Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0677600 Oryza sativa ssp. japonica HOM05D007174 ORTHO05D009061 1.6e-143 512.7 257 100.0
Zm00001eb187200 Zea mays HOM05D007174 ORTHO05D009061 3.4e-88 328.9 237 74.3
COL.COLO4_14250 Corchorus olitorius HOM05D000059 ORTHO05D005093 1.5e-64 250.4 216 58.8
Eucgr.K00215 Eucalyptus grandis HOM05D007174 ORTHO05D009061 4.4e-64 248.8 206 59.7
Gorai.008G280800 Gossypium raimondii HOM05D007174 ORTHO05D009061 7.6e-64 248.1 221 57.9
Potri.012G134500 Populus trichocarpa HOM05D007174 ORTHO05D009061 7.6e-64 248.1 241 53.9
AUR62016040 Chenopodium quinoa HOM05D007174 ORTHO05D009061 9.9e-64 247.7 242 51.2
Gohir.A12G261100 Gossypium hirsutum HOM05D007174 ORTHO05D009061 9.9e-64 247.7 221 57.9
MSTRG.27141 Avicennia marina HOM05D007174 ORTHO05D009061 2.2e-63 246.5 202 60.4
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 3.8e-63 245.7 182 63.7
Nitab4.5_0008764g0010 Nicotiana tabacum HOM05D007174 ORTHO05D009061 6.4e-63 245.0 203 57.6
TAR374G0585 Trochodendron aralioides HOM05D007174 ORTHO05D009061 6.4e-63 245.0 203 58.6
EL10Ac3g05680 Beta vulgaris HOM05D007174 ORTHO05D009061 8.4e-63 244.6 185 61.6
FvH4_7g28911 Fragaria vesca HOM05D007174 ORTHO05D009061 8.4e-63 244.6 182 63.7
Nitab4.5_0000832g0170 Nicotiana tabacum HOM05D007174 ORTHO05D009061 8.4e-63 244.6 203 57.6
CSS0030546 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 2.4e-62 243.0 191 61.3
MD01G1195800 Malus domestica HOM05D007174 ORTHO05D009061 2.4e-62 243.0 198 58.6
Sopen03g005220 Solanum pennellii HOM05D007174 ORTHO05D009061 2.4e-62 243.0 201 57.7
Ciclev10005753m.g Citrus clementina HOM05D007174 ORTHO05D009061 3.2e-62 242.7 212 56.1
DCAR_018153 Daucus carota HOM05D007174 ORTHO05D009061 4.2e-62 242.3 211 54.0
Glyma.09G147500 Glycine max HOM05D007174 ORTHO05D009061 4.2e-62 242.3 188 60.6
Thecc.03G169500 Theobroma cacao HOM05D007174 ORTHO05D009061 5.4e-62 241.9 213 56.3
Peaxi162Scf00648g00220 Petunia axillaris HOM05D007174 ORTHO05D009061 7.1e-62 241.5 200 57.0
QL09p015458 Quercus lobata HOM05D007174 ORTHO05D009061 7.1e-62 241.5 206 58.3
CAN.G548.22 Capsicum annuum HOM05D007174 ORTHO05D009061 9.3e-62 241.1 203 56.7
Migut.F00385 Erythranthe guttata HOM05D007174 ORTHO05D009061 9.3e-62 241.1 201 59.7
PGSC0003DMG400014262 Solanum tuberosum HOM05D007174 ORTHO05D009061 1.2e-61 240.7 212 55.2
CSS0029278 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 2.1e-61 240.0 191 60.2
CSS0008795 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 2.7e-61 239.6 181 63.0
HanXRQChr15g0473391 Helianthus annuus HOM05D000003 ORTHO05D000004 2.7e-61 239.6 216 56.9
Duzib205G1938 Durio zibethinus HOM05D007174 ORTHO05D009061 3.5e-61 239.2 221 55.2
vmacro09863 Vaccinium macrocarpon HOM05D007174 ORTHO05D009061 4.6e-61 238.8 237 53.2
TPR.G9185 Trifolium pratense HOM05D007174 ORTHO05D009061 6.0e-61 238.4 239 50.2
arahy.Tifrunner.gnm1.ann1.CGP099 Arachis hypogaea HOM05D007174 ORTHO05D009061 1.0e-60 237.7 233 52.4
MBI04_g40843_MAGBIO Magnolia biondii HOM05D007174 ORTHO05D009061 1.3e-60 237.3 200 57.5
Prupe.2G289100 Prunus persica HOM05D007174 ORTHO05D009061 1.7e-60 236.9 220 55.0
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.3e-60 236.5 182 61.5
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.3e-60 236.5 182 61.0
Lalb_Chr19g0131081 Lupinus albus HOM05D007174 ORTHO05D009061 2.3e-60 236.5 188 59.0
