Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 2.1e-103 379.4 250 100.0
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 3.5e-74 282.3 183 79.8
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 3.1e-70 269.2 255 62.4
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 3.1e-54 216.1 196 62.2
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 1.5e-53 213.8 257 51.4
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 2.6e-53 213.0 258 55.8
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 2.2e-52 209.9 185 63.8
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 2.2e-52 209.9 179 63.1
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 1.1e-51 207.6 257 56.0
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.4e-51 207.2 183 62.8
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 2.5e-51 206.5 261 50.6
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 2.5e-51 206.5 258 55.0
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 2.5e-51 206.5 258 55.0
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 3.2e-51 206.1 268 48.9
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 4.2e-51 205.7 182 62.1
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 4.2e-51 205.7 182 62.1
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 7.2e-51 204.9 182 62.6
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 7.2e-51 204.9 186 62.9
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 9.3e-51 204.5 259 49.4
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 2.7e-50 203.0 193 60.1
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 3.6e-50 202.6 257 51.0
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 4.6e-50 202.2 187 62.0
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 6.1e-50 201.8 259 50.6
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 7.9e-50 201.4 257 55.3
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 7.9e-50 201.4 182 63.7
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 7.9e-50 201.4 259 51.0
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 1.3e-49 200.7 186 61.3
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 2.3e-49 199.9 183 61.7
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.3e-49 199.9 265 47.9
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 3.0e-49 199.5 184 61.4
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 6.7e-49 198.4 186 60.8
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 1.1e-48 197.6 188 62.2
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 1.1e-48 197.6 193 59.6
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 1.1e-48 197.6 187 61.5
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 1.9e-48 196.8 179 62.0
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 4.3e-48 195.7 181 59.1
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 5.7e-48 195.3 186 60.8
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 5.7e-48 195.3 185 61.6
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 7.4e-48 194.9 192 56.8
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 9.7e-48 194.5 267 46.1
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 9.7e-48 194.5 255 51.0
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 1.6e-47 193.7 189 58.2
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 1.6e-47 193.7 189 58.2
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 1.6e-47 193.7 189 58.7
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 2.2e-47 193.4 257 49.0
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 4.8e-47 192.2 182 61.5
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 4.8e-47 192.2 185 60.5
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 6.3e-47 191.8 266 45.9
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 8.2e-47 191.4 185 59.5
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 1.8e-46 190.3 185 59.5
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 2.4e-46 189.9 254 49.2
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 3.1e-46 189.5 175 62.9
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 3.1e-46 189.5 193 57.5
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 4.1e-46 189.1 255 54.9
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 4.1e-46 189.1 189 58.2
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 6.9e-46 188.3 271 46.9
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 9.1e-46 188.0 188 58.0
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.2e-45 187.6 183 59.0
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 1.5e-45 187.2 194 56.2
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 1.5e-45 187.2 256 54.7
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 1.5e-45 187.2 255 54.5
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 1.5e-45 187.2 267 45.3
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.5e-45 187.2 188 56.9
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 2.0e-45 186.8 262 46.6
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 2.6e-45 186.4 256 48.4
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 2.6e-45 186.4 180 61.7
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 2.6e-45 186.4 188 56.4
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 3.4e-45 186.0 181 56.9
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 3.4e-45 186.0 180 58.9
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 4.5e-45 185.7 208 54.8
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 4.5e-45 185.7 259 46.3
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 5.9e-45 185.3 185 56.8
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 7.7e-45 184.9 255 47.8
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 7.7e-45 184.9 180 61.1
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 7.7e-45 184.9 251 54.2
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 7.7e-45 184.9 254 48.8
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 7.7e-45 184.9 207 56.5
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 7.7e-45 184.9 184 57.6
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 1.0e-44 184.5 255 48.2
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 1.0e-44 184.5 255 47.5
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 1.3e-44 184.1 202 55.0
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 1.7e-44 183.7 198 56.6
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 2.2e-44 183.3 268 45.5
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 2.2e-44 183.3 185 57.8
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 6.5e-44 181.8 271 46.9
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 6.5e-44 181.8 180 61.1
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 6.5e-44 181.8 192 54.7
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 1.1e-43 181.0 180 61.1
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 1.1e-43 181.0 180 61.1
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 5.5e-43 178.7 189 57.1
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 9.4e-43 177.9 180 60.0
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 1.2e-42 177.6 180 60.0
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 4.6e-42 175.6 231 49.4
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 6.1e-42 175.3 180 59.4
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 1.0e-41 174.5 178 57.3
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 3.0e-41 172.9 182 57.1
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 3.9e-41 172.6 182 54.9
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 7.4e-40 168.3 180 58.3
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 1.4e-38 164.1 193 53.9
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 1.4e-38 164.1 178 56.7
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 2.4e-38 163.3 176 55.7
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 1.5e-37 160.6 181 51.4
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 1.5e-37 160.6 177 57.1
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 4.5e-37 159.1 177 56.5
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 5.9e-37 158.7 216 49.1
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 2.2e-36 156.8 129 64.3
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.2e-36 156.8 138 63.0
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 3.8e-36 156.0 135 62.2
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.1e-35 154.5 138 62.3
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 9.4e-35 151.4 136 61.8
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 1.0e-33 147.9 250 42.4
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 9.7e-32 141.4 256 40.6
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 1.7e-31 140.6 201 46.3
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 3.7e-31 139.4 181 50.8
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 4.1e-30 136.0 144 54.2
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 3.5e-29 132.9 120 60.8
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 1.7e-28 130.6 123 60.2
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 3.7e-23 112.8 190 44.7
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 1.2e-21 107.8 72 75.0
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 1.6e-21 107.5 73 75.3
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 7.2e-19 98.6 219 35.2
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 4.1e-14 82.8 182 36.3
Zm00001eb095680 Zea mays HOM05D005104 ORTHO05D006614 3.5e-13 79.7 53 73.6
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 4.5e-13 79.3 193 34.7
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 6.5e-12 75.5 256 29.3
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 7.2e-11 72.0 116 44.8
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 1.4e-09 67.8 84 48.8
Cre12.g509300 Chlamydomonas reinhardtii HOM05D005104 ORTHO05D006614 2.3e-09 67.0 200 32.0


User provided reference genes

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