Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0805700 Oryza sativa ssp. japonica HOM05D006467 ORTHO05D008012 3.3e-64 248.4 145 100.0
Zm00001eb191980 Zea mays HOM05D006467 ORTHO05D008012 1.3e-41 173.3 137 65.7
Zm00001eb258270 Zea mays HOM05D006467 ORTHO05D008012 2.3e-41 172.6 119 71.4
HPP92_022407 Vanilla planifolia HOM05D006467 ORTHO05D008012 1.8e-30 136.3 122 57.4
HPP92_027503 Vanilla planifolia HOM05D006467 ORTHO05D008012 3.1e-30 135.6 122 56.6
Thecc.05G060700 Theobroma cacao HOM05D006467 ORTHO05D008012 5.7e-16 88.2 118 42.4
TPR.G21203 Trifolium pratense HOM05D006467 ORTHO05D008012 7.4e-16 87.8 126 42.1
QL07p044433 Quercus lobata HOM05D006467 ORTHO05D008012 9.7e-16 87.4 113 42.5
Potri.016G090000 Populus trichocarpa HOM05D006467 ORTHO05D008012 6.3e-15 84.7 126 38.1
Ca_11474_v3 Cicer arietinum L. HOM05D006467 ORTHO05D008012 1.8e-14 83.2 126 42.1
Hma1.2p1_0614F.1_g189470 Hydrangea macrophylla HOM05D006467 ORTHO05D008012 1.8e-14 83.2 116 39.7
Dinv35757 Davidia involucrata HOM05D006467 ORTHO05D008012 2.4e-14 82.8 126 40.5
Gohir.A04G074100 Gossypium hirsutum HOM05D006467 ORTHO05D008012 3.1e-14 82.4 119 42.0
Medtr1g064490 Medicago truncatula HOM05D006467 ORTHO05D008012 3.1e-14 82.4 126 42.1
PSO063G5019 Papaver somniferum HOM05D006467 ORTHO05D008012 3.1e-14 82.4 126 40.5
PSO339G1849 Papaver somniferum HOM05D006467 ORTHO05D008012 3.1e-14 82.4 126 40.5
Dinv35529 Davidia involucrata HOM05D006467 ORTHO05D008012 5.3e-14 81.6 125 40.0
Atru.chr8.1867 Acer truncatum HOM05D006467 ORTHO05D008012 6.9e-14 81.3 119 40.3
arahy.Tifrunner.gnm1.ann1.HNS49Q Arachis hypogaea HOM05D006467 ORTHO05D008012 6.9e-14 81.3 122 39.3
arahy.Tifrunner.gnm1.ann1.RH0WXQ Arachis hypogaea HOM05D006467 ORTHO05D008012 6.9e-14 81.3 122 39.3
arahy.Tifrunner.gnm1.ann1.VPUZ6C Arachis hypogaea HOM05D006467 ORTHO05D008012 6.9e-14 81.3 122 39.3
COL.COLO4_27023 Corchorus olitorius HOM05D006467 ORTHO05D008012 6.9e-14 81.3 103 46.6
Lalb_Chr21g0314871 Lupinus albus HOM05D006467 ORTHO05D008012 1.2e-13 80.5 117 41.9
Potri.006G127800 Populus trichocarpa HOM05D006467 ORTHO05D008012 1.2e-13 80.5 118 37.3
THA.LOC104823447 Tarenaya hassleriana HOM05D006467 ORTHO05D008012 1.2e-13 80.5 116 41.4
BolC3t14804H Brassica oleracea HOM05D006467 ORTHO05D008012 1.5e-13 80.1 117 41.9
MBI07_g19293_MAGBIO Magnolia biondii HOM05D006467 ORTHO05D008012 2.0e-13 79.7 118 39.0
BcaC01g06644 Brassica carinata HOM05D006467 ORTHO05D008012 3.4e-13 79.0 117 42.7
Manes.08G007300 Manihot esculenta HOM05D006467 ORTHO05D008012 3.4e-13 79.0 112 40.2
Nitab4.5_0000101g0130 Nicotiana tabacum HOM05D006467 ORTHO05D008012 3.4e-13 79.0 119 39.5
Phvul.007G220100 Phaseolus vulgaris HOM05D006467 ORTHO05D008012 3.4e-13 79.0 117 39.3
Aqoxy1G01232 Aquilegia oxysepala HOM05D006467 ORTHO05D008012 4.5e-13 78.6 103 38.8
MSTRG.19165 Avicennia marina HOM05D006467 ORTHO05D008012 4.5e-13 78.6 127 39.4
A03p20520 Brassica napus HOM05D006467 ORTHO05D008012 4.5e-13 78.6 117 42.7
BraA03t11294Z Brassica rapa HOM05D006467 ORTHO05D008012 4.5e-13 78.6 117 42.7
FAN09G2873 Fragaria x ananassa HOM05D006467 ORTHO05D008012 4.5e-13 78.6 115 40.0
