Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 1.4e-30 135.6 68 100.0
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 5.0e-23 110.5 56 98.2
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 3.7e-18 94.4 56 85.7
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 1.8e-17 92.0 56 82.1
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.1e-17 91.3 56 78.6
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.1e-17 91.3 56 78.6
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.1e-17 91.3 56 78.6
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 3.1e-17 91.3 56 78.6
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 4.1e-17 90.9 56 76.8
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.0e-17 90.1 56 76.8
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 7.0e-17 90.1 56 78.6
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 7.0e-17 90.1 56 78.6
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 7.0e-17 90.1 56 75.0
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 7.0e-17 90.1 56 75.0
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 7.0e-17 90.1 56 75.0
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 7.0e-17 90.1 56 76.8
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 9.1e-17 89.7 56 78.6
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 1.2e-16 89.4 56 76.8
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 1.2e-16 89.4 56 76.8
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.2e-16 89.4 56 76.8
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 1.2e-16 89.4 56 76.8
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 1.2e-16 89.4 56 75.0
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 1.2e-16 89.4 56 76.8
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.2e-16 89.4 56 76.8
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.2e-16 89.4 56 76.8
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 1.2e-16 89.4 56 78.6
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 1.2e-16 89.4 56 76.8
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 1.2e-16 89.4 56 75.0
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.2e-16 89.4 56 78.6
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.6e-16 89.0 56 76.8
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 1.6e-16 89.0 56 76.8
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.6e-16 89.0 56 76.8
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 2.0e-16 88.6 56 76.8
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 2.0e-16 88.6 56 76.8
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 2.0e-16 88.6 56 76.8
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 2.0e-16 88.6 56 75.0
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 2.0e-16 88.6 56 75.0
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.0e-16 88.6 56 75.0
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.0e-16 88.6 56 75.0
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 2.0e-16 88.6 56 75.0
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.0e-16 88.6 56 75.0
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.0e-16 88.6 56 75.0
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 2.0e-16 88.6 56 75.0
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 2.0e-16 88.6 56 78.6
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 2.0e-16 88.6 56 75.0
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 2.0e-16 88.6 56 76.8
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 2.7e-16 88.2 56 75.0
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 2.7e-16 88.2 56 76.8
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 2.7e-16 88.2 56 75.0
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 2.7e-16 88.2 56 76.8
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 2.7e-16 88.2 56 76.8
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 2.7e-16 88.2 56 76.8
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 2.7e-16 88.2 56 75.0
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 2.7e-16 88.2 56 76.8
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 3.5e-16 87.8 56 76.8
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 3.5e-16 87.8 56 73.2
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.5e-16 87.8 58 72.4
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 3.5e-16 87.8 56 73.2
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.5e-16 87.8 56 75.0
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 3.5e-16 87.8 55 76.4
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 3.5e-16 87.8 56 75.0
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 3.5e-16 87.8 55 76.4
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 3.5e-16 87.8 56 76.8
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 4.5e-16 87.4 56 75.0
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 4.5e-16 87.4 53 77.4
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 4.5e-16 87.4 56 78.6
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.5e-16 87.4 56 78.6
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.5e-16 87.4 56 78.6
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 4.5e-16 87.4 56 75.0
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 4.5e-16 87.4 56 75.0
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 4.5e-16 87.4 56 76.8
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 5.9e-16 87.0 53 77.4
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 5.9e-16 87.0 56 78.6
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 5.9e-16 87.0 56 76.8
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 7.7e-16 86.7 58 70.7
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 7.7e-16 86.7 56 75.0
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 7.7e-16 86.7 56 73.2
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 7.7e-16 86.7 56 76.8
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.0e-15 86.3 56 73.2
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.0e-15 86.3 56 73.2
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.0e-15 86.3 56 75.0
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 1.0e-15 86.3 56 75.0
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 1.3e-15 85.9 56 75.0
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 1.3e-15 85.9 56 75.0
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 1.3e-15 85.9 56 75.0
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.3e-15 85.9 50 78.0
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 1.3e-15 85.9 56 69.6
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.7e-15 85.5 56 73.2
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 1.7e-15 85.5 56 75.0
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.7e-15 85.5 56 71.4
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 2.2e-15 85.1 56 75.0
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 2.2e-15 85.1 56 75.0
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 2.2e-15 85.1 56 75.0
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 2.2e-15 85.1 54 77.8
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 2.9e-15 84.7 56 75.0
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 2.9e-15 84.7 56 73.2
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 3.8e-15 84.3 56 75.0
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 3.8e-15 84.3 56 73.2
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 5.0e-15 84.0 56 71.4
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 5.0e-15 84.0 56 73.2
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 5.0e-15 84.0 52 78.8
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 5.0e-15 84.0 56 69.6
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 6.5e-15 83.6 55 74.5
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 6.5e-15 83.6 53 73.6
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 8.5e-15 83.2 56 71.4
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 8.5e-15 83.2 58 74.1
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 8.5e-15 83.2 56 75.0
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 1.9e-14 82.0 57 70.2
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 2.5e-14 81.6 56 69.6
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 2.5e-14 81.6 56 69.6
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 7.2e-14 80.1 56 67.9
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 7.2e-14 80.1 56 67.9
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 7.2e-14 80.1 56 67.9
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 7.2e-14 80.1 56 67.9
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 7.2e-14 80.1 56 67.9
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 9.4e-14 79.7 55 70.9
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.7e-13 77.4 56 69.6
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.7e-13 77.4 56 69.6
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.1e-13 77.0 47 72.3
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 8.0e-13 76.6 57 73.7
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.8e-09 65.5 48 68.8
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 7.0e-09 63.5 46 60.9
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 2.0e-08 62.0 57 57.9
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 8.6e-07 56.6 36 69.4
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 8.6e-07 56.6 36 69.4
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.5e-06 55.1 36 66.7
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.3e-06 54.7 42 61.9


User provided reference genes

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