Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.8e-262 908.7 444 100.0
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 3.2e-227 791.6 443 86.0
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 3.9e-201 704.9 441 75.3
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 7.4e-200 700.7 439 73.8
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.7e-199 698.4 442 74.2
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 1.1e-198 696.8 442 74.4
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.8e-198 696.0 442 74.4
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 6.9e-198 694.1 440 74.5
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 3.4e-197 691.8 442 74.0
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 3.4e-197 691.8 442 74.0
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 1.0e-196 690.3 442 73.8
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.3e-196 689.9 442 73.8
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.7e-196 689.5 440 74.1
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 8.4e-196 687.2 439 73.8
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.4e-195 686.4 440 73.0
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 1.9e-195 686.0 440 73.4
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 2.5e-195 685.6 433 73.7
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 4.2e-195 684.9 441 72.8
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 4.2e-195 684.9 439 73.6
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 4.2e-195 684.9 440 72.3
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 5.5e-195 684.5 455 72.1
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 5.5e-195 684.5 440 73.2
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 7.1e-195 684.1 438 73.1
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 7.1e-195 684.1 442 73.8
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 9.3e-195 683.7 435 73.1
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 2.7e-194 682.2 435 73.8
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 2.7e-194 682.2 435 73.6
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 3.5e-194 681.8 439 73.6
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 7.9e-194 680.6 435 73.3
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 7.9e-194 680.6 441 71.7
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 7.9e-194 680.6 435 73.1
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 7.9e-194 680.6 439 72.9
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 1.3e-193 679.9 439 72.7
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.3e-193 679.9 441 72.6
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 1.8e-193 679.5 441 71.9
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 1.8e-193 679.5 431 73.1
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 2.3e-193 679.1 438 73.3
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 3.0e-193 678.7 436 72.5
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 3.0e-193 678.7 440 73.0
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 3.0e-193 678.7 431 73.1
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 5.1e-193 677.9 439 72.4
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 6.7e-193 677.6 440 73.2
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 8.7e-193 677.2 439 71.8
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 1.1e-192 676.8 440 73.2
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.5e-192 676.4 440 72.0
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.5e-192 676.4 439 72.9
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.9e-192 676.0 435 72.6
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 2.5e-192 675.6 438 72.1
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 2.5e-192 675.6 442 71.0
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 3.3e-192 675.2 441 72.8
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 5.7e-192 674.5 440 71.4
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.7e-192 674.5 435 72.4
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 7.4e-192 674.1 436 72.0
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 9.7e-192 673.7 436 72.2
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.6e-191 672.9 435 73.1
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 2.2e-191 672.5 435 71.7
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 2.8e-191 672.2 450 71.3
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 3.7e-191 671.8 438 71.7
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 6.3e-191 671.0 437 72.1
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 6.3e-191 671.0 437 72.1
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 8.2e-191 670.6 438 72.1
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 8.2e-191 670.6 440 73.0
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 1.1e-190 670.2 438 71.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.1e-190 670.2 435 72.4
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 2.4e-190 669.1 440 72.0
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 3.1e-190 668.7 435 71.3
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 4.1e-190 668.3 440 72.0
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 9.0e-190 667.2 436 70.6
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 3.4e-189 665.2 440 71.8
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 7.7e-189 664.1 430 73.0
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.3e-188 663.3 436 71.6
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 2.9e-188 662.1 439 71.3
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 2.9e-188 662.1 439 70.4
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 8.5e-188 660.6 438 70.5
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 1.4e-187 659.8 440 70.9
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 2.5e-187 659.1 496 64.5
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.2e-187 658.7 436 71.3
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.2e-186 656.8 436 72.7
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 1.6e-186 656.4 441 71.0
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 3.6e-186 655.2 438 71.2
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.5e-184 649.8 428 72.7
