Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0712400 Oryza sativa ssp. japonica HOM05D000078 ORTHO05D293260 1.9e-127 459.5 295 100.0
Os04g0648900 Oryza sativa ssp. japonica HOM05D000078 ORTHO05D000025 4.1e-29 132.9 119 74.8
Zm00001eb432090 Zea mays HOM05D000078 ORTHO05D000025 1.4e-13 81.3 100 61.0
CSS0028041 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 6.1e-09 65.9 90 52.2
MD15G1286600 Malus domestica HOM05D000078 ORTHO05D000025 1.0e-08 65.1 89 48.3
Potri.007G046500 Populus trichocarpa HOM05D000078 ORTHO05D000025 1.0e-08 65.1 89 48.3
Gohir.A12G073100 Gossypium hirsutum HOM05D000078 ORTHO05D000025 1.4e-08 64.7 86 51.2
Duzib147G0692 Durio zibethinus HOM05D000078 ORTHO05D000025 1.8e-08 64.3 86 52.3
FvH4_1g16370 Fragaria vesca HOM05D000078 ORTHO05D000025 1.8e-08 64.3 89 50.6
FAN19G1117 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.8e-08 64.3 89 50.6
FAN28G2125 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.8e-08 64.3 89 50.6
RcHm_v2.0_Chr2g0106241 Rosa chinensis HOM05D000078 ORTHO05D000025 1.8e-08 64.3 89 50.6
Sabra07G0041500 Salix brachista HOM05D000078 ORTHO05D000025 1.8e-08 64.3 89 48.3
Duzib264G0033 Durio zibethinus HOM05D000078 ORTHO05D000025 2.3e-08 63.9 88 51.1
Gohir.D12G070900 Gossypium hirsutum HOM05D000078 ORTHO05D000025 3.0e-08 63.5 86 50.0
Gorai.008G077900 Gossypium raimondii HOM05D000078 ORTHO05D000025 3.0e-08 63.5 86 50.0
A04p17820 Brassica napus HOM05D000078 ORTHO05D000025 4.0e-08 63.2 93 47.3
BraA04t17401Z Brassica rapa HOM05D000078 ORTHO05D000025 4.0e-08 63.2 93 47.3
FAN23G0702 Fragaria x ananassa HOM05D000078 ORTHO05D000025 4.0e-08 63.2 90 51.1
Manes.13G120400 Manihot esculenta HOM05D000078 ORTHO05D000025 4.0e-08 63.2 89 49.4
Cc07_g06220 Coffea canephora HOM05D000078 ORTHO05D000025 5.2e-08 62.8 95 43.2
Prupe.6G231500 Prunus persica HOM05D000078 ORTHO05D000025 5.2e-08 62.8 89 49.4
Thecc.01G060800 Theobroma cacao HOM05D000078 ORTHO05D000025 5.2e-08 62.8 127 42.5
BcaC02g08551 Brassica carinata HOM05D000078 ORTHO05D000025 6.8e-08 62.4 93 47.3
BcaNung02044 Brassica carinata HOM05D000078 ORTHO05D000025 6.8e-08 62.4 86 50.0
BcaNung02961 Brassica carinata HOM05D000078 ORTHO05D000025 6.8e-08 62.4 86 50.0
A03p64990 Brassica napus HOM05D000078 ORTHO05D000025 6.8e-08 62.4 86 50.0
C04p52680 Brassica napus HOM05D000078 ORTHO05D000025 6.8e-08 62.4 93 47.3
C07p62290 Brassica napus HOM05D000078 ORTHO05D000025 6.8e-08 62.4 86 50.0
BolC4t26833H Brassica oleracea HOM05D000078 ORTHO05D000025 6.8e-08 62.4 93 47.3
