Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0662200 Oryza sativa ssp. japonica HOM05D006632 ORTHO05D008224 3.4e-124 448.4 231 100.0
Zm00001eb249830 Zea mays HOM05D006632 ORTHO05D008224 2.2e-107 392.5 232 87.1
HPP92_014478 Vanilla planifolia HOM05D006632 ORTHO05D008224 1.2e-79 300.4 226 65.5
Nn6g34002 Nelumbo nucifera HOM05D006632 ORTHO05D008224 5.7e-79 298.1 227 63.4
PSO063G6697 Papaver somniferum HOM05D006632 ORTHO05D008224 1.3e-78 297.0 231 62.8
PSO782G3692 Papaver somniferum HOM05D006632 ORTHO05D008224 1.7e-78 296.6 231 63.2
Rhsim07G0107100 Rhododendron simsii HOM05D006632 ORTHO05D008224 8.3e-78 294.3 231 63.6
Carub.0007s2499 Capsella rubella HOM05D006632 ORTHO05D008224 3.5e-76 288.9 232 65.1
PGR042G2887 Punica granatum HOM05D006632 ORTHO05D008224 3.5e-76 288.9 231 64.1
CARHR222910 Cardamine hirsuta HOM05D006632 ORTHO05D008224 4.5e-76 288.5 231 64.1
Gorai.008G238100 Gossypium raimondii HOM05D006632 ORTHO05D008224 4.5e-76 288.5 230 63.0
Gohir.D12G222100 Gossypium hirsutum HOM05D006632 ORTHO05D008224 5.9e-76 288.1 230 63.0
TWI81G0482 Tripterygium wilfordii HOM05D006632 ORTHO05D008224 7.8e-76 287.7 232 62.5
Hma1.2p1_0916F.1_g236520 Hydrangea macrophylla HOM05D006632 ORTHO05D008224 2.3e-75 286.2 231 61.0
GSVIVG01001305001 Vitis vinifera HOM05D006632 ORTHO05D008224 3.8e-75 285.4 227 61.7
AT4G16510 Arabidopsis thaliana HOM05D006632 ORTHO05D008224 6.6e-75 284.6 232 63.4
Oeu062975.1 Olea europaea HOM05D006632 ORTHO05D008224 6.6e-75 284.6 231 62.8
CSS0044555 Camellia sinensis var. sinensis HOM05D006632 ORTHO05D008224 1.1e-74 283.9 230 62.6
Actinidia05199 Actinidia chinensis HOM05D006632 ORTHO05D008224 1.5e-74 283.5 231 61.5
Aa31LG2G12620 Aethionema arabicum HOM05D006632 ORTHO05D008224 1.5e-74 283.5 231 62.8
Prupe.5G072600 Prunus persica HOM05D006632 ORTHO05D008224 1.5e-74 283.5 230 62.2
AL7G38450 Arabidopsis lyrata HOM05D006632 ORTHO05D008224 5.6e-74 281.6 231 62.8
A08p12540 Brassica napus HOM05D006632 ORTHO05D008224 5.6e-74 281.6 229 64.2
BraA08t33245Z Brassica rapa HOM05D006632 ORTHO05D008224 5.6e-74 281.6 229 64.2
BolC8t48376H Brassica oleracea HOM05D006632 ORTHO05D008224 9.5e-74 280.8 229 64.6
CANSAT21G1011 Cannabis sativa HOM05D006632 ORTHO05D008224 1.2e-73 280.4 230 61.7
Cfa012746 Carpinus fangiana HOM05D006632 ORTHO05D008224 1.2e-73 280.4 230 62.2
Aqoxy5G03914 Aquilegia oxysepala HOM05D006632 ORTHO05D008224 1.6e-73 280.0 226 62.4
Gohir.A12G219900 Gossypium hirsutum HOM05D006632 ORTHO05D008224 2.8e-73 279.3 230 61.7
CiPaw.11G152400 Carya illinoinensis HOM05D006632 ORTHO05D008224 3.6e-73 278.9 230 60.9
Sp7g15070 Schrenkiella parvula HOM05D006632 ORTHO05D008224 3.6e-73 278.9 230 63.0
