Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0688500 Oryza sativa ssp. japonica HOM05D005587 ORTHO05D007287 8.9e-298 1026.2 516 100.0
Zm00001eb251030 Zea mays HOM05D005587 ORTHO05D007287 2.6e-249 865.1 500 86.0
CSS0020453 Camellia sinensis var. sinensis HOM05D005587 ORTHO05D007287 1.2e-180 637.1 526 61.8
CSS0020891 Camellia sinensis var. sinensis HOM05D005587 ORTHO05D007287 4.4e-180 635.2 526 61.8
Ciclev10014906m.g Citrus clementina HOM05D005587 ORTHO05D007287 1.3e-179 633.6 514 60.1
HPP92_001519 Vanilla planifolia HOM05D005587 ORTHO05D007287 8.3e-179 630.9 514 61.5
vmacro21076 Vaccinium macrocarpon HOM05D005587 ORTHO05D007287 9.2e-178 627.5 523 61.2
ClCG06G000880 Citrullus lanatus HOM05D005587 ORTHO05D007287 1.7e-176 623.2 519 60.1
TAR375G0462 Trochodendron aralioides HOM05D005587 ORTHO05D007287 1.7e-176 623.2 516 59.7
Prupe.2G118200 Prunus persica HOM05D005587 ORTHO05D007287 3.9e-176 622.1 513 60.6
PGSC0003DMG402001720 Solanum tuberosum HOM05D005587 ORTHO05D007287 5.1e-176 621.7 503 61.0
Rhsim01G0143000 Rhododendron simsii HOM05D005587 ORTHO05D007287 1.5e-175 620.2 529 61.1
Nitab4.5_0005064g0010 Nicotiana tabacum HOM05D005587 ORTHO05D007287 1.9e-175 619.8 498 61.8
MD02G1223000 Malus domestica HOM05D005587 ORTHO05D007287 2.5e-175 619.4 521 58.7
CiPaw.13G083300 Carya illinoinensis HOM05D005587 ORTHO05D007287 4.3e-175 618.6 509 60.1
RcHm_v2.0_Chr1g0344321 Rosa chinensis HOM05D005587 ORTHO05D007287 1.2e-174 617.1 520 59.0
BcaC02g12285 Brassica carinata HOM05D005587 ORTHO05D007287 1.6e-174 616.7 503 61.6
BolC4t22192H Brassica oleracea HOM05D005587 ORTHO05D007287 1.6e-174 616.7 503 61.6
Sed0021182 Sechium edule HOM05D005587 ORTHO05D007287 2.1e-174 616.3 511 59.5
C04p05630 Brassica napus HOM05D005587 ORTHO05D007287 2.8e-174 615.9 502 61.0
Sopen01g035500 Solanum pennellii HOM05D005587 ORTHO05D007287 2.8e-174 615.9 509 60.1
SGA_v2.0_scaffold95G28723 Striga asiatica HOM05D005587 ORTHO05D007287 2.8e-174 615.9 505 61.2
BraA05t19456Z Brassica rapa HOM05D005587 ORTHO05D007287 1.8e-173 613.2 502 60.8
Aqoxy5G01488 Aquilegia oxysepala HOM05D005587 ORTHO05D007287 4.0e-173 612.1 517 58.0
A05p04800 Brassica napus HOM05D005587 ORTHO05D007287 4.0e-173 612.1 506 60.7
Lj5g0020653 Lotus japonicus HOM05D005587 ORTHO05D007287 5.2e-173 611.7 523 60.2
AL4G43710 Arabidopsis lyrata HOM05D005587 ORTHO05D007287 8.9e-173 610.9 506 60.5
QL04p026316 Quercus lobata HOM05D005587 ORTHO05D007287 8.9e-173 610.9 516 59.7
CANSAT25G2964 Cannabis sativa HOM05D005587 ORTHO05D007287 1.2e-172 610.5 518 58.9
Lj4g0023083 Lotus japonicus HOM05D005587 ORTHO05D007287 1.2e-172 610.5 523 60.0
Nn1g00683 Nelumbo nucifera HOM05D005587 ORTHO05D007287 1.2e-172 610.5 510 59.2
Glyma.08G098700 Glycine max HOM05D005587 ORTHO05D007287 1.5e-172 610.1 524 58.6