BolC7t46645H Brassica oleracea HOM05D000078 ORTHO05D000025 6.8e-08 62.4 86 50.0
BraA03t15558Z Brassica rapa HOM05D000078 ORTHO05D000025 6.8e-08 62.4 86 50.0
FAN26G1443 Fragaria x ananassa HOM05D000078 ORTHO05D000025 8.8e-08 62.0 89 49.4
AT2G23340 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 1.2e-07 61.6 91 48.4
BcaNung02526 Brassica carinata HOM05D000078 ORTHO05D000025 1.2e-07 61.6 86 50.0
ClCG01G016940 Citrullus lanatus HOM05D000078 ORTHO05D000025 1.2e-07 61.6 89 48.3
CsaV3_6G043400 Cucumis sativus L. HOM05D000078 ORTHO05D000025 1.2e-07 61.6 89 49.4
Duzib187G0078 Durio zibethinus HOM05D000078 ORTHO05D000025 1.2e-07 61.6 86 50.0
Gohir.A02G156100 Gossypium hirsutum HOM05D000078 ORTHO05D000025 1.2e-07 61.6 86 51.2
Gohir.D03G024500 Gossypium hirsutum HOM05D000078 ORTHO05D000025 1.2e-07 61.6 86 51.2
Sabra05G0110400 Salix brachista HOM05D000078 ORTHO05D000025 1.2e-07 61.6 89 47.2
Zm00001eb271520 Zea mays HOM05D000078 ORTHO05D000025 1.2e-07 61.6 70 51.4
QL06p040548 Quercus lobata HOM05D000078 ORTHO05D000025 1.5e-07 61.2 89 48.3
Dinv30015 Davidia involucrata HOM05D000078 ORTHO05D000025 2.0e-07 60.8 91 48.4
Ah.02g126010 Amaranthus hybridus HOM05D000078 ORTHO05D000025 2.6e-07 60.5 94 46.8
BcaNung02527 Brassica carinata HOM05D000078 ORTHO05D000025 2.6e-07 60.5 86 48.8
A01p01750 Brassica napus HOM05D000078 ORTHO05D000025 2.6e-07 60.5 86 48.8
C01p01920 Brassica napus HOM05D000078 ORTHO05D000025 2.6e-07 60.5 86 48.8
BraA01t00167Z Brassica rapa HOM05D000078 ORTHO05D000025 2.6e-07 60.5 86 48.8
Gorai.003G026100 Gossypium raimondii HOM05D000078 ORTHO05D000025 2.6e-07 60.5 86 50.0
Rhsim08G0098900 Rhododendron simsii HOM05D000078 ORTHO05D000025 2.6e-07 60.5 92 47.8
TWI09G0950 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 2.6e-07 60.5 89 48.3
Aa31LG6G14080 Aethionema arabicum HOM05D000078 ORTHO05D000025 3.4e-07 60.1 87 46.0
AL4G13230 Arabidopsis lyrata HOM05D000078 ORTHO05D000025 3.4e-07 60.1 91 45.1
Carub.0007s0308 Capsella rubella HOM05D000078 ORTHO05D000025 3.4e-07 60.1 86 48.8
Cfa014704 Carpinus fangiana HOM05D000078 ORTHO05D000025 3.4e-07 60.1 89 47.2
Migut.N02735 Erythranthe guttata HOM05D000078 ORTHO05D000025 3.4e-07 60.1 93 45.2
PGR004G2688 Punica granatum HOM05D000078 ORTHO05D000025 3.4e-07 60.1 85 50.6
Actinidia22649 Actinidia chinensis HOM05D000078 ORTHO05D000025 4.4e-07 59.7 127 37.0
Actinidia36471 Actinidia chinensis HOM05D000078 ORTHO05D000025 4.4e-07 59.7 95 44.2
MELO3C007573.2 Cucumis melo HOM05D000078 ORTHO05D000025 4.4e-07 59.7 89 48.3