Lsat_1_v5_gn_9_53840 Lactuca sativa HOM05D007174 ORTHO05D009061 3.0e-60 236.1 191 60.2
Lj2g0011010 Lotus japonicus HOM05D007174 ORTHO05D009061 3.0e-60 236.1 237 48.9
arahy.Tifrunner.gnm1.ann1.AW02WS Arachis hypogaea HOM05D007174 ORTHO05D009061 3.9e-60 235.7 187 61.0
Psat1g105240 Pisum sativum HOM05D007174 ORTHO05D009061 3.9e-60 235.7 235 50.6
Medtr6g465290 Medicago truncatula HOM05D007174 ORTHO05D009061 5.1e-60 235.3 239 49.8
Sabra12G0101100 Salix brachista HOM05D007174 ORTHO05D009061 5.1e-60 235.3 199 59.3
Nn1g01328 Nelumbo nucifera HOM05D007174 ORTHO05D009061 6.6e-60 235.0 184 62.0
PGR142G4376 Punica granatum HOM05D007174 ORTHO05D009061 6.6e-60 235.0 203 57.6
Cpa.g.sc3.335 Carica papaya HOM05D007174 ORTHO05D009061 8.7e-60 234.6 203 58.1
CiPaw.04G068400 Carya illinoinensis HOM05D007174 ORTHO05D009061 8.7e-60 234.6 208 57.2
SalBow4G1508 Salvia bowleyana HOM05D007174 ORTHO05D009061 8.7e-60 234.6 207 57.5
Lj6g0017578 Lotus japonicus HOM05D007174 ORTHO05D009061 1.1e-59 234.2 237 48.9
Glyma.16G199500 Glycine max HOM05D007174 ORTHO05D009061 1.5e-59 233.8 237 48.9
Dinv35170 Davidia involucrata HOM05D007174 ORTHO05D009061 1.9e-59 233.4 203 56.2
Phvul.004G122400 Phaseolus vulgaris HOM05D007174 ORTHO05D009061 1.9e-59 233.4 235 49.4
GSVIVG01010637001 Vitis vinifera HOM05D007174 ORTHO05D009061 1.9e-59 233.4 190 61.1
Manes.14G029900 Manihot esculenta HOM05D007174 ORTHO05D009061 2.5e-59 233.0 182 61.0
Rhsim09G0195900 Rhododendron simsii HOM05D007174 ORTHO05D009061 2.5e-59 233.0 212 54.2
Sed0014335 Sechium edule HOM05D002642 ORTHO05D002834 3.3e-59 232.6 196 58.7
MELO3C006867.2 Cucumis melo HOM05D007174 ORTHO05D009061 4.3e-59 232.3 182 61.0
ClCG05G007760 Citrullus lanatus HOM05D002642 ORTHO05D002834 5.6e-59 231.9 205 55.6
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 7.3e-59 231.5 182 60.4
VMungo0464G0116 Vigna mungo HOM05D007174 ORTHO05D009061 7.3e-59 231.5 202 55.4
SGA_v2.0_scaffold2G01087 Striga asiatica HOM05D007174 ORTHO05D009061 2.8e-58 229.6 227 53.7
Sc25g0000350 Simmondsia chinensis HOM05D007174 ORTHO05D009061 3.6e-58 229.2 184 61.4
CsaV3_3G016740 Cucumis sativus L. HOM05D007174 ORTHO05D009061 4.8e-58 228.8 238 50.0
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 4.8e-58 228.8 182 60.4
RcHm_v2.0_Chr1g0376581 Rosa chinensis HOM05D007174 ORTHO05D009061 1.8e-57 226.9 182 60.4
CANSAT21G1580 Cannabis sativa HOM05D007174 ORTHO05D009061 4.0e-57 225.7 197 55.3
Lj1A990G55 Lonicera japonica HOM05D007174 ORTHO05D009061 4.0e-57 225.7 192 56.8
Aqoxy7G00468 Aquilegia oxysepala HOM05D007174 ORTHO05D009061 6.9e-57 224.9 249 47.8
TWI23G0481 Tripterygium wilfordii HOM05D007174 ORTHO05D009061 6.9e-57 224.9 220 55.0
ATR0757G135 Amborella trichopoda HOM05D007174 ORTHO05D009061 2.6e-56 223.0 203 55.7
Atru.chr1.537 Acer truncatum HOM05D007174 ORTHO05D009061 5.8e-56 221.9 182 58.8
Sp2g25310 Schrenkiella parvula HOM05D007174 ORTHO05D009061 6.4e-55 218.4 191 58.1
Dinv28496 Davidia involucrata HOM05D000059 ORTHO05D005093 1.1e-54 217.6 222 50.5
BcaB07g29797 Brassica carinata HOM05D007174 ORTHO05D009061 3.2e-54 216.1 189 57.7
Thhalv10004841m.g Eutrema salsugineum HOM05D007174 ORTHO05D009061 3.2e-54 216.1 188 57.4
BcaC03g18123 Brassica carinata HOM05D007174 ORTHO05D009061 5.4e-54 215.3 189 57.1
A02p42000 Brassica napus HOM05D007174 ORTHO05D009061 5.4e-54 215.3 189 57.1
BraA02t09135Z Brassica rapa HOM05D007174 ORTHO05D009061 5.4e-54 215.3 189 57.1
