Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0784900 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D007570 2.0e-86 322.4 159 100.0
Zm00001eb025350 Zea mays HOM05D002897 ORTHO05D007570 5.7e-54 214.5 162 69.8
CDE12G0398 Ceratophyllum demersum HOM05D002897 ORTHO05D007570 1.1e-33 147.1 114 63.2
Nn1g01968 Nelumbo nucifera HOM05D002897 ORTHO05D007570 2.5e-33 146.0 108 65.7
ATR0829G043 Amborella trichopoda HOM05D002897 ORTHO05D007570 1.6e-32 143.3 109 64.2
Eucgr.K00770 Eucalyptus grandis HOM05D002897 ORTHO05D007570 1.6e-32 143.3 108 63.9
GSVIVG01030485001 Vitis vinifera HOM05D002897 ORTHO05D007570 1.6e-32 143.3 108 64.8
PGR142G0275 Punica granatum HOM05D002897 ORTHO05D007570 2.1e-32 142.9 108 63.0
HanXRQChr03g0075631 Helianthus annuus HOM05D002897 ORTHO05D007570 2.8e-32 142.5 109 61.5
Prupe.3G212500 Prunus persica HOM05D002897 ORTHO05D007570 2.8e-32 142.5 108 62.0
TAR624G0083 Trochodendron aralioides HOM05D002897 ORTHO05D007570 2.8e-32 142.5 113 62.8
DCAR_019749 Daucus carota HOM05D002897 ORTHO05D007570 3.6e-32 142.1 107 62.6
Lsat_1_v5_gn_9_106701 Lactuca sativa HOM05D002897 ORTHO05D007570 4.7e-32 141.7 116 59.5
CsaV3_7G003350 Cucumis sativus L. HOM05D002897 ORTHO05D007570 6.2e-32 141.4 110 61.8
Sed0010664 Sechium edule HOM05D002897 ORTHO05D007570 6.2e-32 141.4 108 63.0
ECA240G2609 Erigeron canadensis HOM05D002897 ORTHO05D007570 1.1e-31 140.6 109 60.6
Cfa014330 Carpinus fangiana HOM05D002897 ORTHO05D007570 1.4e-31 140.2 108 61.1
MD09G1112200 Malus domestica HOM05D002897 ORTHO05D007570 1.4e-31 140.2 108 61.1
CANSAT64G1239 Cannabis sativa HOM05D002897 ORTHO05D007570 1.8e-31 139.8 108 61.1
Cpa.g.sc132.6 Carica papaya HOM05D002897 ORTHO05D007570 1.8e-31 139.8 108 61.1
TWI18G1070 Tripterygium wilfordii HOM05D002897 ORTHO05D007570 1.8e-31 139.8 108 63.0
Cc05_g03210 Coffea canephora HOM05D002897 ORTHO05D007570 2.3e-31 139.4 108 61.1
Oeu031218.1 Olea europaea HOM05D002897 ORTHO05D007570 2.3e-31 139.4 127 56.7
TWI75G1337 Tripterygium wilfordii HOM05D002897 ORTHO05D007570 2.3e-31 139.4 148 52.0
RcHm_v2.0_Chr2g0158451 Rosa chinensis HOM05D002897 ORTHO05D007570 3.1e-31 139.0 108 61.1
Peaxi162Scf00921g00013 Petunia axillaris HOM05D002897 ORTHO05D007570 4.0e-31 138.7 108 62.0
CSS0041861 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D007570 5.2e-31 138.3 108 60.2
Ciclev10017105m.g Citrus clementina HOM05D002897 ORTHO05D007570 5.2e-31 138.3 108 62.0
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 5.2e-31 138.3 108 63.0
Gohir.A07G186700 Gossypium hirsutum HOM05D002897 ORTHO05D007570 5.2e-31 138.3 133 54.9
Sc21g0001180 Simmondsia chinensis HOM05D002897 ORTHO05D007570 5.2e-31 138.3 108 61.1
Solyc07g049230.1 Solanum lycopersicum HOM05D002897 ORTHO05D007570 5.2e-31 138.3 113 59.3