Lj5g0010745 Lotus japonicus HOM05D006467 ORTHO05D008012 5.9e-13 78.2 126 39.7
CANSAT80G0273 Cannabis sativa HOM05D006467 ORTHO05D008012 7.7e-13 77.8 117 40.2
Actinidia19675 Actinidia chinensis HOM05D006467 ORTHO05D008012 1.0e-12 77.4 125 36.8
C03p24120 Brassica napus HOM05D006467 ORTHO05D008012 1.0e-12 77.4 117 41.9
Duzib128G1557 Durio zibethinus HOM05D006467 ORTHO05D008012 1.0e-12 77.4 118 40.7
Peaxi162Scf00123g00014 Petunia axillaris HOM05D006467 ORTHO05D008012 1.0e-12 77.4 115 39.1
AT2G37195 Arabidopsis thaliana HOM05D006467 ORTHO05D008012 1.3e-12 77.0 116 40.5
Cfa017565 Carpinus fangiana HOM05D006467 ORTHO05D008012 1.3e-12 77.0 117 41.0
Ciclev10013106m.g Citrus clementina HOM05D006467 ORTHO05D008012 1.3e-12 77.0 117 39.3
RcHm_v2.0_Chr3g0469601 Rosa chinensis HOM05D006467 ORTHO05D008012 1.3e-12 77.0 115 37.4
Aa31LG5G22520 Aethionema arabicum HOM05D006467 ORTHO05D008012 1.7e-12 76.6 117 40.2
SalBow8G4982 Salvia bowleyana HOM05D006467 ORTHO05D008012 1.7e-12 76.6 120 39.2
Gorai.009G417600 Gossypium raimondii HOM05D006467 ORTHO05D008012 2.2e-12 76.3 131 36.6
Sc02g0001830 Simmondsia chinensis HOM05D006467 ORTHO05D008012 2.2e-12 76.3 117 37.6
AL4G33560 Arabidopsis lyrata HOM05D006467 ORTHO05D008012 2.9e-12 75.9 114 40.4
CiPaw.09G176000 Carya illinoinensis HOM05D006467 ORTHO05D008012 2.9e-12 75.9 127 37.0
FAN14G3947 Fragaria x ananassa HOM05D006467 ORTHO05D008012 2.9e-12 75.9 115 37.4
Nitab4.5_0003923g0010 Nicotiana tabacum HOM05D006467 ORTHO05D008012 3.8e-12 75.5 115 39.1
GSVIVG01025685001 Vitis vinifera HOM05D006467 ORTHO05D008012 3.8e-12 75.5 106 38.7
Carub.0004s1909 Capsella rubella HOM05D006467 ORTHO05D008012 5.0e-12 75.1 112 40.2
Thhalv10017389m.g Eutrema salsugineum HOM05D006467 ORTHO05D008012 6.5e-12 74.7 116 38.8
Gohir.D04G113200 Gossypium hirsutum HOM05D006467 ORTHO05D008012 6.5e-12 74.7 86 48.8
Sabra16G0095600 Salix brachista HOM05D006467 ORTHO05D008012 6.5e-12 74.7 143 33.6
TWI77G0724 Tripterygium wilfordii HOM05D006467 ORTHO05D008012 6.5e-12 74.7 116 37.1
TAR369G0155 Trochodendron aralioides HOM05D006467 ORTHO05D008012 6.5e-12 74.7 117 36.8
CSS0042234 Camellia sinensis var. sinensis HOM05D006467 ORTHO05D008012 8.5e-12 74.3 116 37.9
CARHR131710 Cardamine hirsuta HOM05D006467 ORTHO05D008012 8.5e-12 74.3 116 38.8
FAN02G4276 Fragaria x ananassa HOM05D006467 ORTHO05D008012 8.5e-12 74.3 115 38.3
Sabra06G0100500 Salix brachista HOM05D006467 ORTHO05D008012 8.5e-12 74.3 94 44.7
Sp4g19510 Schrenkiella parvula HOM05D006467 ORTHO05D008012 8.5e-12 74.3 116 38.8
Glyma.10G053300 Glycine max HOM05D006467 ORTHO05D008012 1.1e-11 73.9 116 38.8
Gohir.D09G145300 Gossypium hirsutum HOM05D006467 ORTHO05D008012 1.1e-11 73.9 115 40.0
Haze_20589 Corylus avellana HOM05D006467 ORTHO05D008012 1.4e-11 73.6 91 46.2
VMungo0720G0455 Vigna mungo HOM05D006467 ORTHO05D008012 1.4e-11 73.6 117 36.8
CAN.G888.4 Capsicum annuum HOM05D006467 ORTHO05D008012 2.5e-11 72.8 123 39.0
Cpa.g.sc102.12 Carica papaya HOM05D006467 ORTHO05D008012 2.5e-11 72.8 115 33.9
Gohir.A09G149400 Gossypium hirsutum HOM05D006467 ORTHO05D008012 2.5e-11 72.8 115 40.0