Gorai.003G062300 Gossypium raimondii HOM05D005587 ORTHO05D007287 2.0e-172 609.8 503 60.0
CARHR139870 Cardamine hirsuta HOM05D005587 ORTHO05D007287 2.6e-172 609.4 503 61.8
TWI59G0612 Tripterygium wilfordii HOM05D005587 ORTHO05D007287 2.6e-172 609.4 516 59.5
FvH4_7g08900 Fragaria vesca HOM05D005587 ORTHO05D007287 4.4e-172 608.6 513 59.8
Migut.N01719 Erythranthe guttata HOM05D005587 ORTHO05D007287 7.6e-172 607.8 507 60.7
Gohir.D03G058500 Gossypium hirsutum HOM05D005587 ORTHO05D007287 9.9e-172 607.4 503 59.8
TPR.G9570 Trifolium pratense HOM05D005587 ORTHO05D007287 9.9e-172 607.4 525 59.2
Aa31LG1G26200 Aethionema arabicum HOM05D005587 ORTHO05D007287 1.3e-171 607.1 507 60.4
CANSAT78G1032 Cannabis sativa HOM05D005587 ORTHO05D007287 1.7e-171 606.7 516 58.1
Carub.0004s2721 Capsella rubella HOM05D005587 ORTHO05D007287 1.7e-171 606.7 506 61.1
FAN06G5081 Fragaria x ananassa HOM05D005587 ORTHO05D007287 1.7e-171 606.7 513 59.8
FAN10G3974 Fragaria x ananassa HOM05D005587 ORTHO05D007287 2.2e-171 606.3 513 59.8
Gohir.A02G117800 Gossypium hirsutum HOM05D005587 ORTHO05D007287 2.2e-171 606.3 503 59.8
PSO063G5522 Papaver somniferum HOM05D005587 ORTHO05D007287 2.9e-171 605.9 520 59.6
PGR004G1682 Punica granatum HOM05D005587 ORTHO05D007287 4.9e-171 605.1 515 59.8
Nitab4.5_0007434g0020 Nicotiana tabacum HOM05D005587 ORTHO05D007287 6.4e-171 604.7 513 59.6
Cc02_g25560 Coffea canephora HOM05D005587 ORTHO05D007287 8.4e-171 604.4 505 59.6
Thhalv10001410m.g Eutrema salsugineum HOM05D005587 ORTHO05D007287 8.4e-171 604.4 502 60.4
Lj9A550G69 Lonicera japonica HOM05D005587 ORTHO05D007287 8.4e-171 604.4 533 57.0
Potri.014G053200 Populus trichocarpa HOM05D005587 ORTHO05D007287 1.1e-170 604.0 522 57.5
BcaB02g08845 Brassica carinata HOM05D005587 ORTHO05D007287 1.4e-170 603.6 502 60.2
THA.LOC104817180 Tarenaya hassleriana HOM05D005587 ORTHO05D007287 2.4e-170 602.8 506 59.7
FAN03G1924 Fragaria x ananassa HOM05D005587 ORTHO05D007287 4.1e-170 602.1 513 59.6
Peaxi162Scf00793g00218 Petunia axillaris HOM05D005587 ORTHO05D007287 4.1e-170 602.1 503 59.6
Sp4g26740 Schrenkiella parvula HOM05D005587 ORTHO05D007287 1.2e-169 600.5 506 59.7
VMungo0720G2234 Vigna mungo HOM05D005587 ORTHO05D007287 1.2e-169 600.5 526 57.8
PSO782G3200 Papaver somniferum HOM05D005587 ORTHO05D007287 2.7e-169 599.4 521 58.7
AT2G44660 Arabidopsis thaliana HOM05D005587 ORTHO05D007287 4.6e-169 598.6 509 60.1
FAN01G1806 Fragaria x ananassa HOM05D005587 ORTHO05D007287 2.3e-168 596.3 513 58.9
COL.COLO4_23407 Corchorus olitorius HOM05D005587 ORTHO05D007287 3.9e-168 595.5 523 56.4
HanXRQChr17g0542121 Helianthus annuus HOM05D005587 ORTHO05D007287 1.5e-167 593.6 504 60.5
CAN.G756.20 Capsicum annuum HOM05D005587 ORTHO05D007287 1.9e-167 593.2 509 58.2
