Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 3.1e-81 305.1 151 100.0
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 9.6e-67 256.9 149 81.9
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 7.4e-59 230.7 146 73.3
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.1e-57 226.9 146 71.9
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 5.3e-57 224.6 145 71.0
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 5.3e-57 224.6 145 71.0
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 1.2e-56 223.4 146 69.2
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.0e-56 222.6 145 71.7
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 2.6e-56 222.2 145 71.0
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 4.5e-56 221.5 146 70.5
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 7.6e-56 220.7 145 69.7
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 1.7e-55 219.5 146 70.5
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 1.7e-55 219.5 144 71.5
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.2e-55 219.2 146 69.2
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.2e-55 219.2 145 69.7
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.2e-55 219.2 145 69.7
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.2e-55 219.2 145 69.7
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.2e-55 219.2 146 71.2
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 2.9e-55 218.8 144 71.5
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.9e-55 218.8 144 71.5
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.9e-55 218.8 144 71.5
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.9e-55 218.8 144 71.5
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.9e-55 218.8 144 71.5
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.9e-55 218.8 144 71.5
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.9e-55 218.8 146 69.2
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 3.8e-55 218.4 139 72.7
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 3.8e-55 218.4 145 68.3
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 4.9e-55 218.0 146 69.9
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 4.9e-55 218.0 145 70.3
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 6.4e-55 217.6 146 69.2
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 8.4e-55 217.2 146 70.5
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 8.4e-55 217.2 144 70.1
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 8.4e-55 217.2 145 70.3
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 8.4e-55 217.2 145 68.3
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 8.4e-55 217.2 145 69.7
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 1.1e-54 216.9 144 72.9
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.1e-54 216.9 145 67.6
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.4e-54 216.5 143 70.6
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.9e-54 216.1 146 68.5
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.9e-54 216.1 144 69.4
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.9e-54 216.1 146 68.5
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 1.9e-54 216.1 147 68.7
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 2.4e-54 215.7 146 68.5
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 2.4e-54 215.7 144 72.2
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 2.4e-54 215.7 144 70.1
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.2e-54 214.9 146 67.8
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 5.5e-54 214.5 145 67.6
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 9.3e-54 213.8 144 69.4
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 9.3e-54 213.8 145 68.3
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 1.2e-53 213.4 146 69.2
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 1.2e-53 213.4 144 70.1
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 1.6e-53 213.0 147 70.7
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.6e-53 213.0 144 70.8
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 2.1e-53 212.6 146 67.8
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 6.0e-53 211.1 144 70.1
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 6.0e-53 211.1 146 65.8
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 7.9e-53 210.7 144 69.4
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 7.9e-53 210.7 146 69.2
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 7.9e-53 210.7 146 68.5
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.0e-52 210.3 146 67.1
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 1.0e-52 210.3 144 68.1
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.3e-52 209.9 145 66.2
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 1.3e-52 209.9 144 66.0
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 1.3e-52 209.9 144 68.8
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 1.3e-52 209.9 144 66.0
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 1.3e-52 209.9 144 68.1
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.3e-52 209.9 144 68.1
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 3.0e-52 208.8 144 67.4
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 3.0e-52 208.8 144 66.0
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 3.0e-52 208.8 144 66.7
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 3.9e-52 208.4 144 67.4
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 3.9e-52 208.4 144 67.4
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 3.9e-52 208.4 144 71.5
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 3.9e-52 208.4 144 68.1
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 5.1e-52 208.0 144 68.8
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 5.1e-52 208.0 144 66.0
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 5.1e-52 208.0 144 68.8
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 6.7e-52 207.6 146 67.1
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 6.7e-52 207.6 144 65.3
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 6.7e-52 207.6 145 67.6
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 6.7e-52 207.6 144 70.8
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 8.7e-52 207.2 146 67.1
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 8.7e-52 207.2 146 67.1
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 8.7e-52 207.2 146 67.1
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 8.7e-52 207.2 146 67.1
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 8.7e-52 207.2 144 64.6
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.1e-51 206.8 144 67.4
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 1.1e-51 206.8 145 64.1
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 1.1e-51 206.8 148 67.6
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 1.1e-51 206.8 148 67.6
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 1.1e-51 206.8 144 67.4
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.1e-51 206.8 144 66.0
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 1.5e-51 206.5 144 67.4
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.5e-51 206.5 144 67.4
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 1.9e-51 206.1 144 68.8
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 4.3e-51 204.9 146 68.5
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 4.3e-51 204.9 145 66.2
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 4.3e-51 204.9 144 68.1
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 5.6e-51 204.5 146 65.8
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 7.4e-51 204.1 146 65.8
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 7.4e-51 204.1 146 65.8
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 7.4e-51 204.1 146 65.8
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 7.4e-51 204.1 145 69.0
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 9.6e-51 203.8 146 67.8
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 1.3e-50 203.4 146 65.1
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 3.7e-50 201.8 144 66.7
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 3.7e-50 201.8 146 65.8
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 4.8e-50 201.4 147 66.7
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 6.2e-50 201.1 144 65.3
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.1e-49 200.3 145 66.9
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 1.1e-49 200.3 145 66.9
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 1.2e-48 196.8 144 66.0
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 1.5e-48 196.4 137 69.3
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.7e-45 185.7 133 68.4
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 4.6e-45 184.9 197 50.3
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 1.0e-44 183.7 198 49.5
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 1.5e-43 179.9 125 68.0
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 5.7e-43 177.9 115 73.9
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.6e-42 176.4 144 60.4
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 1.8e-41 172.9 178 52.2
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 2.4e-41 172.6 145 60.0
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 5.3e-41 171.4 234 40.6
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.3e-39 166.8 112 69.6
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.7e-39 166.4 139 61.2
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 4.2e-38 161.8 138 55.1
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 1.2e-37 160.2 102 74.5
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 8.7e-36 154.1 288 34.0
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 9.7e-35 150.6 114 64.0
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.9e-30 136.3 137 51.1
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 5.5e-30 134.8 109 63.3
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 6.1e-29 131.3 96 63.5
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.0e-28 130.6 90 65.6
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 4.8e-26 121.7 142 44.4
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.1e-25 120.6 132 47.0
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 3.4e-24 115.5 142 43.0
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 5.9e-24 114.8 143 45.5
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 1.3e-23 113.6 77 67.5
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.3e-23 113.6 143 42.0
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.3e-23 113.6 139 43.2
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 4.2e-22 108.6 136 43.4
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.6e-21 106.7 132 45.5
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 2.1e-21 106.3 85 60.0
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 6.1e-21 104.8 144 45.8
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 4.4e-19 98.6 65 70.8
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.4e-19 98.6 80 61.2
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.4e-19 98.6 80 61.2
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.7e-19 98.2 65 70.8
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 8.2e-18 94.4 64 70.3
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.2e-16 90.5 64 67.2
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 1.2e-13 80.5 101 46.5
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 2.6e-11 72.8 68 55.9
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 4.2e-06 55.5 72 41.7


User provided reference genes

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