Nn2g13105 Nelumbo nucifera HOM05D006467 ORTHO05D008012 2.5e-11 72.8 117 35.0
Psat6g070840 Pisum sativum HOM05D006467 ORTHO05D008012 3.2e-11 72.4 79 49.4
HanXRQChr07g0195271 Helianthus annuus HOM05D006467 ORTHO05D008012 4.2e-11 72.0 124 34.7
Oeu059967.1 Olea europaea HOM05D006467 ORTHO05D008012 4.2e-11 72.0 117 36.8
Nn2g10804 Nelumbo nucifera HOM05D006467 ORTHO05D008012 5.5e-11 71.6 114 36.0
Lj2A112T40 Lonicera japonica HOM05D006467 ORTHO05D008012 7.2e-11 71.2 114 36.8
Prupe.6G236600 Prunus persica HOM05D006467 ORTHO05D008012 7.2e-11 71.2 116 37.1
Glyma.13G140300 Glycine max HOM05D006467 ORTHO05D008012 9.4e-11 70.9 118 38.1
Ah.15g092380 Amaranthus hybridus HOM05D006467 ORTHO05D008012 1.6e-10 70.1 117 39.3
MELO3C009340.2 Cucumis melo HOM05D006467 ORTHO05D008012 1.6e-10 70.1 117 33.3
Lsat_1_v5_gn_2_109060 Lactuca sativa HOM05D006467 ORTHO05D008012 1.6e-10 70.1 124 33.9
vmacro20032 Vaccinium macrocarpon HOM05D006467 ORTHO05D008012 1.6e-10 70.1 82 42.7
TAR623G0732 Trochodendron aralioides HOM05D006467 ORTHO05D008012 2.1e-10 69.7 117 35.9
FvH4_6g15910 Fragaria vesca HOM05D006467 ORTHO05D008012 2.7e-10 69.3 122 33.6
Gorai.006G166500 Gossypium raimondii HOM05D006467 ORTHO05D008012 2.7e-10 69.3 82 48.8
Solyc09g007800.3 Solanum lycopersicum HOM05D006467 ORTHO05D008012 2.7e-10 69.3 115 37.4
DCAR_009295 Daucus carota HOM05D006467 ORTHO05D008012 3.6e-10 68.9 80 42.5
PGSC0003DMG400021546 Solanum tuberosum HOM05D006467 ORTHO05D008012 3.6e-10 68.9 115 37.4
SGA_v2.0_scaffold40G15542 Striga asiatica HOM05D006467 ORTHO05D008012 3.6e-10 68.9 140 35.7
Dinv37285 Davidia involucrata HOM05D006467 ORTHO05D008012 4.6e-10 68.6 76 46.1
Sed0017827 Sechium edule HOM05D006467 ORTHO05D008012 4.6e-10 68.6 126 34.9
AUR62033514 Chenopodium quinoa HOM05D006467 ORTHO05D008012 6.1e-10 68.2 117 37.6
Eucgr.K03249 Eucalyptus grandis HOM05D006467 ORTHO05D008012 6.1e-10 68.2 84 45.2
MD04G1097300 Malus domestica HOM05D006467 ORTHO05D008012 6.1e-10 68.2 116 37.1
CsaV3_3G035800 Cucumis sativus L. HOM05D006467 ORTHO05D008012 7.9e-10 67.8 117 32.5
Migut.J00532 Erythranthe guttata HOM05D006467 ORTHO05D008012 7.9e-10 67.8 125 34.4
MD12G1118700 Malus domestica HOM05D006467 ORTHO05D008012 7.9e-10 67.8 116 34.5
Sopen09g002640 Solanum pennellii HOM05D006467 ORTHO05D008012 1.4e-09 67.0 115 36.5
EL10Ac7g16554 Beta vulgaris HOM05D006467 ORTHO05D008012 1.8e-09 66.6 125 35.2
ClCG10G020300 Citrullus lanatus HOM05D006467 ORTHO05D008012 5.1e-09 65.1 114 32.5
ATR0048G054 Amborella trichopoda HOM05D006467 ORTHO05D008012 6.7e-09 64.7 112 35.7
AUR62028561 Chenopodium quinoa HOM05D006467 ORTHO05D008012 6.7e-09 64.7 117 35.0
PGR142G2369 Punica granatum HOM05D006467 ORTHO05D008012 6.7e-09 64.7 127 33.1
ECA238G0062 Erigeron canadensis HOM05D006467 ORTHO05D008012 8.8e-09 64.3 130 31.5
Cc06_g03930 Coffea canephora HOM05D006467 ORTHO05D008012 3.3e-08 62.4 104 39.4
Hund20246 Selenicereus undatus HOM05D006467 ORTHO05D008012 4.3e-08 62.0 75 44.0
unitig_27.g25371 Utricularia gibba HOM05D006467 ORTHO05D008012 7.4e-08 61.2 71 43.7


User provided reference genes

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