Manes.05G057700 Manihot esculenta HOM05D005587 ORTHO05D007287 5.6e-167 591.7 513 58.1
Eucgr.E01703 Eucalyptus grandis HOM05D005587 ORTHO05D007287 7.3e-167 591.3 507 59.6
Oeu018164.2 Olea europaea HOM05D005587 ORTHO05D007287 9.6e-167 590.9 550 54.9
Hund17123 Selenicereus undatus HOM05D005587 ORTHO05D007287 9.6e-167 590.9 517 58.4
arahy.Tifrunner.gnm1.ann1.5U4ES3 Arachis hypogaea HOM05D005587 ORTHO05D007287 1.2e-166 590.5 511 58.7
Sc02g0003240 Simmondsia chinensis HOM05D005587 ORTHO05D007287 1.2e-166 590.5 521 57.4
GSVIVG01018341001 Vitis vinifera HOM05D005587 ORTHO05D007287 2.8e-166 589.3 508 58.5
AUR62023371 Chenopodium quinoa HOM05D005587 ORTHO05D007287 4.7e-166 588.6 519 56.8
DCAR_025030 Daucus carota HOM05D005587 ORTHO05D007287 1.8e-165 586.6 504 58.9
SGA_v2.0_scaffold77G25257 Striga asiatica HOM05D005587 ORTHO05D007287 1.8e-165 586.6 509 59.9
Thecc.09G197000 Theobroma cacao HOM05D005587 ORTHO05D007287 6.9e-165 584.7 514 56.6
Duzib168G0929 Durio zibethinus HOM05D005587 ORTHO05D007287 2.6e-164 582.8 514 56.0
CsaV3_6G006720 Cucumis sativus L. HOM05D005587 ORTHO05D007287 5.4e-162 575.1 489 59.7
Medtr5g077540 Medicago truncatula HOM05D005587 ORTHO05D007287 9.3e-162 574.3 525 56.6
ATR1098G018 Amborella trichopoda HOM05D005587 ORTHO05D007287 4.6e-161 572.0 507 56.0
EL10Ac1g00718 Beta vulgaris HOM05D005587 ORTHO05D007287 7.8e-161 571.2 521 54.9
ECA236G1181 Erigeron canadensis HOM05D005587 ORTHO05D007287 7.8e-161 571.2 502 57.4
Lsat_1_v5_gn_3_39780 Lactuca sativa HOM05D005587 ORTHO05D007287 7.8e-161 571.2 503 57.5
FAN10G2519 Fragaria x ananassa HOM05D005587 ORTHO05D007287 5.1e-160 568.5 513 57.5
Sabra14G0040000 Salix brachista HOM05D005587 ORTHO05D007287 1.1e-157 560.8 522 54.6
Hma1.2p1_0173F.1_g076470 Hydrangea macrophylla HOM05D005587 ORTHO05D007287 4.9e-155 552.0 422 65.4
Haze_02898 Corylus avellana HOM05D005587 ORTHO05D007287 5.4e-154 548.5 462 60.6
AUR62013785 Chenopodium quinoa HOM05D005587 ORTHO05D007287 1.6e-153 547.0 496 55.6
Dinv44029 Davidia involucrata HOM05D005587 ORTHO05D007287 4.5e-148 528.9 395 65.8
Pp3c14_19880 Physcomitrium patens HOM05D005587 ORTHO05D007287 1.0e-139 501.1 509 51.3
CDE03G0214 Ceratophyllum demersum HOM05D005587 ORTHO05D007287 1.4e-138 497.3 397 61.0
Ca_19146_v3 Cicer arietinum L. HOM05D005587 ORTHO05D007287 1.9e-138 496.9 389 63.2
MELO3C022453.2 Cucumis melo HOM05D005587 ORTHO05D007287 2.5e-138 496.5 524 51.9
Hma1.2p1_0173F.1_g076460 Hydrangea macrophylla HOM05D005587 ORTHO05D007287 1.0e-136 491.1 391 63.2
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 1.5e-135 487.3 414 60.4
Phvul.007G221000 Phaseolus vulgaris HOM05D005587 ORTHO05D007287 1.1e-133 481.1 393 61.1
Mapoly0011s0009 Marchantia polymorpha HOM05D005587 ORTHO05D007287 3.8e-131 472.6 532 47.4
