Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 2.8e-97 358.6 182 100.0
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 5.9e-87 324.3 181 89.5
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.5e-85 319.7 181 87.3
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 3.7e-65 251.9 173 69.9
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 4.9e-65 251.5 172 72.7
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.1e-64 250.4 176 68.8
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.8e-64 249.6 178 69.1
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 2.4e-64 249.2 182 69.2
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 2.0e-63 246.1 181 66.3
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 4.5e-63 245.0 186 66.1
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.0e-62 243.8 184 65.8
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.3e-62 243.4 175 69.1
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 1.7e-62 243.0 175 67.4
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 2.3e-62 242.7 175 65.7
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 2.9e-62 242.3 180 67.2
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.9e-62 242.3 183 66.7
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 3.8e-62 241.9 177 66.7
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 1.5e-61 240.0 176 66.5
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.5e-61 240.0 176 66.5
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.5e-61 240.0 177 65.5
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 1.5e-61 240.0 177 65.0
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.5e-61 240.0 176 67.0
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 4.3e-61 238.4 171 69.6
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 5.6e-61 238.0 178 67.4
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 5.6e-61 238.0 176 65.9
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 7.3e-61 237.7 176 65.9
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 7.3e-61 237.7 175 66.3
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 7.3e-61 237.7 177 65.5
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 7.3e-61 237.7 182 67.6
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 2.8e-60 235.7 178 68.0
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 3.6e-60 235.3 170 68.2
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 4.7e-60 235.0 180 62.8
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 8.0e-60 234.2 176 65.3
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 8.0e-60 234.2 174 65.5
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.0e-59 233.8 181 64.1
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 1.4e-59 233.4 187 64.2
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.8e-59 233.0 176 62.5
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.8e-59 233.0 175 65.7
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 4.0e-59 231.9 187 63.6
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 6.8e-59 231.1 175 64.6
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 8.9e-59 230.7 182 62.6
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 8.9e-59 230.7 175 62.3
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.5e-58 229.9 170 62.9
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 1.5e-58 229.9 189 60.8
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 2.0e-58 229.6 162 70.4
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 2.9e-57 225.7 183 62.8
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 4.9e-57 224.9 177 63.8
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 8.3e-57 224.2 174 62.6
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.4e-56 223.4 172 64.5
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 2.4e-56 222.6 182 62.1
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 2.4e-56 222.6 181 62.4
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.2e-56 222.2 170 61.2
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 3.2e-56 222.2 211 55.5
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 5.4e-56 221.5 168 63.1
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 7.0e-56 221.1 171 63.2
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.2e-55 220.3 163 68.1
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 7.8e-55 217.6 171 63.7
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.3e-54 216.9 239 50.6
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.1e-53 213.8 189 59.8
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 1.5e-53 213.4 174 59.2
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.5e-53 212.6 175 61.7
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.6e-53 211.5 173 59.0
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-52 210.3 163 59.5
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 1.6e-52 209.9 174 64.4
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.0e-51 205.3 174 59.2
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.0e-50 203.0 175 58.9
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.6e-50 202.6 171 61.4
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 2.6e-50 202.6 140 72.9
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 7.5e-50 201.1 193 55.4
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.2e-49 199.5 175 58.3
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 2.9e-49 199.1 182 58.2
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.9e-49 199.1 175 57.7
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.9e-49 198.4 175 57.1
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 1.9e-48 196.4 174 55.2
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.9e-48 196.4 161 64.0
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 2.4e-48 196.1 174 56.9
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.4e-48 196.1 171 55.0
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 4.1e-48 195.3 174 56.9
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.0e-46 190.7 168 60.7
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 3.9e-46 188.7 138 69.6
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 6.6e-46 188.0 173 52.6
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 8.6e-46 187.6 173 54.9
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.5e-45 186.8 134 68.7
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 2.5e-45 186.0 131 69.5
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.6e-44 183.3 173 53.8
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 1.6e-44 183.3 165 55.2
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 3.6e-44 182.2 173 52.6
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 3.6e-44 182.2 137 65.0
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 4.7e-44 181.8 173 53.2
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 8.1e-44 181.0 173 53.2
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.3e-43 179.5 172 54.1
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 3.1e-43 179.1 176 52.3
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 1.5e-42 176.8 172 52.3
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 3.4e-42 175.6 120 74.2
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 7.5e-42 174.5 177 52.0
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.3e-41 173.7 173 52.0
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.7e-41 173.3 160 51.2
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.7e-41 173.3 174 53.4
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 3.7e-41 172.2 143 58.7
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.1e-40 170.6 172 51.7
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.1e-40 170.6 172 51.7
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 1.1e-40 170.6 177 51.4
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 3.5e-39 165.6 172 51.7
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 6.0e-39 164.9 168 52.4
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.3e-38 163.7 168 52.4
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.5e-37 159.5 200 47.0
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 2.5e-37 159.5 112 70.5
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 3.3e-37 159.1 130 62.3
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 3.3e-37 159.1 143 55.2
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.2e-36 157.1 125 61.6
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.5e-34 150.2 120 59.2
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 4.4e-34 148.7 162 51.9
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 7.6e-34 147.9 139 59.7
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 8.4e-33 144.4 133 54.9
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 8.4e-33 144.4 177 44.1
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.4e-32 142.9 140 53.6
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.2e-32 142.5 183 44.3
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.6e-31 140.2 119 58.8
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 2.3e-30 136.3 175 41.1
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 3.0e-30 136.0 190 38.4
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 6.6e-30 134.8 175 41.7
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 6.6e-30 134.8 175 41.7
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.1e-29 134.0 175 41.7
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.2e-28 130.6 176 41.5
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.6e-28 130.2 122 54.9
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.1e-28 129.8 172 41.9
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 3.1e-27 125.9 170 40.0
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 3.1e-27 125.9 125 55.2
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 6.9e-27 124.8 138 48.6
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 4.9e-25 118.6 119 51.3
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 2.7e-23 112.8 168 38.7
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 4.6e-23 112.1 173 35.8
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.7e-22 110.2 84 64.3
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.4e-19 100.5 170 37.6
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 6.9e-19 98.2 163 37.4
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 1.9e-16 90.1 128 39.8
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 4.2e-16 89.0 63 68.3
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 5.4e-16 88.6 123 41.5
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 1.2e-15 87.4 94 48.9
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 3.5e-15 85.9 56 73.2
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 7.9e-15 84.7 56 73.2
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.3e-14 84.0 56 73.2
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.9e-13 80.1 52 75.0
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 4.3e-13 79.0 170 31.2
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.3e-11 72.0 52 65.4
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 3.8e-09 65.9 41 75.6
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 4.2e-08 62.4 76 39.5
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 9.3e-08 61.2 66 40.9
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 2.1e-07 60.1 64 43.8
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 6.7e-06 55.1 35 54.3


User provided reference genes

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