Actinidia03101 Actinidia chinensis HOM05D007174 ORTHO05D009061 7.1e-54 214.9 169 61.5
BolC2t12246H Brassica oleracea HOM05D007174 ORTHO05D009061 9.3e-54 214.5 189 57.1
Haze_13772 Corylus avellana HOM05D007174 ORTHO05D009061 2.1e-53 213.4 215 54.0
Cc02_g03460 Coffea canephora HOM05D007174 ORTHO05D009061 3.5e-53 212.6 257 45.9
CSS0030220 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 4.6e-53 212.2 191 56.5
CARHR275910 Cardamine hirsuta HOM05D007174 ORTHO05D009061 6.7e-52 208.4 187 56.1
THA.LOC104826810 Tarenaya hassleriana HOM05D007174 ORTHO05D009061 6.7e-52 208.4 187 56.7
AagrBONN_evm.TU.Sc2ySwM_228.5753 Anthoceros agrestis HOM05D007174 ORTHO05D009061 1.9e-51 206.8 198 51.5
Carub.0008s2281 Capsella rubella HOM05D007174 ORTHO05D009061 1.9e-51 206.8 188 56.4
arahy.Tifrunner.gnm1.ann1.09T8EW Arachis hypogaea HOM05D007174 ORTHO05D009061 2.5e-51 206.5 182 57.1
AL8G38920 Arabidopsis lyrata HOM05D007174 ORTHO05D009061 3.3e-51 206.1 187 55.1
Mapoly0145s0018 Marchantia polymorpha HOM05D007174 ORTHO05D009061 3.7e-50 202.6 186 53.8
SEGI_06842 Sequoiadendron giganteum HOM05D007174 ORTHO05D009061 3.7e-50 202.6 181 55.8
AT5G62140 Arabidopsis thaliana HOM05D007174 ORTHO05D009061 9.0e-49 198.0 187 54.0
Oeu030133.1 Olea europaea HOM05D007174 ORTHO05D009061 5.8e-48 195.3 138 65.9
ECA232G4749 Erigeron canadensis HOM05D007174 ORTHO05D009061 1.7e-47 193.7 138 67.4
SMO137G0111 Selaginella moellendorffii HOM05D007174 ORTHO05D009061 5.5e-46 188.7 202 52.0
Pp3c13_6960 Physcomitrium patens HOM05D007174 ORTHO05D009061 7.9e-45 184.9 180 49.4
arahy.Tifrunner.gnm1.ann1.JY00AE Arachis hypogaea HOM05D007174 ORTHO05D009061 3.0e-44 183.0 165 57.0
CBR_g53539 Chara braunii HOM05D007174 ORTHO05D009061 3.9e-44 182.6 197 45.2
Pp3c4_22170 Physcomitrium patens HOM05D007174 ORTHO05D009061 8.2e-42 174.9 184 47.3
unitig_747.g21761 Utricularia gibba HOM05D007174 ORTHO05D009061 3.1e-41 172.9 182 52.2
Sc13g0008390 Simmondsia chinensis HOM05D007174 ORTHO05D009061 6.5e-39 165.2 180 46.1
Gohir.D12G262000 Gossypium hirsutum HOM05D007174 ORTHO05D009061 9.3e-38 161.4 221 43.9
EL10Ac3g05682 Beta vulgaris HOM05D007174 ORTHO05D009061 1.6e-34 150.6 200 41.5
AUR62021246 Chenopodium quinoa HOM05D007174 ORTHO05D009061 3.9e-28 129.4 88 65.9
Cre01.g019600 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 5.7e-27 125.6 197 39.6
HanXRQChr15g0482681 Helianthus annuus HOM05D007174 ORTHO05D009061 4.8e-26 122.5 143 48.3
arahy.Tifrunner.gnm1.ann1.U0QS20 Arachis hypogaea HOM05D007174 ORTHO05D009061 2.4e-25 120.2 170 40.6
Sc13g0008380 Simmondsia chinensis HOM05D007174 ORTHO05D009061 5.0e-23 112.5 207 32.9
Solyc03g026330.4 Solanum lycopersicum HOM05D007174 ORTHO05D009061 3.2e-22 109.8 108 48.1
arahy.Tifrunner.gnm1.ann1.BIF85U Arachis hypogaea HOM05D007174 ORTHO05D009061 7.4e-19 98.6 105 48.6
MCO06G097 Micromonas commoda HOM05D007174 ORTHO05D009061 1.7e-18 97.4 210 33.3
CDE01G0613 Ceratophyllum demersum HOM05D007174 ORTHO05D009061 3.7e-18 96.3 99 50.5
Aa31LG11G1430 Aethionema arabicum HOM05D007174 ORTHO05D009061 2.6e-16 90.1 65 67.7
Pp3c26_1960 Physcomitrium patens HOM05D007174 ORTHO05D009061 2.2e-15 87.0 95 44.2
SEGI_30770 Sequoiadendron giganteum HOM05D000501 ORTHO05D009061 1.1e-09 68.2 72 52.8
arahy.Tifrunner.gnm1.ann1.3M52EB Arachis hypogaea HOM05D007174 ORTHO05D010441 7.2e-06 55.5 64 48.4


User provided reference genes

Program Settings