Sopen07g025240 Solanum pennellii HOM05D002897 ORTHO05D007570 5.2e-31 138.3 113 59.3
ClCG02G002160 Citrullus lanatus HOM05D002897 ORTHO05D007570 6.8e-31 137.9 108 60.2
Manes.13G067600 Manihot esculenta HOM05D002897 ORTHO05D007570 6.8e-31 137.9 108 62.0
Manes.13G067625 Manihot esculenta HOM05D002897 ORTHO05D007570 6.8e-31 137.9 108 62.0
PSO782G2696 Papaver somniferum HOM05D002897 ORTHO05D007570 6.8e-31 137.9 109 60.6
MELO3C018840.2 Cucumis melo HOM05D002897 ORTHO05D007570 8.9e-31 137.5 110 60.9
Potri.014G156900 Populus trichocarpa HOM05D002897 ORTHO05D007570 8.9e-31 137.5 110 60.9
FAN14G2228 Fragaria x ananassa HOM05D002897 ORTHO05D007570 1.2e-30 137.1 108 60.2
SGA_v2.0_scaffold49G18347 Striga asiatica HOM05D002897 ORTHO05D007570 1.2e-30 137.1 108 61.1
THA.LOC104826139 Tarenaya hassleriana HOM05D002897 ORTHO05D007570 1.5e-30 136.7 108 62.0
CAN.G664.11 Capsicum annuum HOM05D002897 ORTHO05D007570 2.0e-30 136.3 113 59.3
CiPaw.03G157100 Carya illinoinensis HOM05D002897 ORTHO05D007570 2.0e-30 136.3 108 60.2
Ca_03579_v3 Cicer arietinum L. HOM05D002897 ORTHO05D007570 2.0e-30 136.3 108 58.3
Haze_12785 Corylus avellana HOM05D002897 ORTHO05D007570 2.0e-30 136.3 108 59.3
FAN02G3971 Fragaria x ananassa HOM05D002897 ORTHO05D007570 2.0e-30 136.3 108 60.2
PSO566G0275 Papaver somniferum HOM05D002897 ORTHO05D007570 2.0e-30 136.3 109 59.6
Hund20232 Selenicereus undatus HOM05D002897 ORTHO05D007570 2.0e-30 136.3 108 63.0
Thecc.01G180200 Theobroma cacao HOM05D002897 ORTHO05D007570 2.0e-30 136.3 108 62.0
Gohir.D07G193200 Gossypium hirsutum HOM05D002897 ORTHO05D007570 2.6e-30 136.0 133 54.1
Gorai.001G216300 Gossypium raimondii HOM05D002897 ORTHO05D007570 2.6e-30 136.0 133 54.1
Lj1P779T15 Lonicera japonica HOM05D002897 ORTHO05D007570 2.6e-30 136.0 107 61.7
PGSC0003DMG400000672 Solanum tuberosum HOM05D002897 ORTHO05D007570 3.4e-30 135.6 125 53.6
arahy.Tifrunner.gnm1.ann1.0I3WMA Arachis hypogaea HOM05D002897 ORTHO05D007570 4.4e-30 135.2 108 58.3
arahy.Tifrunner.gnm1.ann1.P1R172 Arachis hypogaea HOM05D002897 ORTHO05D007570 4.4e-30 135.2 108 58.3
TPR.G31174 Trifolium pratense HOM05D002897 ORTHO05D007570 4.4e-30 135.2 138 50.7
Atru.chr6.3237 Acer truncatum HOM05D002897 ORTHO05D007570 5.8e-30 134.8 108 60.2
Aqoxy7G01529 Aquilegia oxysepala HOM05D002897 ORTHO05D007570 5.8e-30 134.8 108 59.3
Carub.0004s1398 Capsella rubella HOM05D002897 ORTHO05D007570 5.8e-30 134.8 113 58.4
MD17G1102300 Malus domestica HOM05D002897 ORTHO05D007570 5.8e-30 134.8 108 58.3
QL08p031156 Quercus lobata HOM05D002897 ORTHO05D007570 5.8e-30 134.8 108 59.3
Sabra14G0118700 Salix brachista HOM05D002897 ORTHO05D007570 5.8e-30 134.8 108 59.3