Sed0019633 Sechium edule HOM05D006632 ORTHO05D008224 6.1e-73 278.1 228 61.4
Atru.chr9.1340 Acer truncatum HOM05D006632 ORTHO05D008224 1.0e-72 277.3 232 60.8
Eucgr.E00435 Eucalyptus grandis HOM05D006632 ORTHO05D008224 1.4e-72 276.9 237 59.5
Nitab4.5_0000312g0210 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.4e-72 276.9 228 60.1
Nitab4.5_0004059g0060 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.8e-72 276.6 232 59.5
Sopen08g003360 Solanum pennellii HOM05D006632 ORTHO05D008224 1.8e-72 276.6 225 63.1
PGSC0003DMG400012506 Solanum tuberosum HOM05D006632 ORTHO05D008224 1.8e-72 276.6 224 62.5
Duzib205G0315 Durio zibethinus HOM05D006632 ORTHO05D008224 2.3e-72 276.2 230 60.0
FAN18G2132 Fragaria x ananassa HOM05D006632 ORTHO05D008224 2.3e-72 276.2 230 60.9
Glyma.05G058200 Glycine max HOM05D006632 ORTHO05D008224 2.3e-72 276.2 230 62.6
Potri.003G111100 Populus trichocarpa HOM05D006632 ORTHO05D008224 2.3e-72 276.2 230 58.7
Potri.008G135980 Populus trichocarpa HOM05D006632 ORTHO05D008224 2.3e-72 276.2 230 58.7
VMungo0251G2371 Vigna mungo HOM05D006632 ORTHO05D008224 3.0e-72 275.8 230 62.2
Ciclev10022042m.g Citrus clementina HOM05D006632 ORTHO05D008224 4.0e-72 275.4 233 60.9
Solyc08g007410.4 Solanum lycopersicum HOM05D006632 ORTHO05D008224 5.2e-72 275.0 225 63.1
ClCG10G002780 Citrullus lanatus HOM05D006632 ORTHO05D008224 6.8e-72 274.6 230 60.9
Phvul.003G219500 Phaseolus vulgaris HOM05D006632 ORTHO05D008224 1.5e-71 273.5 230 62.2
THA.LOC104814709 Tarenaya hassleriana HOM05D006632 ORTHO05D008224 1.5e-71 273.5 231 61.9
Thecc.03G254100 Theobroma cacao HOM05D006632 ORTHO05D008224 1.5e-71 273.5 228 61.0
Migut.A00961 Erythranthe guttata HOM05D006632 ORTHO05D008224 2.0e-71 273.1 239 60.7
Thhalv10026162m.g Eutrema salsugineum HOM05D006632 ORTHO05D008224 2.0e-71 273.1 230 62.6
HanXRQChr03g0088651 Helianthus annuus HOM05D006632 ORTHO05D008224 2.0e-71 273.1 221 61.5
Cc08_g12700 Coffea canephora HOM05D006632 ORTHO05D008224 2.6e-71 272.7 229 62.0
Haze_07882 Corylus avellana HOM05D006632 ORTHO05D008224 2.6e-71 272.7 226 61.9
Lj2A215T22 Lonicera japonica HOM05D006632 ORTHO05D008224 4.4e-71 271.9 228 60.1
Manes.01G079200 Manihot esculenta HOM05D006632 ORTHO05D008224 5.8e-71 271.6 234 58.5
Ah.12g056690 Amaranthus hybridus HOM05D006632 ORTHO05D008224 7.5e-71 271.2 225 60.4
EL10Ac5g13049 Beta vulgaris HOM05D006632 ORTHO05D008224 7.5e-71 271.2 224 61.2
Lsat_1_v5_gn_6_91561 Lactuca sativa HOM05D006632 ORTHO05D008224 7.5e-71 271.2 225 60.9
MSTRG.25531 Avicennia marina HOM05D006632 ORTHO05D008224 1.3e-70 270.4 229 60.3
