Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.2e-57 225.3 109 100.0
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.2e-57 225.3 109 100.0
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.2e-57 225.3 109 100.0
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.4e-56 222.6 108 98.1
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.2e-52 208.8 108 90.7
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.7e-52 208.0 108 90.7
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 2.8e-44 181.8 108 79.6
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 3.5e-26 121.7 102 54.9
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.7e-25 119.4 108 56.5
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 2.5e-24 115.5 109 54.1
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 3.3e-24 115.2 103 55.3
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 9.5e-24 113.6 109 55.0
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 9.5e-24 113.6 109 55.0
Zm00001eb353660 Zea mays HOM05D003749 ORTHO05D004421 9.5e-24 113.6 78 65.4
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 1.2e-23 113.2 109 53.2
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 1.2e-23 113.2 103 54.4
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 2.1e-23 112.5 103 56.3
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 2.8e-23 112.1 109 54.1
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 2.8e-23 112.1 109 54.1
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 3.6e-23 111.7 109 54.1
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 3.6e-23 111.7 109 54.1
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 3.6e-23 111.7 109 54.1
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 4.7e-23 111.3 109 54.1
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 4.7e-23 111.3 109 54.1
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 4.7e-23 111.3 109 52.3
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 8.0e-23 110.5 109 51.4
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 8.0e-23 110.5 109 52.3
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 8.0e-23 110.5 108 50.0
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 8.0e-23 110.5 109 52.3
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.0e-22 110.2 109 53.2
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 1.0e-22 110.2 103 54.4
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 1.8e-22 109.4 109 51.4
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 1.8e-22 109.4 109 51.4
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 2.3e-22 109.0 109 52.3
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 2.3e-22 109.0 109 52.3
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 3.0e-22 108.6 109 51.4
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 3.0e-22 108.6 109 50.5
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 3.0e-22 108.6 104 53.8
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 4.0e-22 108.2 109 54.1
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 4.0e-22 108.2 105 49.5
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 4.0e-22 108.2 103 52.4
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 5.2e-22 107.8 109 52.3
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 6.8e-22 107.5 103 53.4
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 8.9e-22 107.1 103 53.4
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 8.9e-22 107.1 109 50.5
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 8.9e-22 107.1 103 52.4
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 8.9e-22 107.1 103 52.4
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 8.9e-22 107.1 104 53.8
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 8.9e-22 107.1 104 53.8
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 8.9e-22 107.1 103 53.4
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.2e-21 106.7 102 53.9
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.2e-21 106.7 106 51.9
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 1.2e-21 106.7 103 52.4
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 1.5e-21 106.3 104 51.9
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.5e-21 106.3 109 49.5
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 2.0e-21 105.9 109 51.4
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 2.0e-21 105.9 105 49.5
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.0e-21 105.9 108 46.3
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 2.0e-21 105.9 99 53.5
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 2.6e-21 105.5 103 52.4
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 2.6e-21 105.5 104 51.9
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 2.6e-21 105.5 103 51.5
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 2.6e-21 105.5 109 48.6
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 3.4e-21 105.1 103 51.5
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 3.4e-21 105.1 103 51.5
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 4.4e-21 104.8 103 53.4
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 4.4e-21 104.8 103 53.4
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 5.7e-21 104.4 103 52.4
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 5.7e-21 104.4 109 51.4
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.7e-21 104.4 109 49.5
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.7e-21 104.4 109 49.5
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 5.7e-21 104.4 109 49.5
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 5.7e-21 104.4 109 49.5
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 7.5e-21 104.0 103 51.5
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 9.8e-21 103.6 109 49.5
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 9.8e-21 103.6 109 49.5
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 9.8e-21 103.6 109 49.5
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 9.8e-21 103.6 109 49.5
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 9.8e-21 103.6 109 49.5
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 9.8e-21 103.6 109 49.5
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 1.3e-20 103.2 109 48.6
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 1.3e-20 103.2 109 49.5
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 1.3e-20 103.2 109 49.5
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 1.3e-20 103.2 109 49.5
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 1.3e-20 103.2 109 49.5
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 1.3e-20 103.2 109 49.5
