Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 3.4e-46 188.0 93 100.0
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 9.5e-33 143.3 94 81.9
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 5.1e-18 94.4 93 60.2
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 9.9e-14 80.1 74 58.1
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 3.8e-13 78.2 79 54.4
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 3.8e-13 78.2 79 54.4
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 6.4e-13 77.4 75 56.0
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.1e-12 76.6 72 51.4
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.4e-12 76.3 77 49.4
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.4e-12 76.3 76 57.9
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 9.3e-12 73.6 79 53.2
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 1.6e-11 72.8 77 50.6
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 2.1e-11 72.4 82 53.7
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.7e-11 72.0 78 52.6
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.7e-11 72.0 73 56.2
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.7e-11 72.0 76 51.3
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 4.6e-11 71.2 68 57.4
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 6.0e-11 70.9 76 48.7
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 7.8e-11 70.5 73 52.1
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.0e-10 70.1 79 51.9
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.0e-10 70.1 79 51.9
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.7e-10 69.3 78 50.0
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 1.7e-10 69.3 78 50.0
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 1.7e-10 69.3 76 50.0
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.7e-10 69.3 75 53.3
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.3e-10 68.9 77 50.6
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 2.3e-10 68.9 78 50.0
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.0e-10 68.6 74 55.4
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 5.1e-10 67.8 71 52.1
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 6.6e-10 67.4 77 48.1
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 8.7e-10 67.0 73 49.3
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 1.1e-09 66.6 77 49.4
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.1e-09 66.6 77 51.9
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 1.1e-09 66.6 71 52.1
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 1.1e-09 66.6 75 48.0
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 1.5e-09 66.2 77 51.9
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.9e-09 65.9 76 50.0
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.5e-09 65.5 76 53.9
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 5.6e-09 64.3 79 53.2
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 9.6e-09 63.5 79 49.4
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 9.6e-09 63.5 77 48.1
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 9.6e-09 63.5 69 53.6
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 1.3e-08 63.2 79 49.4
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 1.3e-08 63.2 67 52.2
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 2.1e-08 62.4 84 47.6
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.1e-08 62.4 76 48.7
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 2.1e-08 62.4 75 48.0
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 2.8e-08 62.0 75 48.0
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 3.6e-08 61.6 72 48.6
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 3.6e-08 61.6 70 54.3
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 4.8e-08 61.2 75 52.0
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 6.2e-08 60.8 82 43.9
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 6.2e-08 60.8 83 48.2
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 6.2e-08 60.8 72 44.4
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 6.2e-08 60.8 72 44.4
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 6.2e-08 60.8 70 51.4
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 8.1e-08 60.5 70 50.0
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 1.1e-07 60.1 81 45.7
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 1.8e-07 59.3 76 46.1
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 1.8e-07 59.3 72 44.4
Zm00001eb412740 Zea mays HOM05D022287 ORTHO05D004009 1.8e-07 59.3 44 65.9
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.4e-07 58.9 79 46.8
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 2.4e-07 58.9 72 43.1
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 3.1e-07 58.5 73 47.9
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 3.1e-07 58.5 70 44.3
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 3.1e-07 58.5 72 43.1
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 3.1e-07 58.5 73 46.6
Zm00001eb067240 Zea mays HOM05D022287 ORTHO05D004009 3.1e-07 58.5 44 68.2
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 4.0e-07 58.2 65 49.2
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 5.3e-07 57.8 75 45.3
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 5.3e-07 57.8 67 47.8
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 5.3e-07 57.8 70 51.4
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 5.3e-07 57.8 79 44.3
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 6.9e-07 57.4 76 44.7
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 6.9e-07 57.4 74 43.2
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 6.9e-07 57.4 68 51.5
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 9.0e-07 57.0 79 46.8
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 9.0e-07 57.0 71 49.3
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 1.2e-06 56.6 65 47.7
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 1.2e-06 56.6 65 47.7
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.2e-06 56.6 75 42.7
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 1.2e-06 56.6 70 44.3
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 1.2e-06 56.6 70 44.3
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 1.2e-06 56.6 70 48.6
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 1.2e-06 56.6 73 42.5
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 2.0e-06 55.8 79 44.3
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.0e-06 55.8 77 44.2
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.6e-06 55.5 72 44.4
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 3.4e-06 55.1 75 44.0
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 3.4e-06 55.1 77 45.5
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.4e-06 55.1 79 46.8
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 4.4e-06 54.7 81 43.2
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 5.8e-06 54.3 79 44.3
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.8e-06 54.3 77 45.5
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.8e-06 54.3 76 47.4
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 5.8e-06 54.3 64 51.6
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 5.8e-06 54.3 72 41.7
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 7.6e-06 53.9 73 46.6
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 7.6e-06 53.9 70 44.3
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 7.6e-06 53.9 83 42.2
Aqoxy1G02111 Aquilegia oxysepala HOM05D007037 ORTHO05D006691 9.9e-06 53.5 67 46.3
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 9.9e-06 53.5 77 46.8
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 9.9e-06 53.5 80 42.5
vmacro16586 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 9.9e-06 53.5 55 49.1


User provided reference genes

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