MD06G1061300 Malus domestica HOM05D006632 ORTHO05D008224 1.3e-70 270.4 183 69.9
arahy.Tifrunner.gnm1.ann1.E5X9TE Arachis hypogaea HOM05D006632 ORTHO05D008224 1.7e-70 270.0 227 61.7
MELO3C013948.2 Cucumis melo HOM05D006632 ORTHO05D008224 1.7e-70 270.0 228 60.5
arahy.Tifrunner.gnm1.ann1.UQJ0AM Arachis hypogaea HOM05D006632 ORTHO05D008224 2.2e-70 269.6 227 61.7
CDE02G1947 Ceratophyllum demersum HOM05D006632 ORTHO05D008224 2.9e-70 269.2 198 65.7
AUR62039953 Chenopodium quinoa HOM05D006632 ORTHO05D008224 2.9e-70 269.2 223 60.5
DCAR_027784 Daucus carota HOM05D006632 ORTHO05D008224 3.7e-70 268.9 231 59.7
vmacro14091 Vaccinium macrocarpon HOM05D006632 ORTHO05D008224 6.4e-70 268.1 276 52.5
Lj4g0001078 Lotus japonicus HOM05D006632 ORTHO05D008224 8.3e-70 267.7 229 59.4
CsaV3_3G002820 Cucumis sativus L. HOM05D006632 ORTHO05D008224 1.1e-69 267.3 195 65.6
RcHm_v2.0_Chr7g0202881 Rosa chinensis HOM05D006632 ORTHO05D008224 1.4e-69 266.9 225 59.1
AUR62007500 Chenopodium quinoa HOM05D006632 ORTHO05D008224 5.4e-69 265.0 224 59.8
FAN04G0341 Fragaria x ananassa HOM05D006632 ORTHO05D008224 5.4e-69 265.0 237 57.8
Nitab4.5_0001707g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 7.0e-69 264.6 238 56.3
Rhsim07G0106500 Rhododendron simsii HOM05D006632 ORTHO05D008224 9.2e-69 264.2 298 49.0
TPR.G37669 Trifolium pratense HOM05D006632 ORTHO05D008224 9.2e-69 264.2 231 59.3
ECA240G2825 Erigeron canadensis HOM05D006632 ORTHO05D008224 1.2e-68 263.8 226 58.4
FAN08G0873 Fragaria x ananassa HOM05D006632 ORTHO05D008224 1.2e-68 263.8 237 57.4
unitig_27.g25096 Utricularia gibba HOM05D006632 ORTHO05D008224 1.6e-68 263.5 185 68.1
Psat4g070160 Pisum sativum HOM05D006632 ORTHO05D008224 6.0e-68 261.5 230 59.1
SEGI_31519 Sequoiadendron giganteum HOM05D006632 ORTHO05D008224 1.3e-67 260.4 223 58.3
Lalb_Chr05g0225741 Lupinus albus HOM05D006632 ORTHO05D008224 2.3e-67 259.6 230 59.1
FAN13G0450 Fragaria x ananassa HOM05D006632 ORTHO05D008224 3.9e-67 258.8 255 53.7
CAN.G1227.10 Capsicum annuum HOM05D006632 ORTHO05D008224 6.6e-67 258.1 175 68.0
Sabra03G0077000 Salix brachista HOM05D006632 ORTHO05D008224 5.6e-66 255.0 272 50.7
Medtr4g101100 Medicago truncatula HOM05D006632 ORTHO05D008224 2.1e-65 253.1 232 57.3
Pp3c24_4050 Physcomitrium patens HOM05D006632 ORTHO05D008224 1.8e-64 250.0 250 54.8
SMO143G0241 Selaginella moellendorffii HOM05D006632 ORTHO05D008224 7.5e-63 244.6 180 63.3
BcaC07g37993 Brassica carinata HOM05D006632 ORTHO05D008224 3.7e-62 242.3 202 63.4
Dinv21617 Davidia involucrata HOM05D006632 ORTHO05D008224 1.1e-61 240.7 228 54.8
Mapoly0121s0036 Marchantia polymorpha HOM05D006632 ORTHO05D008224 1.4e-61 240.4 200 58.5