Glyma.05G142800 Glycine max HOM05D005587 ORTHO05D007287 3.1e-117 426.4 319 64.9
Ah.05g177750 Amaranthus hybridus HOM05D005587 ORTHO05D007287 5.7e-111 405.6 520 43.8
Cpa.g.sc50.144 Carica papaya HOM05D005587 ORTHO05D007287 5.5e-106 389.0 300 61.0
Psat7g081520 Pisum sativum HOM05D005587 ORTHO05D007287 1.4e-101 374.4 313 63.3
Solyc01g088650.4 Solanum lycopersicum HOM05D005587 ORTHO05D007287 2.4e-101 373.6 264 67.0
CBR_g3471 Chara braunii HOM05D005587 ORTHO05D000231 3.1e-101 373.2 383 52.0
unitig_748.g7122 Utricularia gibba HOM05D005587 ORTHO05D007287 1.9e-98 364.0 309 60.2
SMO228G0062 Selaginella moellendorffii HOM05D005587 ORTHO05D007287 6.8e-96 355.5 391 48.6
Lalb_Chr07g0187551 Lupinus albus HOM05D005587 ORTHO05D007287 8.8e-96 355.1 320 58.1
Actinidia12629 Actinidia chinensis HOM05D005587 ORTHO05D007287 9.8e-95 351.7 309 58.9
Cre09.g414250 Chlamydomonas reinhardtii HOM05D005587 ORTHO05D007287 1.3e-94 351.3 581 39.9
AagrBONN_evm.TU.Sc2ySwM_362.1445 Anthoceros agrestis HOM05D005587 ORTHO05D007287 1.7e-94 350.9 430 44.7
SHI49641 Sapria himalayana HOM05D005587 ORTHO05D007287 1.2e-87 328.2 304 56.9
Cfa011027 Carpinus fangiana HOM05D005587 ORTHO05D007287 3.5e-84 316.6 462 42.4
MCO07G713 Micromonas commoda HOM05D005587 ORTHO05D007287 1.9e-82 310.8 545 38.2
Actinidia21616 Actinidia chinensis HOM05D005587 ORTHO05D007287 1.9e-77 294.3 499 40.7
Atru.chr4.1484 Acer truncatum HOM05D005587 ORTHO05D007287 9.8e-71 271.9 169 72.8
Haze_06344 Corylus avellana HOM05D005587 ORTHO05D007287 5.1e-67 259.6 304 50.7
Haze_26243 Corylus avellana HOM05D005587 ORTHO05D007287 4.3e-66 256.5 566 33.7
Prupe.2G117600 Prunus persica HOM05D005587 ORTHO05D007287 1.3e-62 245.0 243 54.3
PRCOL_00005170 Prasinoderma coloniale HOM05D005587 ORTHO05D007287 3.7e-62 243.4 534 36.1
AagrBONN_evm.TU.Sc2ySwM_344.1258 Anthoceros agrestis HOM05D005587 ORTHO05D007287 1.0e-59 235.3 252 46.0
Lalb_Chr07g0187561 Lupinus albus HOM05D005587 ORTHO05D007287 1.3e-59 235.0 206 53.9
BcaC02g12284 Brassica carinata HOM05D005587 ORTHO05D007287 1.6e-52 211.5 192 59.9
Cfa024728 Carpinus fangiana HOM05D005587 ORTHO05D007287 1.7e-51 208.0 331 37.2
Haze_27444 Corylus avellana HOM05D005587 ORTHO05D007287 5.1e-51 206.5 235 51.5
unitig_748.g7123 Utricularia gibba HOM05D005587 ORTHO05D007287 1.1e-50 205.3 164 61.0
Atru.chr4.1483 Acer truncatum HOM05D005587 ORTHO05D007287 8.4e-46 189.1 196 52.6
BcaB02g08842 Brassica carinata HOM05D005587 ORTHO05D007287 8.4e-46 189.1 158 57.6
Hma1.2p1_0173F.1_g076450 Hydrangea macrophylla HOM05D005587 ORTHO05D007287 4.2e-45 186.8 196 55.6
PRCOL_00002185 Prasinoderma coloniale HOM05D005340 ORTHO05D006693 4.6e-28 130.2 424 29.5
MD07G1091800 Malus domestica HOM05D005587 ORTHO05D007287 1.0e-27 129.0 128 53.9
