Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 1.2e-229 799.7 464 100.0
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 7.5e-179 630.9 492 72.4
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 7.4e-134 481.5 462 55.6
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.7e-130 470.3 479 53.9
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 2.2e-130 469.9 460 55.7
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 4.9e-130 468.8 463 54.9
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 1.2e-128 464.2 461 54.0
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 1.0e-127 461.1 466 54.3
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 1.0e-127 461.1 464 53.2
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 2.3e-127 459.9 462 53.7
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 3.0e-127 459.5 461 54.7
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 8.7e-127 458.0 464 54.3
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 1.9e-126 456.8 460 54.1
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 1.9e-126 456.8 460 54.1
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.9e-126 456.8 458 53.9
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 3.3e-126 456.1 466 59.2
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 9.6e-126 454.5 459 54.0
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 1.3e-125 454.1 470 52.8
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.8e-125 453.0 458 53.7
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 3.7e-125 452.6 461 53.1
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 4.8e-125 452.2 466 58.6
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 8.1e-125 451.4 463 52.1
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.1e-124 451.1 458 53.3
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 1.8e-124 450.3 462 54.1
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 2.4e-124 449.9 465 54.2
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 2.4e-124 449.9 461 53.4
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 9.0e-124 448.0 463 52.9
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 1.2e-123 447.6 461 54.0
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 1.5e-123 447.2 461 53.8
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 1.5e-123 447.2 463 53.8
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 1.5e-123 447.2 457 53.0
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 3.4e-123 446.0 462 54.1
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 4.5e-123 445.7 459 53.2
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 7.6e-123 444.9 464 53.4
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 1.7e-122 443.7 458 53.5
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 3.8e-122 442.6 461 51.6
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 8.4e-122 441.4 459 52.5
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 1.4e-121 440.7 473 53.7
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 1.9e-121 440.3 459 53.2
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 1.9e-121 440.3 459 52.7
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 1.9e-121 440.3 485 50.5
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 2.5e-121 439.9 458 52.0
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 3.2e-121 439.5 461 52.1
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 7.1e-121 438.3 480 51.5
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 9.3e-121 438.0 473 53.3
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 2.7e-120 436.4 458 53.3
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 4.6e-120 435.6 463 52.7
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 7.9e-120 434.9 493 50.3
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 1.0e-119 434.5 458 52.2
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 1.3e-119 434.1 461 52.3
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 1.3e-119 434.1 462 51.5
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 1.3e-119 434.1 463 52.1
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 3.9e-119 432.6 467 52.2
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 6.7e-119 431.8 463 51.6
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 1.1e-118 431.0 465 51.4
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 1.1e-118 431.0 492 50.2
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 1.1e-118 431.0 464 51.3
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 2.5e-118 429.9 463 52.1
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 3.3e-118 429.5 481 50.9
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 1.3e-117 427.6 492 49.0
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 8.2e-117 424.9 461 51.4
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 8.2e-117 424.9 464 52.2
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 8.2e-117 424.9 463 51.8
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 3.1e-116 422.9 463 50.8
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 3.1e-116 422.9 460 50.7
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 4.1e-116 422.5 463 50.5
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 4.1e-116 422.5 461 51.8
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 9.0e-116 421.4 462 50.9
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 2.0e-115 420.2 465 50.1
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 3.4e-115 419.5 460 51.1
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 5.9e-115 418.7 462 50.6
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 1.1e-113 414.5 463 49.0
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 1.4e-113 414.1 467 54.6
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 1.9e-113 413.7 463 50.1
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 6.1e-112 408.7 473 47.4
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 6.1e-112 408.7 461 49.0
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 7.9e-112 408.3 462 50.2
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 1.0e-111 407.9 459 49.0
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 9.7e-110 401.4 464 48.3
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 1.2e-107 394.4 410 51.2
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 1.5e-107 394.0 458 49.1
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 2.0e-107 393.7 478 47.3
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 1.7e-106 390.6 427 49.2
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 1.4e-105 387.5 459 49.2
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.1e-104 383.6 426 50.7
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 1.8e-103 380.6 462 46.8
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 6.7e-103 378.6 414 51.0
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 1.1e-102 377.9 370 53.5
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 3.7e-101 372.9 482 46.9
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 5.3e-100 369.0 420 49.5
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 3.6e-96 356.3 483 42.4
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 4.7e-96 355.9 322 57.5
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 5.1e-95 352.4 461 44.5
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 5.1e-95 352.4 401 49.4
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 5.2e-87 325.9 317 53.9
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 3.1e-84 316.6 359 49.3
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 1.2e-83 314.7 317 53.6
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 5.9e-83 312.4 461 41.2
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 1.4e-79 301.2 314 52.2
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.3e-77 294.7 507 38.5
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 1.2e-75 288.1 317 50.5
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 1.2e-75 288.1 322 52.2
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 1.0e-71 275.0 485 37.5
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 6.8e-71 272.3 362 44.2
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.3e-69 268.1 336 44.0
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 5.2e-63 246.1 267 52.8
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 1.1e-60 238.4 423 38.1
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 4.1e-60 236.5 293 49.1
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 2.6e-54 217.2 220 52.3
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 5.4e-52 209.5 384 38.3
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 1.2e-43 181.8 485 30.7
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.8e-31 141.4 128 58.6
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 6.9e-31 139.4 496 28.4
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 4.9e-29 133.3 500 30.4
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 1.4e-23 115.2 194 36.1
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 2.4e-23 114.4 141 48.2
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 4.0e-23 113.6 118 54.2
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 7.9e-19 99.4 397 27.2
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 1.3e-18 98.6 79 60.8
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-18 97.8 425 23.5
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 2.0e-14 84.7 100 49.0
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 2.0e-14 84.7 100 48.0
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 3.8e-13 80.5 73 54.8
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 4.9e-13 80.1 73 57.5
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 1.4e-12 78.6 74 56.8
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 1.2e-06 58.9 142 33.8


User provided reference genes

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