Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0733400 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 1.1e-64 250.4 191 100.0
Zm00001eb190230 Zea mays HOM05D006794 ORTHO05D008322 6.3e-31 138.3 195 50.8
Os06g0256800 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 1.2e-16 90.9 202 49.0
Sed0017400 Sechium edule HOM05D000034 ORTHO05D000037 5.3e-14 82.0 190 49.5
CiPaw.16G095900 Carya illinoinensis HOM05D006794 ORTHO05D008322 1.6e-13 80.5 192 35.9
ClCG04G010570 Citrullus lanatus HOM05D006794 ORTHO05D008322 4.5e-13 79.0 190 47.4
HPP92_008000 Vanilla planifolia HOM05D006794 ORTHO05D008322 1.0e-12 77.8 199 45.2
FAN13G2800 Fragaria x ananassa HOM05D006794 ORTHO05D008322 2.2e-12 76.6 190 43.7
Thecc.03G058000 Theobroma cacao HOM05D006794 ORTHO05D008322 2.2e-12 76.6 194 35.1
Cfa021396 Carpinus fangiana HOM05D006794 ORTHO05D008322 3.8e-12 75.9 196 43.9
Gorai.008G290400 Gossypium raimondii HOM05D006794 ORTHO05D008322 3.8e-12 75.9 193 34.2
GSVIVG01008463001 Vitis vinifera HOM05D006794 ORTHO05D008322 3.8e-12 75.9 192 34.4
TWI81G0550 Tripterygium wilfordii HOM05D006794 ORTHO05D008322 6.5e-12 75.1 196 48.0
QL10p030576 Quercus lobata HOM05D006794 ORTHO05D008322 8.5e-12 74.7 193 34.7
CiPaw.15G144200 Carya illinoinensis HOM05D006794 ORTHO05D008322 1.1e-11 74.3 204 33.3
Hma1.2p1_0163F.1_g073020 Hydrangea macrophylla HOM05D006794 ORTHO05D008322 2.5e-11 73.2 187 44.9
Duzib068G0617 Durio zibethinus HOM05D006794 ORTHO05D008322 3.2e-11 72.8 194 34.0
Sed0024550 Sechium edule HOM05D006794 ORTHO05D008322 3.2e-11 72.8 190 53.2
FAN04G0930 Fragaria x ananassa HOM05D006794 ORTHO05D008322 4.2e-11 72.4 185 53.5
FAN08G0189 Fragaria x ananassa HOM05D006794 ORTHO05D008322 4.2e-11 72.4 184 53.3
FvH4_5g17460 Fragaria vesca HOM05D006794 ORTHO05D008322 9.4e-11 71.2 189 51.3
FAN18G3906 Fragaria x ananassa HOM05D006794 ORTHO05D008322 9.4e-11 71.2 189 51.3
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 9.4e-11 71.2 192 41.7
MD06G1228000 Malus domestica HOM05D006794 ORTHO05D008322 9.4e-11 71.2 191 52.9
Prupe.5G234500 Prunus persica HOM05D006794 ORTHO05D008322 1.2e-10 70.9 193 54.4
Dinv08202 Davidia involucrata HOM05D006794 ORTHO05D008322 2.1e-10 70.1 191 47.1
arahy.Tifrunner.gnm1.ann1.KQ26AL Arachis hypogaea HOM05D006794 ORTHO05D008322 2.7e-10 69.7 189 34.9
arahy.Tifrunner.gnm1.ann1.P2R0G6 Arachis hypogaea HOM05D006794 ORTHO05D008322 2.7e-10 69.7 189 34.9
Lalb_Chr16g0386961 Lupinus albus HOM05D006794 ORTHO05D008322 2.7e-10 69.7 200 33.5
TAR622G0128 Trochodendron aralioides HOM05D006794 ORTHO05D008322 2.7e-10 69.7 189 51.3
VMungo0251G1205 Vigna mungo HOM05D006794 ORTHO05D008322 3.6e-10 69.3 190 48.4
Eucgr.B00988 Eucalyptus grandis HOM05D006794 ORTHO05D008322 4.7e-10 68.9 193 54.9
Manes.06G005000 Manihot esculenta HOM05D006794 ORTHO05D008322 4.7e-10 68.9 196 46.9
Nn4g24277 Nelumbo nucifera HOM05D006794 ORTHO05D008322 4.7e-10 68.9 205 52.2
Glyma.09G174700 Glycine max HOM05D006794 ORTHO05D008322 8.0e-10 68.2 191 48.7