Nn1g04775 Nelumbo nucifera HOM05D000078 ORTHO05D000025 4.4e-07 59.7 88 46.6
Rhsim10G0113900 Rhododendron simsii HOM05D000078 ORTHO05D000025 4.4e-07 59.7 137 35.0
Aqoxy5G01181 Aquilegia oxysepala HOM05D000078 ORTHO05D000025 5.7e-07 59.3 90 45.6
MSTRG.24350 Avicennia marina HOM05D000078 ORTHO05D000025 5.7e-07 59.3 93 46.2
BcaB06g27891 Brassica carinata HOM05D000078 ORTHO05D000025 5.7e-07 59.3 91 47.3
Phvul.001G023700 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 5.7e-07 59.3 96 45.8
Phvul.009G066980 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 5.7e-07 59.3 95 42.1
Sc16g0004540 Simmondsia chinensis HOM05D000078 ORTHO05D000025 5.7e-07 59.3 87 49.4
TWI73G0851 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 5.7e-07 59.3 89 48.3
Actinidia01091 Actinidia chinensis HOM05D000078 ORTHO05D000025 7.5e-07 58.9 93 47.3
Ah.03g145670 Amaranthus hybridus HOM05D000078 ORTHO05D000025 7.5e-07 58.9 87 49.4
CiPaw.04G131200 Carya illinoinensis HOM05D000078 ORTHO05D000025 7.5e-07 58.9 89 48.3
AUR62003913 Chenopodium quinoa HOM05D000078 ORTHO05D000025 7.5e-07 58.9 87 49.4
Haze_13329 Corylus avellana HOM05D000078 ORTHO05D000025 7.5e-07 58.9 89 47.2
Dinv26847 Davidia involucrata HOM05D000078 ORTHO05D000025 7.5e-07 58.9 89 49.4
Duzib116G0415 Durio zibethinus HOM05D000078 ORTHO05D000025 7.5e-07 58.9 89 46.1
Glyma.14G084700 Glycine max HOM05D000078 ORTHO05D000025 7.5e-07 58.9 89 43.8
Sp4g02330 Schrenkiella parvula HOM05D000078 ORTHO05D000025 7.5e-07 58.9 91 47.3
Sed0002958 Sechium edule HOM05D000078 ORTHO05D000025 7.5e-07 58.9 89 46.1
TAR381G1482 Trochodendron aralioides HOM05D000078 ORTHO05D000025 7.5e-07 58.9 89 44.9
unitig_32.g10768 Utricularia gibba HOM05D000078 ORTHO05D000025 7.5e-07 58.9 113 38.9
CARHR292970 Cardamine hirsuta HOM05D000078 ORTHO05D000025 9.8e-07 58.5 85 49.4
Lj4C62T9 Lonicera japonica HOM05D000078 ORTHO05D000025 9.8e-07 58.5 89 44.9
MD15G1078900 Malus domestica HOM05D000078 ORTHO05D000025 9.8e-07 58.5 94 44.7
Nitab4.5_0000290g0040 Nicotiana tabacum HOM05D000078 ORTHO05D000025 9.8e-07 58.5 97 44.3
Rhsim06G0053100 Rhododendron simsii HOM05D000078 ORTHO05D000025 9.8e-07 58.5 89 46.1
SGA_v2.0_scaffold15G07342 Striga asiatica HOM05D000078 ORTHO05D000025 9.8e-07 58.5 65 50.8
COL.COLO4_26556 Corchorus olitorius HOM05D000078 ORTHO05D000025 1.3e-06 58.2 89 46.1
Migut.H00411 Erythranthe guttata HOM05D000078 ORTHO05D000025 1.3e-06 58.2 69 50.7
Glyma.17G240100 Glycine max HOM05D000078 ORTHO05D000025 1.3e-06 58.2 89 43.8
Lj4P154T9 Lonicera japonica HOM05D000078 ORTHO05D000025 1.3e-06 58.2 86 52.3
