-72 276.6 228 58.3
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.4e-71 273.9 227 56.8
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 2.6e-70 269.6 225 56.4
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 2.8e-69 266.2 215 58.1
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 2.4e-68 263.1 222 57.2
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 2.4e-68 263.1 237 54.0
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 2.4e-68 263.1 193 63.7
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 4.1e-68 262.3 235 56.2
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.2e-67 260.8 227 55.5
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 2.0e-67 260.0 228 53.9
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.7e-66 256.9 271 50.6
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 6.6e-66 255.0 228 53.1
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 1.1e-65 254.2 220 55.9
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 2.6e-62 243.0 240 50.8
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 4.4e-62 242.3 232 50.9
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 5.7e-62 241.9 240 50.8
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 7.5e-62 241.5 241 50.2
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 1.3e-61 240.7 249 49.4
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 1.7e-61 240.4 223 52.9
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 1.7e-61 240.4 224 52.7
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 4.3e-57 225.7 181 64.1
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 3.1e-55 219.5 172 59.9
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 9.8e-54 214.5 221 53.4
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 9.8e-54 214.5 163 60.7
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.1e-52 209.1 167 59.3
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 7.0e-52 208.4 172 57.6
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 2.0e-51 206.8 152 64.5
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 6.0e-51 205.3 230 44.3
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 3.6e-48 196.1 163 56.4
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 3.1e-47 193.0 207 45.4
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 1.9e-44 183.7 162 55.6
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 1.7e-42 177.2 205 45.9
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 7.3e-41 171.8 131 58.8
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 6.2e-40 168.7 135 56.3
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 1.9e-36 157.1 170 50.6
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 1.5e-33 147.5 141 49.6
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 9.6e-33 144.8 134 50.0
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 8.9e-31 138.3 187 44.4
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 5.8e-30 135.6 170 44.7
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.3e-23 112.5 127 50.4
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 3.2e-20 103.2 90 53.3
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 4.8e-16 89.4 90 44.4
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 4.0e-15 86.3 249 29.7
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 2.9e-13 80.1 131 36.6
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.2e-11 74.7 62 56.5
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 1.3e-10 71.2 133 34.6
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 6.7e-10 68.9 75 52.0
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 1.5e-09 67.8 95 40.0
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 6.2e-08 62.4 110 35.5
PRCOL_00000814 Prasinoderma coloniale HOM05D005733 ORTHO05D006928 4.5e-06 56.2 90 42.2
arahy.Tifrunner.gnm1.ann1.KDYD97 Arachis hypogaea HOM05D004023 ORTHO05D004681 7.6e-06 55.5 133 31.6


User provided reference genes

Program Settings