Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 0.0e+00 1328.2 672 100.0
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.2e-307 1059.3 673 79.3
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 6.5e-232 807.7 650 61.1
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 1.1e-228 797.0 665 60.0
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 6.3e-227 791.2 655 60.5
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 4.5e-225 785.0 665 60.0
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 2.2e-224 782.7 649 60.6
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 5.0e-224 781.6 649 60.4
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.9e-223 779.6 649 60.1
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 5.5e-223 778.1 651 61.1
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 2.7e-222 775.8 663 59.3
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 6.1e-222 774.6 667 59.1
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 2.3e-221 772.7 648 59.4
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 3.9e-221 771.9 668 59.3
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 6.7e-221 771.2 651 60.1
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 8.8e-221 770.8 666 58.3
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 2.6e-220 769.2 666 59.0
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 7.4e-220 767.7 655 58.3
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 1.7e-219 766.5 669 58.7
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 1.7e-219 766.5 649 60.1
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 2.8e-219 765.8 667 59.2
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 3.7e-219 765.4 691 56.4
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 3.7e-219 765.4 662 59.1
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 6.3e-219 764.6 645 58.6
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 6.3e-219 764.6 667 58.6
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 1.1e-218 763.8 651 59.3
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 1.8e-218 763.1 650 59.4
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 1.8e-218 763.1 644 60.6
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 1.8e-218 763.1 668 57.3
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 5.3e-218 761.5 652 58.3
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 5.3e-218 761.5 650 58.8
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 7.0e-218 761.1 670 57.5
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 3.5e-217 758.8 650 58.9
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 4.5e-217 758.4 646 59.4
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 1.0e-216 757.3 673 57.8
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 1.0e-216 757.3 665 56.7
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 2.2e-216 756.1 686 56.0
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 3.8e-216 755.4 675 57.2
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 5.0e-216 755.0 650 58.5
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 1.1e-215 753.8 649 58.2
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 1.1e-215 753.8 644 59.2
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 4.2e-215 751.9 667 57.9
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 2.1e-214 749.6 691 55.3
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 2.1e-214 749.6 654 58.1
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 8.0e-214 747.7 650 58.9
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 4.0e-213 745.3 651 56.5
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 3.7e-211 738.8 664 56.5
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 6.3e-211 738.0 665 55.3
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 6.3e-211 738.0 689 54.7
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 8.2e-211 737.6 674 56.5
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 8.2e-211 737.6 679 56.1
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 1.1e-210 737.3 670 56.4
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 3.1e-210 735.7 651 56.2
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 9.1e-210 734.2 694 53.9
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 2.0e-209 733.0 651 56.8
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 2.2e-208 729.6 655 56.8
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 2.9e-208 729.2 662 56.3
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 9.4e-207 724.2 651 56.5
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 1.2e-206 723.8 651 56.5
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 1.6e-206 723.4 658 56.7
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 2.7e-206 722.6 650 57.8
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 2.8e-203 712.6 642 56.2
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 3.7e-203 712.2 735 51.2
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 6.3e-203 711.4 672 54.5
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 1.1e-202 710.7 683 52.9
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 4.5e-201 705.3 667 53.4
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 1.0e-200 704.1 678 52.9
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 1.3e-200 703.7 678 52.5
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.9e-200 702.6 593 62.1
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 3.8e-200 702.2 670 54.0
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 1.1e-199 700.7 632 57.1
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 1.5e-199 700.3 580 60.7
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 4.2e-199 698.7 678 52.7
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 1.0e-197 694.1 724 50.1
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 6.8e-197 691.4 672 52.2
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 1.2e-196 690.6 673 52.0
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 1.2e-196 690.6 623 56.3
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 4.4e-196 688.7 734 49.3
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.3e-195 687.2 650 55.2
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 4.9e-195 685.3 675 51.7
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 3.1e-194 682.6 696 51.7
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 4.1e-194 682.2 700 51.1
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 7.0e-194 681.4 635 53.2
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 1.6e-193 680.2 648 53.5
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 5.0e-192 675.2 572 59.4
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.3e-191 672.5 575 59.3
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 4.4e-188 662.1 742 47.4
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 4.9e-187 658.7 639 54.5
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 8.3e-187 657.9 662 52.6
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 1.1e-183 647.5 556 58.5
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 2.9e-179 632.9 689 49.6
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 4.9e-179 632.1 562 57.1
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.1e-178 630.9 631 52.8
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 1.9e-175 620.2 659 50.8
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 1.8e-173 613.6 657 51.0
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.3e-171 607.4 648 49.7
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 3.1e-165 586.3 514 58.6
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 2.2e-163 580.1 665 47.7
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 3.5e-161 572.8 647 47.4
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 6.6e-160 568.5 635 49.3
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 1.6e-150 537.3 493 55.4
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 7.9e-137 491.9 691 43.1
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 5.0e-123 446.0 574 45.3
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.0e-112 411.8 351 59.5
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 6.5e-99 365.9 308 60.4
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 6.7e-96 355.9 341 57.5
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 6.5e-83 312.8 307 49.5
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.6e-79 300.8 240 66.2
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 2.3e-75 287.7 355 46.8
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 5.0e-75 286.6 662 32.6
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 4.9e-70 270.0 366 42.3
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 9.2e-69 265.8 319 48.6
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 4.9e-46 190.3 323 35.9
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 1.4e-45 188.7 753 27.0
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 3.5e-44 184.1 133 69.2
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 4.3e-42 177.2 113 76.1
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 1.4e-40 172.2 175 48.0
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 1.0e-27 129.4 167 41.9
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 6.9e-24 116.7 115 55.7
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.8e-19 102.1 96 52.1
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 1.1e-18 99.4 105 49.5
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.7e-14 85.5 65 58.5
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.2e-12 79.3 69 53.6
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.3e-11 75.9 49 71.4
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.8e-11 75.5 49 71.4
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 2.3e-11 75.1 52 67.3
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.5e-10 71.6 49 69.4
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 4.8e-09 67.4 133 34.6
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 6.3e-09 67.0 77 42.9
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 4.1e-08 64.3 58 48.3
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 4.1e-08 64.3 58 48.3
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.2e-07 62.8 42 66.7
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.2e-07 62.8 42 64.3
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 3.4e-07 61.2 42 69.0


User provided reference genes

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