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 9.7e-184 647.1 451 68.5
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 1.1e-182 643.7 439 67.9
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.1e-182 643.7 473 65.8
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.2e-181 640.2 511 62.4
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 2.6e-181 639.0 435 67.6
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 4.2e-179 631.7 422 71.8
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 5.5e-179 631.3 425 69.9
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 5.5e-179 631.3 435 68.3
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.7e-178 629.0 435 68.3
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.7e-178 629.0 526 60.5
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 3.0e-177 625.5 417 70.7
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 2.6e-176 622.5 422 70.6
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 4.1e-174 615.1 435 66.7
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 5.9e-173 611.3 409 70.9
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.9e-171 606.3 439 66.3
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 2.5e-171 605.9 404 70.5
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 3.6e-170 602.1 435 66.2
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 3.9e-169 598.6 428 66.1
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.3e-168 595.5 435 65.7
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 9.7e-168 594.0 428 66.4
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 4.8e-167 591.7 442 63.1
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 9.1e-166 587.4 396 71.0
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.5e-165 585.5 440 65.9
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 3.8e-164 582.0 439 61.5
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 6.5e-164 581.3 439 60.8
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.8e-161 573.2 446 60.5
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.8e-159 565.8 437 60.4
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 5.5e-155 551.6 343 75.2
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 2.7e-154 549.3 334 77.5
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.2e-152 543.9 341 75.7
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 2.8e-151 539.3 428 58.4
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 9.1e-150 534.3 361 71.7
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 2.0e-149 533.1 343 72.9
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.0e-148 528.5 444 56.8
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.3e-145 519.6 391 65.7
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.2e-144 517.3 444 55.9
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.4e-144 515.4 444 57.9
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.3e-143 513.8 426 58.5
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 4.1e-142 508.8 429 61.1
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 9.8e-128 461.1 434 53.5
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.4e-126 457.2 340 65.0
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.4e-126 457.2 296 70.9
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 5.4e-126 455.3 353 63.5
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 4.7e-122 442.2 388 58.8
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 1.2e-96 357.8 354 53.4
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.4e-89 334.3 243 66.7
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.0e-88 330.5 228 68.9
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 6.7e-84 315.5 229 66.4
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.7e-66 256.5 158 75.3
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 6.3e-66 255.8 176 68.2
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 1.2e-64 251.5 191 62.8
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 7.2e-62 242.3 144 81.2
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 4.7e-61 239.6 135 80.0
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.2e-56 224.9 133 81.2
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.2e-48 198.4 225 50.2
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.3e-47 194.9 107 80.4
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 6.5e-47 192.6 113 77.0
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 1.8e-36 157.9 140 59.3
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.3e-31 141.7 90 72.2
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.1e-29 134.4 96 66.7
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 3.0e-28 130.6 166 42.8
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 5.2e-28 129.8 85 72.9
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 3.9e-23 113.6 207 33.8
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.5e-22 111.7 244 34.4
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 2.5e-22 110.9 67 68.7
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 1.4e-17 95.1 73 60.3
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 3.2e-17 94.0 57 70.2
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 2.0e-16 91.3 67 67.2
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 7.8e-16 89.4 78 52.6
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 4.0e-12 77.0 118 41.5
COL.COLO4_12209 Corchorus olitorius HOM05D002051 ORTHO05D002041 1.7e-10 71.6 401 22.7
Sc26g0000300 Simmondsia chinensis HOM05D002051 ORTHO05D002041 2.9e-10 70.9 395 23.0
Mapoly0073s0071 Marchantia polymorpha HOM05D002051 ORTHO05D002041 1.1e-09 68.9 318 22.3
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.4e-09 68.6 36 77.8
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 4.1e-09 67.0 38 73.7
Glyma.13G081500 Glycine max HOM05D002051 ORTHO05D002041 7.1e-09 66.2 391 22.5
Zm00001eb035260 Zea mays HOM05D002051 ORTHO05D002041 1.3e-07 62.0 270 23.3
Sed0005930 Sechium edule HOM05D002051 ORTHO05D002041 3.9e-07 60.5 300 22.3
Gohir.D02G193400 Gossypium hirsutum HOM05D002051 ORTHO05D002041 6.6e-07 59.7 265 23.4
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 8.6e-07 59.3 45 57.8
Gorai.005G216200 Gossypium raimondii HOM05D002051 ORTHO05D002041 2.5e-06 57.8 266 23.3


User provided reference genes

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