MSTRG.12280 Avicennia marina HOM05D002897 ORTHO05D007570 7.6e-30 134.4 108 59.3
BcaC02g07907 Brassica carinata HOM05D002897 ORTHO05D007570 7.6e-30 134.4 107 59.8
Actinidia09728 Actinidia chinensis HOM05D002897 ORTHO05D007570 9.9e-30 134.0 108 58.3
EL10Ac3g06311 Beta vulgaris HOM05D002897 ORTHO05D007570 9.9e-30 134.0 108 60.2
Thhalv10017400m.g Eutrema salsugineum HOM05D002897 ORTHO05D007570 1.3e-29 133.7 113 58.4
Sp4g14970 Schrenkiella parvula HOM05D002897 ORTHO05D007570 1.3e-29 133.7 113 58.4
A05p12950 Brassica napus HOM05D002897 ORTHO05D007570 1.7e-29 133.3 109 58.7
BraA05t20235Z Brassica rapa HOM05D002897 ORTHO05D007570 1.7e-29 133.3 109 58.7
Duzib138G1435 Durio zibethinus HOM05D002897 ORTHO05D007570 1.7e-29 133.3 108 60.2
Nitab4.5_0000482g0100 Nicotiana tabacum HOM05D002897 ORTHO05D007570 1.7e-29 133.3 107 60.7
Nitab4.5_0003449g0090 Nicotiana tabacum HOM05D002897 ORTHO05D007570 1.7e-29 133.3 107 60.7
SalBow1G7922 Salvia bowleyana HOM05D002897 ORTHO05D007570 1.7e-29 133.3 108 61.1
AL4G28050 Arabidopsis lyrata HOM05D002897 ORTHO05D007570 2.2e-29 132.9 108 59.3
BcaB02g10455 Brassica carinata HOM05D002897 ORTHO05D007570 2.2e-29 132.9 107 60.7
BcaB02g10485 Brassica carinata HOM05D002897 ORTHO05D007570 2.2e-29 132.9 107 60.7
C04p62130 Brassica napus HOM05D002897 ORTHO05D007570 2.2e-29 132.9 107 60.7
COL.COLO4_21856 Corchorus olitorius HOM05D002897 ORTHO05D007570 2.2e-29 132.9 139 52.5
SalBow1G1468 Salvia bowleyana HOM05D002897 ORTHO05D007570 2.2e-29 132.9 108 61.1
BcaB06g28612 Brassica carinata HOM05D002897 ORTHO05D007570 2.9e-29 132.5 107 58.9
BcaC02g11346 Brassica carinata HOM05D002897 ORTHO05D007570 2.9e-29 132.5 107 58.9
A05p13340 Brassica napus HOM05D002897 ORTHO05D007570 2.9e-29 132.5 107 58.9
C04p17040 Brassica napus HOM05D002897 ORTHO05D007570 2.9e-29 132.5 107 58.9
BolC4t23256H Brassica oleracea HOM05D002897 ORTHO05D007570 2.9e-29 132.5 107 58.9
BolC4t27692H Brassica oleracea HOM05D002897 ORTHO05D007570 2.9e-29 132.5 107 58.9
BraA04t18016Z Brassica rapa HOM05D002897 ORTHO05D007570 2.9e-29 132.5 107 58.9
BraA05t20273Z Brassica rapa HOM05D002897 ORTHO05D007570 2.9e-29 132.5 107 58.9
AUR62030035 Chenopodium quinoa HOM05D002897 ORTHO05D007570 2.9e-29 132.5 110 57.3
FvH4_6g42600 Fragaria vesca HOM05D002897 ORTHO05D007570 2.9e-29 132.5 108 59.3
Glyma.02G270400 Glycine max HOM05D002897 ORTHO05D007570 2.9e-29 132.5 110 58.2
Glyma.14G046700 Glycine max HOM05D002897 ORTHO05D007570 2.9e-29 132.5 110 58.2
AT2G32180 Arabidopsis thaliana HOM05D002897 ORTHO05D007570 4.9e-29 131.7 108 59.3
AT2G32650 Arabidopsis thaliana HOM05D002897 ORTHO05D007570 4.9e-29 131.7 108 59.3
Actinidia13739 Actinidia chinensis HOM05D002897 ORTHO05D007570 6.4e-29 131.3 108 59.3