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 1.7e-20 102.8 109 49.5
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.7e-20 102.8 109 51.4
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.7e-20 102.8 97 51.5
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 1.7e-20 102.8 110 51.8
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 2.2e-20 102.4 103 49.5
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 2.2e-20 102.4 109 47.7
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 2.2e-20 102.4 103 49.5
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 2.2e-20 102.4 103 51.5
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 2.2e-20 102.4 109 50.5
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.2e-20 102.4 109 50.5
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.8e-20 102.1 103 50.5
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.8e-20 102.1 109 51.4
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.8e-20 102.1 109 49.5
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 3.7e-20 101.7 109 48.6
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 3.7e-20 101.7 109 48.6
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 3.7e-20 101.7 109 48.6
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 3.7e-20 101.7 109 48.6
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 3.7e-20 101.7 109 48.6
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 3.7e-20 101.7 103 49.5
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 3.7e-20 101.7 103 49.5
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 3.7e-20 101.7 103 49.5
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 3.7e-20 101.7 105 48.6
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 3.7e-20 101.7 99 51.5
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 3.7e-20 101.7 109 51.4
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 4.9e-20 101.3 109 48.6
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 6.3e-20 100.9 109 48.6
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 6.3e-20 100.9 109 48.6
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 6.3e-20 100.9 109 48.6
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 6.3e-20 100.9 109 48.6
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 6.3e-20 100.9 103 50.5
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 6.3e-20 100.9 109 48.6
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 6.3e-20 100.9 103 50.5
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 8.3e-20 100.5 109 47.7
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 8.3e-20 100.5 109 51.4
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 8.3e-20 100.5 97 48.5
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.1e-19 100.1 109 50.5
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.4e-19 99.8 103 49.5
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.4e-19 99.8 100 53.0
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.4e-19 99.8 100 53.0
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 1.4e-19 99.8 103 50.5
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 1.8e-19 99.4 93 51.6
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 1.8e-19 99.4 105 49.5
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.8e-19 99.4 109 49.5
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.8e-19 99.4 99 47.5
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.8e-19 99.4 99 47.5
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.4e-19 99.0 109 50.5
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 2.4e-19 99.0 102 48.0
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 3.1e-19 98.6 103 51.5
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 7.0e-19 97.4 109 46.8
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 7.0e-19 97.4 104 51.0
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 9.2e-19 97.1 103 48.5
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 1.2e-18 96.7 108 46.3
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 3.5e-18 95.1 103 46.6
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.5e-18 95.1 97 46.4
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 3.5e-18 95.1 98 46.9
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 5.9e-18 94.4 106 46.2
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 7.8e-18 94.0 109 45.9
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 1.0e-17 93.6 103 50.5
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 1.3e-17 93.2 102 51.0
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 2.3e-17 92.4 93 49.5
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 2.3e-17 92.4 82 52.4
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 2.9e-17 92.0 109 44.0
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 7.3e-16 87.4 99 42.4
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 7.3e-16 87.4 108 42.6
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 8.0e-15 84.0 160 35.0
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 8.0e-15 84.0 160 35.0
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.0e-14 83.6 109 46.8
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 1.4e-14 83.2 58 63.8
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 1.4e-14 83.2 58 63.8
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 1.8e-14 82.8 98 44.9
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 3.4e-13 78.6 109 41.3
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 7.0e-11 70.9 89 43.8
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 1.6e-10 69.7 84 42.9
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 1.0e-09 67.0 95 40.0
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.3e-09 66.6 39 76.9
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.3e-09 66.6 103 38.8
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 3.9e-09 65.1 33 84.8
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 5.0e-09 64.7 109 39.4
Zm00001eb413440 Zea mays HOM05D000646 ORTHO05D000607 6.6e-09 64.3 32 87.5
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 1.1e-08 63.5 92 37.0
Zm00001eb371620 Zea mays HOM05D000283 ORTHO05D000358 1.1e-08 63.5 32 87.5
Zm00001eb370250 Zea mays HOM05D000283 ORTHO05D000358 1.2e-07 60.1 34 76.5
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 8.0e-07 57.4 50 56.0
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 1.8e-06 56.2 32 71.9
Zm00001eb303870 Zea mays HOM05D000646 ORTHO05D441501 1.8e-06 56.2 29 86.2
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 3.1e-06 55.5 33 69.7
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 8.9e-06 53.9 109 35.8


User provided reference genes

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