SGA_v2.0_scaffold120G32870 Striga asiatica HOM05D006632 ORTHO05D008224 2.4e-61 239.6 289 48.8
Sc01g0008570 Simmondsia chinensis HOM05D006632 ORTHO05D008224 2.3e-59 233.0 160 67.5
Peaxi162Scf00102g01151 Petunia axillaris HOM05D006632 ORTHO05D008224 3.6e-57 225.7 230 51.3
CBR_g26463 Chara braunii HOM05D006632 ORTHO05D008224 2.0e-55 219.9 195 56.9
MD00G1115100 Malus domestica HOM05D006632 ORTHO05D008224 2.4e-53 213.0 243 47.7
Hund14588 Selenicereus undatus HOM05D006632 ORTHO05D008224 3.5e-52 209.1 383 36.8
Nitab4.5_0017825g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.1e-50 204.1 191 56.0
QL12p012693 Quercus lobata HOM05D006632 ORTHO05D008224 1.5e-50 203.8 189 58.7
DCAR_004945 Daucus carota HOM05D006632 ORTHO05D008224 2.5e-50 203.0 229 48.9
Cre07.g338250 Chlamydomonas reinhardtii HOM05D006632 ORTHO05D008224 2.6e-47 193.0 242 44.6
PRCOL_00001140 Prasinoderma coloniale HOM05D006632 ORTHO05D008224 6.4e-38 161.8 213 44.6
SalBow6G7145 Salvia bowleyana HOM05D006632 ORTHO05D008224 2.7e-36 156.4 157 56.1
C01p26240 Brassica napus HOM05D006632 ORTHO05D008224 1.3e-33 147.5 135 57.0
BolC1t02568H Brassica oleracea HOM05D006632 ORTHO05D008224 1.3e-33 147.5 135 57.0
ATR0564G418 Amborella trichopoda HOM05D006632 ORTHO05D008224 1.8e-32 143.7 161 49.7
Ca_21955_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 5.3e-32 142.1 155 52.9
MCO15G182 Micromonas commoda HOM05D006632 ORTHO05D008224 9.0e-32 141.4 239 38.5
Ca_22220_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 1.2e-31 141.0 173 48.6
Dinv39125 Davidia involucrata HOM05D006632 ORTHO05D008224 2.3e-27 126.7 130 55.4
AagrBONN_evm.TU.Sc2ySwM_117.1014 Anthoceros agrestis HOM05D006632 ORTHO05D008224 2.0e-23 113.6 168 43.5
BraA01t02010Z Brassica rapa HOM05D006632 ORTHO05D008224 5.8e-23 112.1 149 47.7
A01p20910 Brassica napus HOM05D006632 ORTHO05D008224 4.9e-22 109.0 149 47.0
Peaxi162Scf00002g00156 Petunia axillaris HOM05D006632 ORTHO05D008224 5.6e-18 95.5 78 60.3
Duzib068G0053 Durio zibethinus HOM05D006632 ORTHO05D008224 1.3e-17 94.4 54 75.9
Cpa.g.sc276.6 Carica papaya HOM05D006632 ORTHO05D008224 4.5e-15 85.9 108 50.9
TAR636G0287 Trochodendron aralioides HOM05D006632 ORTHO05D008224 5.5e-13 79.0 100 48.0
FvH4_5g00080 Fragaria vesca HOM05D011292 ORTHO05D013599 4.6e-12 75.9 101 46.5
DCAR_004944 Daucus carota HOM05D006632 ORTHO05D008224 5.7e-10 68.9 101 46.5
Potri.001G122501 Populus trichocarpa HOM05D006632 ORTHO05D008224 1.4e-08 64.3 53 52.8
Sabra01G0094400 Salix brachista HOM05D006632 ORTHO05D008224 5.9e-07 58.9 45 55.6


User provided reference genes

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