MD08G1096000 Malus domestica HOM05D000078 ORTHO05D000025 1.3e-06 58.2 94 45.7
QL02p004228 Quercus lobata HOM05D000078 ORTHO05D000025 1.3e-06 58.2 89 44.9
SalBow5G5367 Salvia bowleyana HOM05D000078 ORTHO05D000025 1.3e-06 58.2 69 50.7
EL10Ac6g15715 Beta vulgaris HOM05D000078 ORTHO05D000025 1.7e-06 57.8 87 48.3
Ciclev10002733m.g Citrus clementina HOM05D000078 ORTHO05D000025 1.7e-06 57.8 92 45.7
Duzib093G0354 Durio zibethinus HOM05D000078 ORTHO05D000025 1.7e-06 57.8 89 46.1
Nitab4.5_0000333g0020 Nicotiana tabacum HOM05D000078 ORTHO05D000025 1.7e-06 57.8 93 45.2
Potri.014G025200 Populus trichocarpa HOM05D000078 ORTHO05D000025 1.7e-06 57.8 93 44.1
Solyc02g093130.3 Solanum lycopersicum HOM05D000078 ORTHO05D000025 1.7e-06 57.8 97 45.4
Sopen02g037700 Solanum pennellii HOM05D000078 ORTHO05D000025 1.7e-06 57.8 97 45.4
PGSC0003DMG400004005 Solanum tuberosum HOM05D000078 ORTHO05D000025 1.7e-06 57.8 97 45.4
THA.LOC104801423 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 1.7e-06 57.8 61 57.4
Thecc.08G003000 Theobroma cacao HOM05D000078 ORTHO05D000025 1.7e-06 57.8 113 38.9
HPP92_017370 Vanilla planifolia HOM05D000078 ORTHO05D000025 1.7e-06 57.8 92 45.7
VMungo0647G0717 Vigna mungo HOM05D000078 ORTHO05D000025 1.7e-06 57.8 96 45.8
Zm00001eb375580 Zea mays HOM05D000078 ORTHO05D000025 1.7e-06 57.8 65 50.8
MSTRG.1065 Avicennia marina HOM05D000078 ORTHO05D000025 2.2e-06 57.4 87 49.4
MSTRG.25074 Avicennia marina HOM05D000078 ORTHO05D000025 2.2e-06 57.4 88 47.7
Carub.0004s0254 Capsella rubella HOM05D000078 ORTHO05D000025 2.2e-06 57.4 91 44.0
Migut.L00172 Erythranthe guttata HOM05D000078 ORTHO05D000025 2.2e-06 57.4 75 49.3
Lsat_1_v5_gn_3_89921 Lactuca sativa HOM05D000078 ORTHO05D000025 2.2e-06 57.4 84 53.6
MD02G1176200 Malus domestica HOM05D000078 ORTHO05D000025 2.2e-06 57.4 90 46.7
Nitab4.5_0000929g0090 Nicotiana tabacum HOM05D000078 ORTHO05D000025 2.2e-06 57.4 91 47.3
HPP92_010367 Vanilla planifolia HOM05D000078 ORTHO05D000025 2.2e-06 57.4 87 46.0
Migut.C00546 Erythranthe guttata HOM05D000078 ORTHO05D000025 2.8e-06 57.0 86 47.7
Nitab4.5_0001603g0050 Nicotiana tabacum HOM05D000078 ORTHO05D000025 2.8e-06 57.0 91 47.3
Sabra14G0017200 Salix brachista HOM05D000078 ORTHO05D000025 2.8e-06 57.0 93 44.1
PGSC0003DMG400007951 Solanum tuberosum HOM05D000078 ORTHO05D000025 2.8e-06 57.0 89 46.1
Atru.chr13.731 Acer truncatum HOM05D000078 ORTHO05D000025 3.7e-06 56.6 89 44.9
MSTRG.15378 Avicennia marina HOM05D000078 ORTHO05D000025 3.7e-06 56.6 94 44.7