CARHR126500 Cardamine hirsuta HOM05D002897 ORTHO05D007570 6.4e-29 131.3 108 58.3
Medtr1g086000 Medicago truncatula HOM05D002897 ORTHO05D007570 6.4e-29 131.3 108 57.4
AUR62006482 Chenopodium quinoa HOM05D002897 ORTHO05D007570 8.4e-29 131.0 108 57.4
LjContig00564g0007535 Lotus japonicus HOM05D002897 ORTHO05D007570 8.4e-29 131.0 108 56.5
LjContig00564g0010319 Lotus japonicus HOM05D002897 ORTHO05D007570 8.4e-29 131.0 108 56.5
Ah.13g074350 Amaranthus hybridus HOM05D002897 ORTHO05D007570 1.1e-28 130.6 108 59.3
AUR62002619 Chenopodium quinoa HOM05D002897 ORTHO05D007570 1.1e-28 130.6 108 57.4
Phvul.008G211600 Phaseolus vulgaris HOM05D002897 ORTHO05D007570 1.1e-28 130.6 108 60.2
Migut.H01236 Erythranthe guttata HOM05D002897 ORTHO05D007570 1.4e-28 130.2 108 58.3
Psat6g158840 Pisum sativum HOM05D002897 ORTHO05D007570 1.9e-28 129.8 108 56.5
AUR62022566 Chenopodium quinoa HOM05D002897 ORTHO05D007570 2.4e-28 129.4 108 57.4
Aa31LG5G4700 Aethionema arabicum HOM05D002897 ORTHO05D007570 3.2e-28 129.0 106 58.5
VMungo0647G0292 Vigna mungo HOM05D002897 ORTHO05D007570 3.2e-28 129.0 108 56.5
unitig_62.g23231 Utricularia gibba HOM05D002897 ORTHO05D007570 4.1e-28 128.6 147 49.7
Lalb_Chr10g0105691 Lupinus albus HOM05D002897 ORTHO05D007570 2.1e-27 126.3 108 57.4
SEGI_35464 Sequoiadendron giganteum HOM05D002897 ORTHO05D007570 1.0e-26 124.0 109 56.9
vmacro12175 Vaccinium macrocarpon HOM05D002897 ORTHO05D007570 3.0e-26 122.5 130 50.0
Rhsim06G0166200 Rhododendron simsii HOM05D002897 ORTHO05D007570 5.1e-26 121.7 126 50.0
SMO137G0344 Selaginella moellendorffii HOM05D002897 ORTHO05D007570 3.6e-24 115.5 108 52.8
Pp3c20_2790 Physcomitrium patens HOM05D002897 ORTHO05D007570 9.9e-22 107.5 108 49.1
A04p25050 Brassica napus HOM05D002897 ORTHO05D007570 5.1e-18 95.1 89 52.8
BolC4t23293H Brassica oleracea HOM05D002897 ORTHO05D007570 8.7e-18 94.4 84 53.6
BcaC02g08731 Brassica carinata HOM05D002897 ORTHO05D007570 9.6e-17 90.9 97 47.4
Mapoly0068s0043 Marchantia polymorpha HOM05D002897 ORTHO05D007570 2.1e-16 89.7 117 42.7
FAN05G4540 Fragaria x ananassa HOM05D002897 ORTHO05D007570 3.1e-15 85.9 102 48.0
CBR_g4877 Chara braunii HOM05D002897 ORTHO05D007570 2.2e-13 79.7 111 41.4
FAN09G3117 Fragaria x ananassa HOM05D002897 ORTHO05D007570 1.6e-11 73.6 62 56.5
BcaB06g28610 Brassica carinata HOM05D002897 ORTHO05D007570 2.1e-11 73.2 64 54.7
BcaB06g28611 Brassica carinata HOM05D002897 ORTHO05D007570 2.1e-11 73.2 64 54.7
Lalb_Chr04g0249921 Lupinus albus HOM05D002897 ORTHO05D007570 2.1e-08 63.2 111 36.9
BolC4t26713H Brassica oleracea HOM05D002897 ORTHO05D007570 1.4e-07 60.5 43 58.1
C04p17460 Brassica napus HOM05D002897 ORTHO05D007570 3.1e-07 59.3 51 52.9


User provided reference genes

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