Phvul.002G330800 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 8.0e-10 68.2 190 44.2
RcHm_v2.0_Chr7g0178231 Rosa chinensis HOM05D006794 ORTHO05D008322 8.0e-10 68.2 190 50.5
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 1.0e-09 67.8 190 31.6
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 1.0e-09 67.8 196 35.2
arahy.Tifrunner.gnm1.ann1.AT27RE Arachis hypogaea HOM05D006794 ORTHO05D008322 1.8e-09 67.0 194 51.0
Glyma.08G055100 Glycine max HOM05D006794 ORTHO05D008322 1.8e-09 67.0 190 47.4
PGR083G0475 Punica granatum HOM05D006794 ORTHO05D008322 1.8e-09 67.0 189 43.9
MD14G1237200 Malus domestica HOM05D006794 ORTHO05D008322 4.0e-09 65.9 191 48.7
Lj4g0014763 Lotus japonicus HOM05D006794 ORTHO05D008322 6.8e-09 65.1 182 33.5
VMungo0464G2014 Vigna mungo HOM05D006794 ORTHO05D008322 6.8e-09 65.1 191 47.6
arahy.Tifrunner.gnm1.ann1.PNUX28 Arachis hypogaea HOM05D006794 ORTHO05D008322 8.8e-09 64.7 194 50.5
CANSAT80G2635 Cannabis sativa HOM05D006794 ORTHO05D008322 8.8e-09 64.7 203 43.3
Cpa.g.sc3.383 Carica papaya HOM05D006794 ORTHO05D008322 8.8e-09 64.7 190 41.1
Phvul.004G150000 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 8.8e-09 64.7 191 47.6
CANSAT80G0659 Cannabis sativa HOM05D006794 ORTHO05D008322 1.2e-08 64.3 204 44.6
Oeu046160.1 Olea europaea HOM05D006794 ORTHO05D008322 1.2e-08 64.3 204 31.9
CSS0048798 Camellia sinensis var. sinensis HOM05D006794 ORTHO05D008322 2.0e-08 63.5 190 53.2
MBI19_g22477_MAGBIO Magnolia biondii HOM05D006794 ORTHO05D008322 2.0e-08 63.5 193 35.8
Duzib084G0148 Durio zibethinus HOM05D006794 ORTHO05D008322 2.6e-08 63.2 205 31.7
Lj2g0023485 Lotus japonicus HOM05D006794 ORTHO05D008322 2.6e-08 63.2 192 52.1
Atru.chr9.1672 Acer truncatum HOM05D006794 ORTHO05D008322 5.7e-08 62.0 195 38.5
Potri.012G045700 Populus trichocarpa HOM05D006794 ORTHO05D008322 7.5e-08 61.6 188 53.2
TPR.G8635 Trifolium pratense HOM05D006794 ORTHO05D008322 9.8e-08 61.2 192 42.2
Lalb_Chr22g0353521 Lupinus albus HOM05D006794 ORTHO05D008322 1.3e-07 60.8 195 45.1
CDE05G2986 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 1.7e-07 60.5 177 33.3
HanXRQChr01g0012541 Helianthus annuus HOM05D006794 ORTHO05D008322 2.2e-07 60.1 193 43.0
Medtr6g069830 Medicago truncatula HOM05D006794 ORTHO05D008322 2.2e-07 60.1 192 42.2
Potri.015G036900 Populus trichocarpa HOM05D006794 ORTHO05D008322 2.2e-07 60.1 189 45.5
Sp3g16080 Schrenkiella parvula HOM05D006794 ORTHO05D008322 2.2e-07 60.1 205 32.2
PSO210G4985 Papaver somniferum HOM05D006794 ORTHO05D008322 6.3e-07 58.5 211 28.0
Sabra15G0031400 Salix brachista HOM05D006794 ORTHO05D008322 1.1e-06 57.8 189 34.9
PSO832G1236 Papaver somniferum HOM05D006794 ORTHO05D008322 1.8e-06 57.0 211 27.5
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 7.0e-06 55.1 170 47.1
Haze_18880 Corylus avellana HOM05D006794 ORTHO05D008322 9.1e-06 54.7 106 39.6


User provided reference genes

Program Settings