BolC1t00184H Brassica oleracea HOM05D000078 ORTHO05D000025 3.7e-06 56.6 130 40.0
CARHR288460 Cardamine hirsuta HOM05D000078 ORTHO05D000025 3.7e-06 56.6 61 55.7
CiPaw.03G185100 Carya illinoinensis HOM05D000078 ORTHO05D000025 3.7e-06 56.6 93 45.2
Gohir.A05G204500 Gossypium hirsutum HOM05D000078 ORTHO05D000025 3.7e-06 56.6 89 44.9
Gohir.D05G207700 Gossypium hirsutum HOM05D000078 ORTHO05D000025 3.7e-06 56.6 89 44.9
Gorai.009G214300 Gossypium raimondii HOM05D000078 ORTHO05D000025 3.7e-06 56.6 89 44.9
Lsat_1_v5_gn_4_164580 Lactuca sativa HOM05D000078 ORTHO05D000025 3.7e-06 56.6 86 51.2
Potri.002G124000 Populus trichocarpa HOM05D000078 ORTHO05D000025 3.7e-06 56.6 93 43.0
PGSC0003DMG400034101 Solanum tuberosum HOM05D000078 ORTHO05D000025 3.7e-06 56.6 92 44.6
MSTRG.22242 Avicennia marina HOM05D000078 ORTHO05D000025 4.8e-06 56.2 87 47.1
Duzib041G0472 Durio zibethinus HOM05D000078 ORTHO05D000025 4.8e-06 56.2 89 44.9
Glyma.05G092800 Glycine max HOM05D000078 ORTHO05D000025 4.8e-06 56.2 85 50.6
Hma1.2p1_0634F.1_g193110 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 4.8e-06 56.2 87 44.8
Lsat_1_v5_gn_2_85720 Lactuca sativa HOM05D000078 ORTHO05D000025 4.8e-06 56.2 91 48.4
Medtr5g016750 Medicago truncatula HOM05D000078 ORTHO05D000025 4.8e-06 56.2 86 47.7
Nitab4.5_0000287g0030 Nicotiana tabacum HOM05D000078 ORTHO05D000025 4.8e-06 56.2 90 46.7
Nitab4.5_0005129g0040 Nicotiana tabacum HOM05D000078 ORTHO05D000025 4.8e-06 56.2 90 46.7
Potri.005G140900 Populus trichocarpa HOM05D000078 ORTHO05D000025 4.8e-06 56.2 91 45.1
Sed0022243 Sechium edule HOM05D000078 ORTHO05D000025 4.8e-06 56.2 119 41.2
Ca_24750_v3 Cicer arietinum L. HOM05D000078 ORTHO05D000025 6.3e-06 55.8 63 58.7
HanXRQChr04g0103371 Helianthus annuus HOM05D000078 ORTHO05D000025 6.3e-06 55.8 86 46.5
Lj7C74T8 Lonicera japonica HOM05D000078 ORTHO05D000025 6.3e-06 55.8 86 44.2
Peaxi162Scf00549g10014 Petunia axillaris HOM05D000078 ORTHO05D000025 6.3e-06 55.8 91 45.1
Psat0s1717g0320 Pisum sativum HOM05D000078 ORTHO05D000025 6.3e-06 55.8 92 43.5
Rhsim07G0226000 Rhododendron simsii HOM05D000078 ORTHO05D000025 6.3e-06 55.8 89 42.7
TPR.G26859 Trifolium pratense HOM05D000078 ORTHO05D000025 6.3e-06 55.8 86 48.8
Ca_15937_v3 Cicer arietinum L. HOM05D000078 ORTHO05D000025 8.3e-06 55.5 89 46.1
ECA238G2463 Erigeron canadensis HOM05D000078 ORTHO05D000025 8.3e-06 55.5 91 47.3
Oeu033317.1 Olea europaea HOM05D000078 ORTHO05D000025 8.3e-06 55.5 64 51.6


User provided reference genes

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