CBR_g31513 Chara braunii HOM05D005340 ORTHO05D006693 1.6e-25 121.7 378 29.4
TWI77G0603 Tripterygium wilfordii HOM05D005340 ORTHO05D006693 6.9e-24 116.3 477 27.0
MCO06G120 Micromonas commoda HOM05D005340 ORTHO05D006693 1.1e-21 109.0 388 27.1
Cre16.g690150 Chlamydomonas reinhardtii HOM05D005340 ORTHO05D006693 1.9e-21 108.2 308 29.9
Duzib151G0269 Durio zibethinus HOM05D005340 ORTHO05D006693 2.5e-21 107.8 484 25.4
Eucgr.F02485 Eucalyptus grandis HOM05D005340 ORTHO05D006693 3.2e-21 107.5 476 25.8
Phvul.004G064500 Phaseolus vulgaris HOM05D005340 ORTHO05D006693 4.2e-21 107.1 401 25.9
Phvul.002G243400 Phaseolus vulgaris HOM05D005340 ORTHO05D006693 7.1e-21 106.3 381 27.0
TWI74G0404 Tripterygium wilfordii HOM05D005340 ORTHO05D006693 9.3e-21 105.9 475 25.7
Zm00001eb015730 Zea mays HOM05D005340 ORTHO05D006693 1.2e-20 105.5 430 27.7
CANSAT54G1996 Cannabis sativa HOM05D005340 ORTHO05D006693 1.6e-20 105.1 475 25.3
DCAR_025917 Daucus carota HOM05D005340 ORTHO05D006693 2.1e-20 104.8 476 26.7
Cfa003258 Carpinus fangiana HOM05D001267 ORTHO05D001323 2.7e-20 104.4 127 47.2
Actinidia17633 Actinidia chinensis HOM05D005340 ORTHO05D006693 3.5e-20 104.0 403 27.3
AUR62008983 Chenopodium quinoa HOM05D005340 ORTHO05D006693 7.9e-20 102.8 430 26.0
Atru.chr1.1714 Acer truncatum HOM05D005340 ORTHO05D006693 1.3e-19 102.1 400 26.5
VMungo1127G2281 Vigna mungo HOM05D005340 ORTHO05D006693 2.3e-19 101.3 486 23.7
Mapoly0037s0055 Marchantia polymorpha HOM05D005340 ORTHO05D006693 6.7e-19 99.8 402 25.1
PGR142G3832 Punica granatum HOM05D005340 ORTHO05D006693 6.7e-19 99.8 381 26.5
Glyma.13G046500 Glycine max HOM05D005340 ORTHO05D006693 8.7e-19 99.4 401 25.4
CDE11G0559 Ceratophyllum demersum HOM05D005340 ORTHO05D006693 1.1e-18 99.0 398 26.4
QL02p098613 Quercus lobata HOM05D005340 ORTHO05D006693 1.5e-18 98.6 479 27.3
SMO196G0061 Selaginella moellendorffii HOM05D005340 ORTHO05D006693 3.3e-18 97.4 402 27.1
Haze_26463 Corylus avellana HOM05D005340 ORTHO05D006693 3.7e-17 94.0 242 30.2
AagrBONN_evm.TU.Sc2ySwM_117.1419 Anthoceros agrestis HOM05D005340 ORTHO05D006693 2.4e-16 91.3 538 25.1
CiPaw.05G042900 Carya illinoinensis HOM05D005340 ORTHO05D006693 6.9e-16 89.7 475 25.7
Pp3c19_22340 Physcomitrium patens HOM05D005340 ORTHO05D006693 5.9e-15 86.7 358 25.7
Cfa024122 Carpinus fangiana HOM05D005340 ORTHO05D006693 8.5e-14 82.8 434 23.0
MD07G1092500 Malus domestica HOM05D005587 ORTHO05D007287 4.6e-12 77.0 83 54.2
TAR371G0529 Trochodendron aralioides HOM05D005340 ORTHO05D006693 3.3e-10 70.9 361 24.4
MD00G1174500 Malus domestica HOM05D005587 ORTHO05D007287 1.8e-08 65.1 52 65.4
MD07G1092000 Malus domestica HOM05D005587 ORTHO05D007287 4.1e-08 63.9 106 39.6


User provided reference genes

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